Wall clock time and date at job start Tue Mar 31 2020 20:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47399 * 2 1 4 4 C 1.50705 * 109.47003 * 239.99534 * 2 1 3 5 5 O 1.21278 * 120.00075 * 245.46655 * 4 2 1 6 6 N 1.34776 * 119.99663 * 65.47355 * 4 2 1 7 7 C 1.46495 * 120.00123 * 185.30881 * 6 4 2 8 8 H 1.09005 * 109.47211 * 355.56918 * 7 6 4 9 9 C 1.53002 * 109.47266 * 115.56390 * 7 6 4 10 10 N 1.46495 * 109.47509 * 305.00614 * 9 7 6 11 11 C 1.36935 * 120.00412 * 179.97438 * 10 9 7 12 12 H 1.07996 * 119.99820 * 359.97438 * 11 10 9 13 13 C 1.38813 * 120.00213 * 179.97438 * 11 10 9 14 14 N 1.31621 * 119.99769 * 359.97438 * 13 11 10 15 15 Si 1.86794 * 120.00101 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47320 * 59.99880 * 15 13 11 17 17 H 1.48499 * 109.47277 * 179.97438 * 15 13 11 18 18 H 1.48507 * 109.47062 * 299.99677 * 15 13 11 19 19 C 1.52998 * 109.47502 * 235.56814 * 7 6 4 20 20 C 1.54266 * 110.03330 * 177.42534 * 19 7 6 21 21 C 1.54891 * 104.19820 * 217.10475 * 20 19 7 22 22 C 1.54887 * 102.74482 * 37.94086 * 21 20 19 23 23 C 1.53876 * 110.03294 * 60.26114 * 19 7 6 24 24 C 1.50705 * 109.47218 * 119.99856 * 2 1 3 25 25 C 1.34670 * 126.58554 * 357.12989 * 24 2 1 26 26 N 1.34134 * 108.01419 * 180.02562 * 25 24 2 27 27 C 1.30490 * 109.25793 * 359.97438 * 26 25 24 28 28 N 1.35039 * 108.70347 * 0.26404 * 27 26 25 29 29 H 0.96998 * 126.40224 * 179.74292 * 28 27 26 30 30 H 1.09006 * 109.46742 * 300.00620 * 1 2 3 31 31 H 1.09003 * 109.46735 * 59.99926 * 1 2 3 32 32 H 1.08997 * 109.47483 * 180.02562 * 1 2 3 33 33 H 1.09006 * 109.47225 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.47238 * 299.99766 * 3 2 1 35 35 H 1.08993 * 109.47635 * 60.00119 * 3 2 1 36 36 H 0.97000 * 120.00133 * 5.30896 * 6 4 2 37 37 H 1.09005 * 109.46875 * 65.00316 * 9 7 6 38 38 H 1.09002 * 109.47437 * 185.00139 * 9 7 6 39 39 H 0.97008 * 119.99517 * 359.97438 * 10 9 7 40 40 H 0.96998 * 119.99609 * 179.97438 * 14 13 11 41 41 H 1.08994 * 110.01443 * 298.86898 * 19 7 6 42 42 H 1.09001 * 110.48845 * 335.78501 * 20 19 7 43 43 H 1.09005 * 110.48708 * 98.42903 * 20 19 7 44 44 H 1.09003 * 110.75597 * 279.63418 * 21 20 19 45 45 H 1.08995 * 110.91772 * 156.33070 * 21 20 19 46 46 H 1.09002 * 110.49184 * 203.37644 * 22 21 20 47 47 H 1.09007 * 110.59646 * 80.79692 * 22 21 20 48 48 H 1.08998 * 110.02875 * 238.57556 * 23 19 7 49 49 H 1.09003 * 110.03162 * 359.97438 * 23 19 7 50 50 H 1.07998 * 125.99453 * 0.03613 * 25 24 2 51 51 H 1.08004 * 125.64911 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2305 5 8 2.6456 -1.7512 -1.1219 6 7 1.8001 -0.1894 -2.4515 7 6 2.1850 -0.9358 -3.6518 8 1 2.7111 -1.8451 -3.3611 9 6 0.9310 -1.3045 -4.4472 10 7 -0.0006 -2.0311 -3.5811 11 6 -1.2005 -2.4654 -4.0779 12 1 -1.4602 -2.2718 -5.1081 13 6 -2.0830 -3.1544 -3.2573 14 7 -1.7662 -3.3908 -2.0019 15 14 -3.7195 -3.7474 -3.9352 16 1 -3.4784 -4.6797 -5.0657 17 1 -4.4725 -4.4509 -2.8660 18 1 -4.5083 -2.5835 -4.4131 19 6 3.1024 -0.0706 -4.5182 20 6 3.5677 -0.8674 -5.7544 21 6 5.0339 -0.4159 -5.9677 22 6 5.5640 -0.2807 -4.5186 23 6 4.3718 0.3024 -3.7324 24 6 2.0323 -0.7104 1.2305 25 6 1.2817 -1.2219 2.2247 26 7 2.1078 -1.7681 3.1293 27 6 3.3417 -1.6151 2.7331 28 7 3.3394 -0.9549 1.5551 29 1 4.1184 -0.7030 1.0350 30 1 -0.3633 0.5140 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 3.1301 1.4424 -0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6768 1.9563 0.8899 36 1 1.3780 0.6799 -2.5355 37 1 0.4530 -0.3959 -4.8135 38 1 1.2087 -1.9349 -5.2919 39 1 0.2325 -2.2047 -2.6556 40 1 -2.3831 -3.8719 -1.4284 41 1 2.5779 0.8323 -4.8307 42 1 3.5233 -1.9385 -5.5569 43 1 2.9602 -0.6132 -6.6230 44 1 5.0716 0.5435 -6.4837 45 1 5.5976 -1.1704 -6.5163 46 1 6.4134 0.4016 -4.4851 47 1 5.8435 -1.2560 -4.1200 48 1 4.4636 1.3864 -3.6643 49 1 4.3339 -0.1326 -2.7337 50 1 0.2036 -1.1968 2.2834 51 1 4.2195 -1.9555 3.2622 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569612377.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:33 Heat of formation + Delta-G solvation = 11.316859 kcal Electronic energy + Delta-G solvation = -30873.152709 eV Core-core repulsion = 27000.741467 eV Total energy + Delta-G solvation = -3872.411242 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.96663 -39.94859 -38.22236 -35.39396 -35.10917 -33.48264 -32.18831 -31.11457 -29.68337 -28.67104 -28.39776 -27.13675 -26.22996 -24.03099 -23.10885 -21.80986 -21.18296 -20.58819 -20.47078 -19.88524 -19.38175 -17.80042 -17.12694 -16.41901 -16.14537 -15.45842 -15.20707 -14.64059 -14.59995 -14.35961 -14.15283 -13.90239 -13.73361 -13.38027 -13.33221 -13.22105 -13.16078 -12.59667 -12.48995 -12.30355 -12.09433 -11.87099 -11.50157 -11.39709 -11.23797 -11.12726 -11.05285 -11.01002 -10.91610 -10.77895 -10.67504 -10.54867 -10.31783 -10.06847 -9.81651 -9.72981 -9.67922 -9.34645 -8.84456 -8.59161 -8.14053 -6.87874 -5.70647 -3.00309 2.24289 2.97567 3.31828 3.35605 3.45425 3.50238 3.51780 3.58175 4.54293 4.57466 4.62988 4.65944 4.74978 4.84190 4.92549 4.97454 5.15822 5.24177 5.44681 5.47776 5.50093 5.56257 5.58944 5.60994 5.64917 5.65812 5.68928 5.83616 5.84659 5.86548 5.87116 5.96322 5.99604 6.05202 6.08451 6.14466 6.26285 6.28591 6.34209 6.40520 6.47414 6.49361 6.65822 6.69980 6.96673 6.97752 7.56854 7.71834 7.84087 8.28614 8.46606 8.57689 9.58171 10.16130 10.51600 11.50852 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.006810 B = 0.005756 C = 0.003427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4110.562119 B = 4863.111969 C = 8169.100452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.003 4.003 3 C -0.140 4.140 4 C 0.528 3.472 5 O -0.534 6.534 6 N -0.708 5.708 7 C 0.138 3.862 8 H 0.099 0.901 9 C 0.143 3.857 10 N -0.727 5.727 11 C -0.243 4.243 12 H 0.067 0.933 13 C -0.010 4.010 14 N -0.926 5.926 15 Si 0.904 3.096 16 H -0.287 1.287 17 H -0.291 1.291 18 H -0.287 1.287 19 C -0.096 4.096 20 C -0.116 4.116 21 C -0.124 4.124 22 C -0.125 4.125 23 C -0.116 4.116 24 C 0.014 3.986 25 C -0.016 4.016 26 N -0.495 5.495 27 C 0.176 3.824 28 N -0.553 5.553 29 H 0.415 0.585 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.053 0.947 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.396 0.604 37 H 0.018 0.982 38 H 0.028 0.972 39 H 0.386 0.614 40 H 0.255 0.745 41 H 0.073 0.927 42 H 0.071 0.929 43 H 0.068 0.932 44 H 0.063 0.937 45 H 0.063 0.937 46 H 0.059 0.941 47 H 0.064 0.936 48 H 0.057 0.943 49 H 0.064 0.936 50 H 0.169 0.831 51 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.522 13.363 0.715 19.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.008 4.008 3 C -0.197 4.197 4 C 0.314 3.686 5 O -0.410 6.410 6 N -0.358 5.358 7 C 0.033 3.967 8 H 0.117 0.883 9 C 0.014 3.986 10 N -0.372 5.372 11 C -0.375 4.375 12 H 0.085 0.915 13 C -0.206 4.206 14 N -0.573 5.573 15 Si 0.735 3.265 16 H -0.214 1.214 17 H -0.217 1.217 18 H -0.214 1.214 19 C -0.116 4.116 20 C -0.154 4.154 21 C -0.161 4.161 22 C -0.162 4.162 23 C -0.153 4.153 24 C -0.103 4.103 25 C -0.164 4.164 26 N -0.214 5.214 27 C -0.108 4.108 28 N -0.154 5.154 29 H 0.252 0.748 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.103 0.897 33 H 0.072 0.928 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.230 0.770 37 H 0.036 0.964 38 H 0.046 0.954 39 H 0.221 0.779 40 H 0.065 0.935 41 H 0.091 0.909 42 H 0.090 0.910 43 H 0.086 0.914 44 H 0.082 0.918 45 H 0.082 0.918 46 H 0.077 0.923 47 H 0.082 0.918 48 H 0.076 0.924 49 H 0.083 0.917 50 H 0.186 0.814 51 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 14.523 12.138 1.467 18.984 hybrid contribution -0.518 0.364 -1.167 1.328 sum 14.005 12.502 0.300 18.776 Atomic orbital electron populations 1.21827 0.89663 1.05290 1.02660 1.19239 0.98539 0.94363 0.88676 1.21914 1.00768 0.93778 1.03269 1.20252 0.78924 0.85084 0.84383 1.90705 1.40733 1.23157 1.86433 1.45738 1.62347 1.22401 1.05268 1.21453 0.95799 0.95216 0.84219 0.88319 1.21028 0.89142 0.95103 0.93341 1.42277 1.17155 1.66454 1.11301 1.19126 0.93562 1.29324 0.95452 0.91484 1.24721 0.98671 1.01315 0.95920 1.69662 1.36670 1.45859 1.05151 0.86328 0.84077 0.78462 0.77617 1.21414 1.21703 1.21397 1.22060 0.95622 0.98688 0.95235 1.22386 0.95460 1.00466 0.97094 1.22487 0.96240 1.00880 0.96536 1.22352 0.97460 1.00836 0.95576 1.22138 0.93900 0.99938 0.99347 1.20495 0.83913 1.07267 0.98592 1.22068 0.99620 1.02406 0.92278 1.70249 1.00013 1.21431 1.29730 1.24802 0.97985 1.00651 0.87327 1.43038 1.08014 1.44679 1.19714 0.74820 0.91478 0.91093 0.89658 0.92820 0.91355 0.91042 0.77037 0.96430 0.95414 0.77924 0.93478 0.90864 0.90983 0.91359 0.91805 0.91814 0.92256 0.91756 0.92383 0.91678 0.81375 0.78067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 7.36 37.16 0.27 -1.73 16 2 C 0.00 -0.05 0.87 -156.81 -0.14 -0.18 16 3 C -0.14 -1.37 8.30 37.16 0.31 -1.06 16 4 C 0.53 8.61 5.59 -10.98 -0.06 8.54 16 5 O -0.53 -10.81 15.12 5.56 0.08 -10.73 16 6 N -0.71 -10.29 3.74 -53.81 -0.20 -10.49 16 7 C 0.14 2.17 1.73 -67.93 -0.12 2.05 16 8 H 0.10 1.86 6.89 -51.93 -0.36 1.51 16 9 C 0.14 2.76 5.66 -4.04 -0.02 2.73 16 10 N -0.73 -18.20 5.43 -59.91 -0.33 -18.53 16 11 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16 12 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 13 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 14 N -0.93 -28.00 13.06 55.49 0.72 -27.27 16 15 Si 0.90 22.50 29.55 -169.99 -5.02 17.47 16 16 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 17 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 18 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 19 C -0.10 -1.15 2.69 -89.50 -0.24 -1.39 16 20 C -0.12 -1.34 5.40 -25.07 -0.14 -1.47 16 21 C -0.12 -1.20 6.91 -24.74 -0.17 -1.38 16 22 C -0.12 -1.25 6.83 -25.08 -0.17 -1.43 16 23 C -0.12 -1.26 6.20 -25.62 -0.16 -1.41 16 24 C 0.01 0.21 5.04 -81.60 -0.41 -0.20 16 25 C -0.02 -0.26 10.85 -17.81 -0.19 -0.46 16 26 N -0.50 -8.29 11.25 -14.67 -0.17 -8.46 16 27 C 0.18 2.35 13.04 -90.39 -1.18 1.17 16 28 N -0.55 -7.20 5.81 -10.30 -0.06 -7.26 16 29 H 0.41 4.44 8.96 -40.82 -0.37 4.07 16 30 H 0.07 0.82 7.86 -51.93 -0.41 0.41 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.08 1.61 8.06 -51.93 -0.42 1.20 16 33 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.57 7.18 -51.93 -0.37 0.19 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.40 4.90 7.80 -40.82 -0.32 4.58 16 37 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 38 H 0.03 0.55 7.42 -51.93 -0.39 0.17 16 39 H 0.39 10.46 6.83 -40.82 -0.28 10.18 16 40 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 41 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.07 0.94 7.74 -51.93 -0.40 0.53 16 43 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 49 H 0.06 0.82 7.11 -51.93 -0.37 0.45 16 50 H 0.17 2.67 7.33 -52.49 -0.38 2.28 16 51 H 0.20 1.80 8.06 -52.48 -0.42 1.37 16 LS Contribution 404.18 15.07 6.09 6.09 Total: -1.00 -34.78 404.18 -10.22 -45.00 By element: Atomic # 1 Polarization: 26.35 SS G_CDS: -8.68 Total: 17.67 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: -2.66 Total: -3.50 kcal Atomic # 7 Polarization: -71.98 SS G_CDS: -0.03 Total: -72.01 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: 0.08 Total: -10.73 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -34.78 -10.22 -45.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569612377.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.319 kcal (2) G-P(sol) polarization free energy of solvation -34.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds