Wall clock time and date at job start Tue Mar 31 2020 20:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47399 * 2 1 4 4 C 1.50705 * 109.47003 * 239.99534 * 2 1 3 5 5 O 1.21278 * 120.00075 * 245.46655 * 4 2 1 6 6 N 1.34776 * 119.99663 * 65.47355 * 4 2 1 7 7 C 1.46495 * 120.00123 * 185.30881 * 6 4 2 8 8 H 1.09005 * 109.47211 * 355.56918 * 7 6 4 9 9 C 1.53002 * 109.47266 * 115.56390 * 7 6 4 10 10 N 1.46495 * 109.47509 * 305.00614 * 9 7 6 11 11 C 1.36935 * 120.00412 * 179.97438 * 10 9 7 12 12 H 1.07996 * 119.99820 * 359.97438 * 11 10 9 13 13 C 1.38813 * 120.00213 * 179.97438 * 11 10 9 14 14 N 1.31621 * 119.99769 * 359.97438 * 13 11 10 15 15 Si 1.86794 * 120.00101 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47320 * 59.99880 * 15 13 11 17 17 H 1.48499 * 109.47277 * 179.97438 * 15 13 11 18 18 H 1.48507 * 109.47062 * 299.99677 * 15 13 11 19 19 C 1.52998 * 109.47502 * 235.56814 * 7 6 4 20 20 C 1.54266 * 110.03330 * 177.42534 * 19 7 6 21 21 C 1.54891 * 104.19820 * 217.10475 * 20 19 7 22 22 C 1.54887 * 102.74482 * 37.94086 * 21 20 19 23 23 C 1.53876 * 110.03294 * 60.26114 * 19 7 6 24 24 C 1.50705 * 109.47218 * 119.99856 * 2 1 3 25 25 C 1.34670 * 126.58554 * 357.12989 * 24 2 1 26 26 N 1.34134 * 108.01419 * 180.02562 * 25 24 2 27 27 C 1.30490 * 109.25793 * 359.97438 * 26 25 24 28 28 N 1.35039 * 108.70347 * 0.26404 * 27 26 25 29 29 H 0.96998 * 126.40224 * 179.74292 * 28 27 26 30 30 H 1.09006 * 109.46742 * 300.00620 * 1 2 3 31 31 H 1.09003 * 109.46735 * 59.99926 * 1 2 3 32 32 H 1.08997 * 109.47483 * 180.02562 * 1 2 3 33 33 H 1.09006 * 109.47225 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.47238 * 299.99766 * 3 2 1 35 35 H 1.08993 * 109.47635 * 60.00119 * 3 2 1 36 36 H 0.97000 * 120.00133 * 5.30896 * 6 4 2 37 37 H 1.09005 * 109.46875 * 65.00316 * 9 7 6 38 38 H 1.09002 * 109.47437 * 185.00139 * 9 7 6 39 39 H 0.97008 * 119.99517 * 359.97438 * 10 9 7 40 40 H 0.96998 * 119.99609 * 179.97438 * 14 13 11 41 41 H 1.08994 * 110.01443 * 298.86898 * 19 7 6 42 42 H 1.09001 * 110.48845 * 335.78501 * 20 19 7 43 43 H 1.09005 * 110.48708 * 98.42903 * 20 19 7 44 44 H 1.09003 * 110.75597 * 279.63418 * 21 20 19 45 45 H 1.08995 * 110.91772 * 156.33070 * 21 20 19 46 46 H 1.09002 * 110.49184 * 203.37644 * 22 21 20 47 47 H 1.09007 * 110.59646 * 80.79692 * 22 21 20 48 48 H 1.08998 * 110.02875 * 238.57556 * 23 19 7 49 49 H 1.09003 * 110.03162 * 359.97438 * 23 19 7 50 50 H 1.07998 * 125.99453 * 0.03613 * 25 24 2 51 51 H 1.08004 * 125.64911 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2305 5 8 2.6456 -1.7512 -1.1219 6 7 1.8001 -0.1894 -2.4515 7 6 2.1850 -0.9358 -3.6518 8 1 2.7111 -1.8451 -3.3611 9 6 0.9310 -1.3045 -4.4472 10 7 -0.0006 -2.0311 -3.5811 11 6 -1.2005 -2.4654 -4.0779 12 1 -1.4602 -2.2718 -5.1081 13 6 -2.0830 -3.1544 -3.2573 14 7 -1.7662 -3.3908 -2.0019 15 14 -3.7195 -3.7474 -3.9352 16 1 -3.4784 -4.6797 -5.0657 17 1 -4.4725 -4.4509 -2.8660 18 1 -4.5083 -2.5835 -4.4131 19 6 3.1024 -0.0706 -4.5182 20 6 3.5677 -0.8674 -5.7544 21 6 5.0339 -0.4159 -5.9677 22 6 5.5640 -0.2807 -4.5186 23 6 4.3718 0.3024 -3.7324 24 6 2.0323 -0.7104 1.2305 25 6 1.2817 -1.2219 2.2247 26 7 2.1078 -1.7681 3.1293 27 6 3.3417 -1.6151 2.7331 28 7 3.3394 -0.9549 1.5551 29 1 4.1184 -0.7030 1.0350 30 1 -0.3633 0.5140 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 3.1301 1.4424 -0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6768 1.9563 0.8899 36 1 1.3780 0.6799 -2.5355 37 1 0.4530 -0.3959 -4.8135 38 1 1.2087 -1.9349 -5.2919 39 1 0.2325 -2.2047 -2.6556 40 1 -2.3831 -3.8719 -1.4284 41 1 2.5779 0.8323 -4.8307 42 1 3.5233 -1.9385 -5.5569 43 1 2.9602 -0.6132 -6.6230 44 1 5.0716 0.5435 -6.4837 45 1 5.5976 -1.1704 -6.5163 46 1 6.4134 0.4016 -4.4851 47 1 5.8435 -1.2560 -4.1200 48 1 4.4636 1.3864 -3.6643 49 1 4.3339 -0.1326 -2.7337 50 1 0.2036 -1.1968 2.2834 51 1 4.2195 -1.9555 3.2622 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569612377.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:31 Heat of formation + Delta-G solvation = -11.224720 kcal Electronic energy + Delta-G solvation = -30874.130185 eV Core-core repulsion = 27000.741467 eV Total energy + Delta-G solvation = -3873.388718 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.10398 -41.19937 -39.28483 -36.85050 -36.36574 -35.17390 -33.34678 -32.91104 -31.05014 -29.60707 -29.40692 -28.20205 -27.74347 -25.47272 -24.65957 -23.15528 -22.39615 -21.82882 -21.41727 -20.97920 -20.46633 -19.26213 -18.84061 -17.64208 -17.28979 -16.76539 -16.47308 -16.16278 -15.74686 -15.65765 -15.32497 -15.12658 -15.02743 -14.94524 -14.81950 -14.40182 -14.18993 -13.97341 -13.72432 -13.46847 -13.29217 -13.00313 -12.98427 -12.82679 -12.62880 -12.50534 -12.25958 -12.18730 -12.15484 -11.93028 -11.87449 -11.82512 -11.63967 -11.44721 -11.31445 -11.02181 -10.94341 -10.88222 -10.62797 -9.90953 -9.30623 -8.96412 -7.90171 -5.19950 1.10903 1.45828 1.48688 1.55073 1.68139 2.16579 2.28453 2.37215 2.56593 3.42003 3.49742 3.56235 3.70397 3.76883 3.83926 3.92921 3.96369 4.09576 4.17660 4.25592 4.40971 4.52421 4.59588 4.61642 4.66597 4.69152 4.73185 4.74687 4.75866 4.83622 4.84348 4.89527 4.93562 4.96014 5.05167 5.11100 5.16342 5.19122 5.23575 5.28613 5.34599 5.40091 5.49637 5.50260 5.52849 5.66489 5.78061 6.28275 6.56000 6.63743 7.14849 7.32460 7.36212 8.12929 8.35670 9.31325 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.006810 B = 0.005756 C = 0.003427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4110.562119 B = 4863.111969 C = 8169.100452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.004 3.996 3 C -0.133 4.133 4 C 0.525 3.475 5 O -0.580 6.580 6 N -0.696 5.696 7 C 0.151 3.849 8 H 0.062 0.938 9 C 0.140 3.860 10 N -0.740 5.740 11 C -0.245 4.245 12 H 0.075 0.925 13 C -0.071 4.071 14 N -0.962 5.962 15 Si 0.969 3.031 16 H -0.282 1.282 17 H -0.300 1.300 18 H -0.274 1.274 19 C -0.087 4.087 20 C -0.121 4.121 21 C -0.116 4.116 22 C -0.125 4.125 23 C -0.110 4.110 24 C 0.009 3.991 25 C -0.048 4.048 26 N -0.535 5.535 27 C 0.186 3.814 28 N -0.545 5.545 29 H 0.427 0.573 30 H 0.090 0.910 31 H 0.075 0.925 32 H 0.032 0.968 33 H 0.065 0.935 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.409 0.591 37 H 0.035 0.965 38 H 0.026 0.974 39 H 0.373 0.627 40 H 0.247 0.753 41 H 0.094 0.906 42 H 0.047 0.953 43 H 0.075 0.925 44 H 0.082 0.918 45 H 0.068 0.932 46 H 0.079 0.921 47 H 0.047 0.953 48 H 0.082 0.918 49 H 0.044 0.956 50 H 0.161 0.839 51 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.879 16.096 -0.726 22.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.001 4.001 3 C -0.190 4.190 4 C 0.312 3.688 5 O -0.459 6.459 6 N -0.346 5.346 7 C 0.046 3.954 8 H 0.081 0.919 9 C 0.013 3.987 10 N -0.383 5.383 11 C -0.377 4.377 12 H 0.093 0.907 13 C -0.264 4.264 14 N -0.612 5.612 15 Si 0.799 3.201 16 H -0.209 1.209 17 H -0.226 1.226 18 H -0.200 1.200 19 C -0.107 4.107 20 C -0.159 4.159 21 C -0.154 4.154 22 C -0.162 4.162 23 C -0.148 4.148 24 C -0.108 4.108 25 C -0.195 4.195 26 N -0.255 5.255 27 C -0.098 4.098 28 N -0.148 5.148 29 H 0.266 0.734 30 H 0.109 0.891 31 H 0.094 0.906 32 H 0.052 0.948 33 H 0.084 0.916 34 H 0.107 0.893 35 H 0.102 0.898 36 H 0.246 0.754 37 H 0.052 0.948 38 H 0.044 0.956 39 H 0.205 0.795 40 H 0.056 0.944 41 H 0.112 0.888 42 H 0.066 0.934 43 H 0.094 0.906 44 H 0.101 0.899 45 H 0.086 0.914 46 H 0.097 0.903 47 H 0.066 0.934 48 H 0.100 0.900 49 H 0.063 0.937 50 H 0.178 0.822 51 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 15.892 14.935 -0.043 21.808 hybrid contribution -0.889 -0.531 -0.764 1.287 sum 15.004 14.404 -0.807 20.814 Atomic orbital electron populations 1.21726 0.90650 1.02229 1.04017 1.19228 0.97492 0.96597 0.86759 1.21920 1.01560 0.90607 1.04946 1.20737 0.78116 0.84522 0.85419 1.90680 1.42942 1.25169 1.87107 1.45624 1.61802 1.22605 1.04562 1.21212 0.94398 0.95123 0.84663 0.91943 1.21238 0.89686 0.94821 0.92990 1.42487 1.17466 1.67036 1.11333 1.19549 0.94318 1.28176 0.95665 0.90664 1.25517 1.02258 1.02366 0.96251 1.69855 1.37647 1.47225 1.06461 0.85284 0.80092 0.78141 0.76632 1.20875 1.22608 1.19958 1.22026 0.95507 0.98469 0.94685 1.22414 0.97296 0.99040 0.97127 1.22465 0.94515 1.01907 0.96498 1.22357 0.97848 1.00471 0.95546 1.22094 0.93386 1.01253 0.98035 1.20627 0.84630 1.07069 0.98480 1.22150 0.99807 1.03954 0.93617 1.70201 1.01481 1.22942 1.30833 1.25640 0.98265 0.98845 0.87042 1.43019 1.07765 1.44246 1.19722 0.73374 0.89119 0.90645 0.94829 0.91569 0.89318 0.89761 0.75415 0.94752 0.95632 0.79522 0.94380 0.88813 0.93378 0.90607 0.89910 0.91352 0.90250 0.93385 0.89980 0.93721 0.82181 0.73880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.87 7.36 71.98 0.53 -3.34 16 2 C 0.00 0.11 0.87 -53.67 -0.05 0.06 16 3 C -0.13 -2.27 8.30 71.98 0.60 -1.67 16 4 C 0.53 17.35 5.59 87.66 0.49 17.84 16 5 O -0.58 -24.40 15.12 -3.02 -0.05 -24.45 16 6 N -0.70 -19.88 3.74 -442.54 -1.66 -21.54 16 7 C 0.15 4.75 1.73 44.99 0.08 4.83 16 8 H 0.06 2.47 6.89 -2.38 -0.02 2.45 16 9 C 0.14 5.39 5.66 86.38 0.49 5.88 16 10 N -0.74 -37.81 5.43 -343.46 -1.87 -39.68 16 11 C -0.25 -13.74 9.99 84.03 0.84 -12.90 16 12 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 13 C -0.07 -4.14 5.50 84.86 0.47 -3.68 16 14 N -0.96 -60.38 13.06 21.65 0.28 -60.10 16 15 Si 0.97 46.90 29.55 68.60 2.03 48.92 16 16 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 17 H -0.30 -14.79 7.11 99.48 0.71 -14.08 16 18 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 19 C -0.09 -1.91 2.69 -10.07 -0.03 -1.94 16 20 C -0.12 -2.61 5.40 31.67 0.17 -2.43 16 21 C -0.12 -1.96 6.91 31.89 0.22 -1.74 16 22 C -0.12 -2.22 6.83 31.67 0.22 -2.01 16 23 C -0.11 -2.13 6.20 31.32 0.19 -1.93 16 24 C 0.01 0.29 5.04 40.95 0.21 0.50 16 25 C -0.05 -1.68 10.85 83.52 0.91 -0.77 16 26 N -0.53 -18.27 11.25 -200.31 -2.25 -20.52 16 27 C 0.19 4.82 13.04 180.27 2.35 7.17 16 28 N -0.55 -13.87 5.81 -186.50 -1.08 -14.95 16 29 H 0.43 8.62 8.96 -92.71 -0.83 7.79 16 30 H 0.09 2.24 7.86 -2.38 -0.02 2.22 16 31 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.03 1.35 8.06 -2.39 -0.02 1.33 16 33 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 34 H 0.09 1.16 7.18 -2.39 -0.02 1.14 16 35 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.41 9.37 7.80 -92.71 -0.72 8.64 16 37 H 0.03 1.24 8.14 -2.38 -0.02 1.22 16 38 H 0.03 1.02 7.42 -2.39 -0.02 1.00 16 39 H 0.37 21.00 6.83 -92.70 -0.63 20.37 16 40 H 0.25 15.30 8.31 -92.71 -0.77 14.53 16 41 H 0.09 1.73 8.14 -2.39 -0.02 1.72 16 42 H 0.05 1.26 7.74 -2.39 -0.02 1.24 16 43 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 44 H 0.08 1.12 8.14 -2.39 -0.02 1.11 16 45 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 46 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 47 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 48 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 49 H 0.04 1.07 7.11 -2.39 -0.02 1.05 16 50 H 0.16 5.54 7.33 -2.91 -0.02 5.52 16 51 H 0.25 3.78 8.06 -2.91 -0.02 3.75 16 Total: -1.00 -79.50 404.18 1.84 -77.66 By element: Atomic # 1 Polarization: 52.05 SS G_CDS: -1.24 Total: 50.80 kcal Atomic # 6 Polarization: -3.83 SS G_CDS: 7.68 Total: 3.85 kcal Atomic # 7 Polarization: -150.21 SS G_CDS: -6.58 Total: -156.79 kcal Atomic # 8 Polarization: -24.40 SS G_CDS: -0.05 Total: -24.45 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 2.03 Total: 48.92 kcal Total: -79.50 1.84 -77.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569612377.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.434 kcal (2) G-P(sol) polarization free energy of solvation -79.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds