Wall clock time and date at job start Tue Mar 31 2020 19:22:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47350 * 2 1 4 4 C 1.50697 * 109.47017 * 119.99849 * 2 1 3 5 5 C 1.39671 * 126.06972 * 274.71488 * 4 2 1 6 6 C 1.38404 * 105.35917 * 179.84708 * 5 4 2 7 7 C 1.47171 * 126.88670 * 180.13621 * 6 5 4 8 8 O 1.21629 * 120.00395 * 186.65901 * 7 6 5 9 9 N 1.34781 * 119.99571 * 6.66329 * 7 6 5 10 10 C 1.47427 * 125.65027 * 5.53901 * 9 7 6 11 11 C 1.55132 * 104.71974 * 155.81912 * 10 9 7 12 12 C 1.55152 * 101.48324 * 37.29881 * 11 10 9 13 13 C 1.53002 * 110.87333 * 82.76567 * 12 11 10 14 14 C 1.52995 * 110.72036 * 205.96366 * 12 11 10 15 15 N 1.46502 * 109.47406 * 174.97905 * 14 12 11 16 16 C 1.36942 * 119.99818 * 180.02562 * 15 14 12 17 17 H 1.07991 * 120.00029 * 359.97438 * 16 15 14 18 18 C 1.38816 * 119.99425 * 179.97438 * 16 15 14 19 19 N 1.31618 * 120.00114 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99628 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47128 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47046 * 120.00569 * 20 18 16 23 23 H 1.48499 * 109.47072 * 240.00547 * 20 18 16 24 24 C 1.47020 * 125.64457 * 185.85446 * 9 7 6 25 25 N 1.36596 * 106.23383 * 0.40884 * 6 5 4 26 26 C 1.46500 * 125.19653 * 179.73290 * 25 6 5 27 27 N 1.28446 * 109.61555 * 359.73275 * 25 6 5 28 28 H 1.08995 * 109.46894 * 300.00221 * 1 2 3 29 29 H 1.09002 * 109.46898 * 60.00324 * 1 2 3 30 30 H 1.08993 * 109.47191 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47342 * 239.99977 * 2 1 3 32 32 H 1.08995 * 109.47340 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.46856 * 299.99702 * 3 2 1 34 34 H 1.08999 * 109.46917 * 59.99716 * 3 2 1 35 35 H 1.07997 * 127.32015 * 0.02562 * 5 4 2 36 36 H 1.08995 * 110.37102 * 274.75192 * 10 9 7 37 37 H 1.09003 * 110.36167 * 37.07317 * 10 9 7 38 38 H 1.08997 * 111.19242 * 279.19241 * 11 10 9 39 39 H 1.09001 * 110.90124 * 155.27316 * 11 10 9 40 40 H 1.09002 * 109.47020 * 304.93068 * 13 12 11 41 41 H 1.08996 * 109.47392 * 64.93271 * 13 12 11 42 42 H 1.09000 * 109.47409 * 184.93702 * 13 12 11 43 43 H 1.09004 * 109.47543 * 294.98133 * 14 12 11 44 44 H 1.09006 * 109.47023 * 54.97806 * 14 12 11 45 45 H 0.96997 * 119.99898 * 359.97438 * 15 14 12 46 46 H 0.97003 * 119.99858 * 179.97438 * 19 18 16 47 47 H 1.08990 * 109.88160 * 300.43651 * 24 9 7 48 48 H 1.09006 * 109.88203 * 61.44773 * 24 9 7 49 49 H 1.08991 * 109.47360 * 265.19135 * 26 25 6 50 50 H 1.09006 * 109.46792 * 25.18813 * 26 25 6 51 51 H 1.09003 * 109.47466 * 145.18010 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.2189 -0.1390 2.4912 6 6 2.6850 -1.1659 3.2937 7 6 3.0341 -1.0827 4.7210 8 8 3.5475 -2.0343 5.2780 9 7 2.7847 0.0479 5.4109 10 6 2.0671 1.2282 4.8957 11 6 1.5098 1.9335 6.1601 12 6 2.6663 1.7148 7.1709 13 6 3.7609 2.7671 6.9830 14 6 2.1406 1.7342 8.6075 15 7 3.2300 1.4069 9.5308 16 6 2.9948 1.3631 10.8792 17 1 2.0065 1.5702 11.2619 18 6 4.0270 1.0525 11.7539 19 7 5.2317 0.8007 11.2873 20 14 3.7065 0.9934 13.5933 21 1 2.2807 1.3133 13.8578 22 1 4.0115 -0.3667 14.1054 23 1 4.5724 1.9862 14.2787 24 6 3.1890 0.3110 6.7997 25 7 2.7620 -2.2706 2.4940 26 6 3.2151 -3.5953 2.9252 27 7 2.3765 -1.9706 1.3060 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 2.0355 0.8854 2.7795 36 1 2.7529 1.8865 4.3625 37 1 1.2505 0.9204 4.2426 38 1 0.5930 1.4560 6.5059 39 1 1.3492 2.9955 5.9740 40 1 4.1004 2.7573 5.9472 41 1 3.3632 3.7525 7.2257 42 1 4.5992 2.5413 7.6421 43 1 1.7535 2.7264 8.8395 44 1 1.3424 0.9992 8.7123 45 1 4.1176 1.2206 9.1869 46 1 5.9530 0.5840 11.8986 47 1 2.7494 -0.4352 7.4614 48 1 4.2757 0.2840 6.8809 49 1 4.2763 -3.7065 2.7030 50 1 3.0554 -3.7024 3.9982 51 1 2.6506 -4.3627 2.3956 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569689065.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:47 Heat of formation + Delta-G solvation = 52.873170 kcal Electronic energy + Delta-G solvation = -29669.178104 eV Core-core repulsion = 25798.568880 eV Total energy + Delta-G solvation = -3870.609225 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 5.87 seconds Orbital eigenvalues (eV) -42.75541 -40.07028 -38.01271 -36.18810 -34.94209 -33.06138 -32.38219 -31.11768 -30.49243 -29.11256 -27.47290 -26.95253 -26.65081 -25.72198 -24.15509 -22.98239 -22.18957 -21.81884 -20.51257 -19.01299 -18.73221 -17.44894 -16.81608 -16.56640 -16.47185 -15.84417 -15.57573 -14.81135 -14.58400 -14.44427 -14.21505 -14.13624 -13.88179 -13.60178 -13.53581 -13.18125 -12.99709 -12.81193 -12.71332 -12.59435 -12.38835 -12.14851 -11.97599 -11.82663 -11.68948 -11.62138 -11.45492 -11.38996 -11.03946 -10.86053 -10.74257 -10.54216 -10.43989 -10.31792 -10.04463 -9.92501 -9.64468 -9.26312 -9.04318 -8.88911 -8.60120 -6.92801 -5.76660 -3.05479 1.16183 2.19300 2.38231 3.01796 3.13479 3.43630 3.49173 3.51487 4.12470 4.22601 4.52274 4.58376 4.60090 4.78306 4.80596 4.89669 4.94138 5.02149 5.10571 5.14008 5.25825 5.28652 5.32502 5.36380 5.41311 5.43102 5.47440 5.57583 5.57806 5.63727 5.67285 5.75950 5.84347 5.96980 5.98118 6.03279 6.03973 6.07373 6.13471 6.24697 6.32282 6.34767 6.45479 6.57605 6.60720 6.70729 6.79675 7.42807 7.70485 7.89005 8.06494 8.41840 9.53451 10.09999 10.44437 11.46137 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.019551 B = 0.002570 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.774193 B =10892.709093 C =11809.056497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.009 4.009 3 C -0.144 4.144 4 C 0.029 3.971 5 C -0.194 4.194 6 C -0.026 4.026 7 C 0.599 3.401 8 O -0.539 6.539 9 N -0.598 5.598 10 C 0.090 3.910 11 C -0.123 4.123 12 C -0.077 4.077 13 C -0.132 4.132 14 C 0.169 3.831 15 N -0.731 5.731 16 C -0.239 4.239 17 H 0.071 0.929 18 C -0.013 4.013 19 N -0.932 5.932 20 Si 0.906 3.094 21 H -0.281 1.281 22 H -0.292 1.292 23 H -0.292 1.292 24 C 0.124 3.876 25 N -0.258 5.258 26 C 0.084 3.916 27 N -0.279 5.279 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.082 0.918 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.168 0.832 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.046 0.954 41 H 0.058 0.942 42 H 0.070 0.930 43 H 0.025 0.975 44 H 0.021 0.979 45 H 0.385 0.615 46 H 0.255 0.745 47 H 0.080 0.920 48 H 0.074 0.926 49 H 0.084 0.916 50 H 0.113 0.887 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.525 0.807 -24.568 26.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.029 4.029 3 C -0.202 4.202 4 C -0.127 4.127 5 C -0.222 4.222 6 C -0.155 4.155 7 C 0.386 3.614 8 O -0.417 6.417 9 N -0.331 5.331 10 C -0.033 4.033 11 C -0.162 4.162 12 C -0.078 4.078 13 C -0.189 4.189 14 C 0.041 3.959 15 N -0.376 5.376 16 C -0.371 4.371 17 H 0.088 0.912 18 C -0.209 4.209 19 N -0.580 5.580 20 Si 0.737 3.263 21 H -0.206 1.206 22 H -0.219 1.219 23 H -0.219 1.219 24 C 0.003 3.997 25 N -0.045 5.045 26 C -0.056 4.056 27 N -0.112 5.112 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.101 0.899 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.185 0.815 36 H 0.092 0.908 37 H 0.102 0.898 38 H 0.098 0.902 39 H 0.105 0.895 40 H 0.065 0.935 41 H 0.077 0.923 42 H 0.089 0.911 43 H 0.043 0.957 44 H 0.039 0.961 45 H 0.219 0.781 46 H 0.065 0.935 47 H 0.099 0.901 48 H 0.092 0.908 49 H 0.103 0.897 50 H 0.131 0.869 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -8.156 -0.923 -24.688 26.017 hybrid contribution 0.246 0.470 1.468 1.561 sum -7.910 -0.453 -23.221 24.535 Atomic orbital electron populations 1.21813 0.93944 1.02128 1.02080 1.19408 0.95617 0.94962 0.92909 1.21831 1.01410 0.94676 1.02253 1.21941 1.04243 0.90173 0.96363 1.22507 1.06790 1.00122 0.92808 1.21355 1.11054 0.89150 0.93902 1.16492 0.79120 0.82131 0.83615 1.90808 1.44841 1.35781 1.70270 1.48145 1.55625 1.14640 1.14697 1.22822 0.96037 0.86919 0.97495 1.22933 0.98311 1.01114 0.93811 1.21839 0.95511 0.93811 0.96653 1.21762 0.98517 0.97862 1.00792 1.20643 0.91698 0.97718 0.85842 1.42380 1.08199 1.84285 1.02692 1.19246 0.95263 1.39711 0.82836 0.91151 1.24737 0.95653 1.02536 0.97987 1.69663 1.00601 1.54194 1.33578 0.86132 0.77237 0.77201 0.85695 1.20588 1.21899 1.21897 1.22159 1.00576 0.97093 0.79895 1.45526 1.44511 1.09623 1.04856 1.22375 1.01196 0.78504 1.03481 1.73094 1.17173 1.17977 1.02934 0.92285 0.92030 0.92595 0.89942 0.92371 0.91924 0.92112 0.81462 0.90793 0.89808 0.90182 0.89493 0.93464 0.92275 0.91126 0.95697 0.96135 0.78112 0.93541 0.90136 0.90786 0.89723 0.86880 0.89096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 9.18 37.16 0.34 -0.63 16 2 C -0.01 -0.07 3.38 -91.77 -0.31 -0.38 16 3 C -0.14 -0.91 8.78 37.16 0.33 -0.59 16 4 C 0.03 0.32 6.13 -82.47 -0.51 -0.18 16 5 C -0.19 -2.15 8.42 -38.99 -0.33 -2.48 16 6 C -0.03 -0.35 6.89 -82.06 -0.57 -0.92 16 7 C 0.60 9.37 7.81 -12.63 -0.10 9.27 16 8 O -0.54 -10.01 15.01 5.25 0.08 -9.93 16 9 N -0.60 -8.52 3.32 -171.74 -0.57 -9.09 16 10 C 0.09 0.93 4.82 -2.41 -0.01 0.92 16 11 C -0.12 -1.35 6.04 -24.46 -0.15 -1.49 16 12 C -0.08 -1.14 0.61 -152.68 -0.09 -1.24 16 13 C -0.13 -1.89 8.26 37.16 0.31 -1.58 16 14 C 0.17 3.19 5.07 -4.04 -0.02 3.17 16 15 N -0.73 -17.81 5.15 -59.91 -0.31 -18.12 16 16 C -0.24 -6.59 9.99 -15.06 -0.15 -6.74 16 17 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 18 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 19 N -0.93 -28.07 13.06 55.49 0.72 -27.34 16 20 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 23 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 24 C 0.12 2.06 5.47 -3.06 -0.02 2.04 16 25 N -0.26 -3.38 3.75 -63.88 -0.24 -3.62 16 26 C 0.08 0.89 10.90 59.85 0.65 1.54 16 27 N -0.28 -3.58 11.90 33.64 0.40 -3.18 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.06 0.35 7.36 -51.93 -0.38 -0.03 16 35 H 0.17 1.45 4.45 -52.49 -0.23 1.22 16 36 H 0.07 0.66 7.35 -51.93 -0.38 0.28 16 37 H 0.08 0.74 5.92 -51.93 -0.31 0.43 16 38 H 0.08 0.88 8.04 -51.93 -0.42 0.46 16 39 H 0.09 0.77 8.04 -51.93 -0.42 0.35 16 40 H 0.05 0.58 7.44 -51.93 -0.39 0.19 16 41 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.07 1.21 7.11 -51.93 -0.37 0.84 16 43 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.02 0.40 8.13 -51.93 -0.42 -0.02 16 45 H 0.38 9.88 6.37 -40.82 -0.26 9.62 16 46 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 47 H 0.08 1.55 7.82 -51.93 -0.41 1.14 16 48 H 0.07 1.34 7.85 -51.93 -0.41 0.94 16 49 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 50 H 0.11 1.33 6.19 -51.93 -0.32 1.00 16 51 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 399.93 15.07 6.03 6.03 Total: -1.00 -33.45 399.93 -8.12 -41.57 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -8.49 Total: 6.09 kcal Atomic # 6 Polarization: 0.95 SS G_CDS: -0.72 Total: 0.24 kcal Atomic # 7 Polarization: -61.36 SS G_CDS: 0.01 Total: -61.35 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.08 Total: -9.93 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -33.45 -8.12 -41.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569689065.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.438 kcal (2) G-P(sol) polarization free energy of solvation -33.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.87 seconds