Wall clock time and date at job start Tue Mar 31 2020 19:22:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47350 * 2 1 4 4 C 1.50697 * 109.47017 * 119.99849 * 2 1 3 5 5 C 1.39671 * 126.06972 * 274.71488 * 4 2 1 6 6 C 1.38404 * 105.35917 * 179.84708 * 5 4 2 7 7 C 1.47171 * 126.88670 * 180.13621 * 6 5 4 8 8 O 1.21629 * 120.00395 * 186.65901 * 7 6 5 9 9 N 1.34781 * 119.99571 * 6.66329 * 7 6 5 10 10 C 1.47427 * 125.65027 * 5.53901 * 9 7 6 11 11 C 1.55132 * 104.71974 * 155.81912 * 10 9 7 12 12 C 1.55152 * 101.48324 * 37.29881 * 11 10 9 13 13 C 1.53002 * 110.87333 * 82.76567 * 12 11 10 14 14 C 1.52995 * 110.72036 * 205.96366 * 12 11 10 15 15 N 1.46502 * 109.47406 * 174.97905 * 14 12 11 16 16 C 1.36942 * 119.99818 * 180.02562 * 15 14 12 17 17 H 1.07991 * 120.00029 * 359.97438 * 16 15 14 18 18 C 1.38816 * 119.99425 * 179.97438 * 16 15 14 19 19 N 1.31618 * 120.00114 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99628 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47128 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47046 * 120.00569 * 20 18 16 23 23 H 1.48499 * 109.47072 * 240.00547 * 20 18 16 24 24 C 1.47020 * 125.64457 * 185.85446 * 9 7 6 25 25 N 1.36596 * 106.23383 * 0.40884 * 6 5 4 26 26 C 1.46500 * 125.19653 * 179.73290 * 25 6 5 27 27 N 1.28446 * 109.61555 * 359.73275 * 25 6 5 28 28 H 1.08995 * 109.46894 * 300.00221 * 1 2 3 29 29 H 1.09002 * 109.46898 * 60.00324 * 1 2 3 30 30 H 1.08993 * 109.47191 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47342 * 239.99977 * 2 1 3 32 32 H 1.08995 * 109.47340 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.46856 * 299.99702 * 3 2 1 34 34 H 1.08999 * 109.46917 * 59.99716 * 3 2 1 35 35 H 1.07997 * 127.32015 * 0.02562 * 5 4 2 36 36 H 1.08995 * 110.37102 * 274.75192 * 10 9 7 37 37 H 1.09003 * 110.36167 * 37.07317 * 10 9 7 38 38 H 1.08997 * 111.19242 * 279.19241 * 11 10 9 39 39 H 1.09001 * 110.90124 * 155.27316 * 11 10 9 40 40 H 1.09002 * 109.47020 * 304.93068 * 13 12 11 41 41 H 1.08996 * 109.47392 * 64.93271 * 13 12 11 42 42 H 1.09000 * 109.47409 * 184.93702 * 13 12 11 43 43 H 1.09004 * 109.47543 * 294.98133 * 14 12 11 44 44 H 1.09006 * 109.47023 * 54.97806 * 14 12 11 45 45 H 0.96997 * 119.99898 * 359.97438 * 15 14 12 46 46 H 0.97003 * 119.99858 * 179.97438 * 19 18 16 47 47 H 1.08990 * 109.88160 * 300.43651 * 24 9 7 48 48 H 1.09006 * 109.88203 * 61.44773 * 24 9 7 49 49 H 1.08991 * 109.47360 * 265.19135 * 26 25 6 50 50 H 1.09006 * 109.46792 * 25.18813 * 26 25 6 51 51 H 1.09003 * 109.47466 * 145.18010 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.2189 -0.1390 2.4912 6 6 2.6850 -1.1659 3.2937 7 6 3.0341 -1.0827 4.7210 8 8 3.5475 -2.0343 5.2780 9 7 2.7847 0.0479 5.4109 10 6 2.0671 1.2282 4.8957 11 6 1.5098 1.9335 6.1601 12 6 2.6663 1.7148 7.1709 13 6 3.7609 2.7671 6.9830 14 6 2.1406 1.7342 8.6075 15 7 3.2300 1.4069 9.5308 16 6 2.9948 1.3631 10.8792 17 1 2.0065 1.5702 11.2619 18 6 4.0270 1.0525 11.7539 19 7 5.2317 0.8007 11.2873 20 14 3.7065 0.9934 13.5933 21 1 2.2807 1.3133 13.8578 22 1 4.0115 -0.3667 14.1054 23 1 4.5724 1.9862 14.2787 24 6 3.1890 0.3110 6.7997 25 7 2.7620 -2.2706 2.4940 26 6 3.2151 -3.5953 2.9252 27 7 2.3765 -1.9706 1.3060 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 2.0355 0.8854 2.7795 36 1 2.7529 1.8865 4.3625 37 1 1.2505 0.9204 4.2426 38 1 0.5930 1.4560 6.5059 39 1 1.3492 2.9955 5.9740 40 1 4.1004 2.7573 5.9472 41 1 3.3632 3.7525 7.2257 42 1 4.5992 2.5413 7.6421 43 1 1.7535 2.7264 8.8395 44 1 1.3424 0.9992 8.7123 45 1 4.1176 1.2206 9.1869 46 1 5.9530 0.5840 11.8986 47 1 2.7494 -0.4352 7.4614 48 1 4.2757 0.2840 6.8809 49 1 4.2763 -3.7065 2.7030 50 1 3.0554 -3.7024 3.9982 51 1 2.6506 -4.3627 2.3956 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569689065.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:44 Heat of formation + Delta-G solvation = 31.358571 kcal Electronic energy + Delta-G solvation = -29670.111047 eV Core-core repulsion = 25798.568880 eV Total energy + Delta-G solvation = -3871.542168 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -43.67929 -41.24058 -39.26865 -36.91082 -36.50299 -34.60143 -33.28854 -32.49504 -31.86000 -30.32655 -28.08592 -27.84812 -27.69949 -27.31071 -25.53279 -24.20779 -23.30668 -22.89561 -21.41733 -20.21784 -19.76534 -19.17829 -18.02916 -17.69211 -17.48759 -16.89624 -16.69842 -16.51346 -15.65109 -15.56199 -15.30829 -15.10409 -15.06622 -14.90543 -14.79325 -14.39665 -14.18457 -13.85978 -13.57409 -13.49829 -13.44966 -13.26305 -13.06305 -12.89235 -12.81928 -12.76907 -12.69140 -12.27646 -12.13696 -12.09801 -12.00954 -11.96653 -11.77322 -11.50752 -11.47643 -11.27091 -11.22074 -10.94814 -10.27111 -9.92731 -9.74333 -8.97514 -7.94377 -5.22267 0.13752 1.23593 1.46505 1.47569 1.51829 1.57295 1.96738 2.02246 2.56004 3.17421 3.38439 3.39579 3.51939 3.60319 3.82001 3.89669 4.12794 4.14372 4.20855 4.25999 4.27899 4.35881 4.37809 4.39240 4.45348 4.53759 4.57532 4.60616 4.72637 4.73883 4.80763 4.90777 4.95253 4.97661 5.07473 5.08716 5.09377 5.12975 5.21549 5.23147 5.26247 5.31442 5.44910 5.50154 5.50371 5.53773 5.56787 5.69079 6.27955 6.30559 6.82748 7.03953 7.34663 8.11714 8.33362 9.29458 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.019551 B = 0.002570 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.774193 B =10892.709093 C =11809.056497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.009 4.009 3 C -0.142 4.142 4 C 0.028 3.972 5 C -0.176 4.176 6 C -0.050 4.050 7 C 0.593 3.407 8 O -0.583 6.583 9 N -0.596 5.596 10 C 0.086 3.914 11 C -0.111 4.111 12 C -0.069 4.069 13 C -0.125 4.125 14 C 0.166 3.834 15 N -0.743 5.743 16 C -0.239 4.239 17 H 0.077 0.923 18 C -0.078 4.078 19 N -0.971 5.971 20 Si 0.971 3.029 21 H -0.264 1.264 22 H -0.298 1.298 23 H -0.293 1.293 24 C 0.132 3.868 25 N -0.270 5.270 26 C 0.083 3.917 27 N -0.295 5.295 28 H 0.063 0.937 29 H 0.080 0.920 30 H 0.041 0.959 31 H 0.080 0.920 32 H 0.049 0.951 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.197 0.803 36 H 0.101 0.899 37 H 0.108 0.892 38 H 0.081 0.919 39 H 0.123 0.877 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.031 0.969 43 H 0.037 0.963 44 H 0.016 0.984 45 H 0.374 0.626 46 H 0.249 0.751 47 H 0.042 0.958 48 H 0.047 0.953 49 H 0.090 0.910 50 H 0.095 0.905 51 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.791 3.257 -26.784 29.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.029 4.029 3 C -0.200 4.200 4 C -0.129 4.129 5 C -0.204 4.204 6 C -0.178 4.178 7 C 0.382 3.618 8 O -0.465 6.465 9 N -0.328 5.328 10 C -0.035 4.035 11 C -0.149 4.149 12 C -0.070 4.070 13 C -0.182 4.182 14 C 0.040 3.960 15 N -0.386 5.386 16 C -0.371 4.371 17 H 0.095 0.905 18 C -0.270 4.270 19 N -0.622 5.622 20 Si 0.801 3.199 21 H -0.188 1.188 22 H -0.226 1.226 23 H -0.220 1.220 24 C 0.009 3.991 25 N -0.057 5.057 26 C -0.057 4.057 27 N -0.128 5.128 28 H 0.082 0.918 29 H 0.099 0.901 30 H 0.060 0.940 31 H 0.098 0.902 32 H 0.069 0.931 33 H 0.098 0.902 34 H 0.090 0.910 35 H 0.214 0.786 36 H 0.119 0.881 37 H 0.126 0.874 38 H 0.100 0.900 39 H 0.142 0.858 40 H 0.092 0.908 41 H 0.093 0.907 42 H 0.050 0.950 43 H 0.055 0.945 44 H 0.033 0.967 45 H 0.206 0.794 46 H 0.058 0.942 47 H 0.061 0.939 48 H 0.065 0.935 49 H 0.109 0.891 50 H 0.114 0.886 51 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -10.487 1.566 -26.936 28.947 hybrid contribution 0.890 -0.308 2.069 2.273 sum -9.597 1.258 -24.867 26.684 Atomic orbital electron populations 1.21798 0.92920 1.01611 1.03309 1.19568 0.96361 0.95716 0.91279 1.21841 1.00926 0.93475 1.03715 1.22553 1.03189 0.89647 0.97472 1.22844 1.04835 1.00654 0.92108 1.21231 1.13101 0.90497 0.92961 1.16889 0.78522 0.81830 0.84567 1.90780 1.46887 1.37440 1.71365 1.48174 1.55434 1.15541 1.13607 1.23178 0.96988 0.85594 0.97704 1.22966 0.96283 1.03529 0.92079 1.21722 0.97435 0.92668 0.95178 1.21691 0.96935 0.98069 1.01532 1.20832 0.90154 0.97643 0.87413 1.42604 1.09152 1.84205 1.02668 1.19673 0.95285 1.37746 0.84413 0.90492 1.25553 0.95646 1.03501 1.02318 1.69827 1.01447 1.56203 1.34698 0.85100 0.77764 0.76513 0.80561 1.18848 1.22561 1.21974 1.21854 0.98688 0.97476 0.81050 1.45737 1.44932 1.10092 1.04950 1.22424 1.01995 0.78600 1.02666 1.73104 1.17656 1.19219 1.02842 0.91799 0.90074 0.94004 0.90186 0.93148 0.90180 0.91014 0.78629 0.88067 0.87414 0.90046 0.85847 0.90816 0.90742 0.94964 0.94469 0.96653 0.79351 0.94168 0.93924 0.93502 0.89124 0.88647 0.86955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 9.18 71.98 0.66 -0.81 16 2 C -0.01 -0.12 3.38 -11.54 -0.04 -0.16 16 3 C -0.14 -1.25 8.78 71.98 0.63 -0.62 16 4 C 0.03 0.55 6.13 43.05 0.26 0.82 16 5 C -0.18 -3.42 8.42 22.66 0.19 -3.23 16 6 C -0.05 -1.32 6.89 40.79 0.28 -1.04 16 7 C 0.59 18.86 7.81 86.59 0.68 19.54 16 8 O -0.58 -23.09 15.01 -4.12 -0.06 -23.15 16 9 N -0.60 -16.62 3.32 -815.50 -2.71 -19.33 16 10 C 0.09 1.46 4.82 86.93 0.42 1.88 16 11 C -0.11 -1.99 6.04 32.06 0.19 -1.80 16 12 C -0.07 -1.97 0.61 -51.00 -0.03 -2.00 16 13 C -0.13 -3.38 8.26 71.98 0.59 -2.78 16 14 C 0.17 6.22 5.07 86.38 0.44 6.65 16 15 N -0.74 -37.13 5.15 -343.44 -1.77 -38.90 16 16 C -0.24 -13.32 9.99 84.03 0.84 -12.48 16 17 H 0.08 4.10 7.83 -2.92 -0.02 4.07 16 18 C -0.08 -4.54 5.50 84.86 0.47 -4.07 16 19 N -0.97 -60.48 13.06 21.65 0.28 -60.19 16 20 Si 0.97 46.75 29.55 68.60 2.03 48.77 16 21 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 22 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 23 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 24 C 0.13 4.53 5.47 86.73 0.47 5.00 16 25 N -0.27 -7.00 3.75 -356.02 -1.33 -8.33 16 26 C 0.08 1.80 10.90 127.77 1.39 3.19 16 27 N -0.30 -7.27 11.90 -47.50 -0.57 -7.83 16 28 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.08 0.45 8.14 -2.39 -0.02 0.44 16 34 H 0.07 0.48 7.36 -2.39 -0.02 0.47 16 35 H 0.20 2.45 4.45 -2.91 -0.01 2.44 16 36 H 0.10 1.26 7.35 -2.39 -0.02 1.24 16 37 H 0.11 1.39 5.92 -2.39 -0.01 1.37 16 38 H 0.08 1.50 8.04 -2.39 -0.02 1.48 16 39 H 0.12 1.44 8.04 -2.39 -0.02 1.42 16 40 H 0.07 1.59 7.44 -2.39 -0.02 1.57 16 41 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.03 1.11 7.11 -2.39 -0.02 1.10 16 43 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.02 0.60 8.13 -2.38 -0.02 0.58 16 45 H 0.37 20.14 6.37 -92.71 -0.59 19.55 16 46 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 47 H 0.04 1.76 7.82 -2.39 -0.02 1.74 16 48 H 0.05 1.83 7.85 -2.38 -0.02 1.81 16 49 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 50 H 0.09 2.43 6.19 -2.38 -0.01 2.41 16 51 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -76.79 399.93 3.66 -73.13 By element: Atomic # 1 Polarization: 27.40 SS G_CDS: 0.34 Total: 27.74 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: 7.45 Total: 8.10 kcal Atomic # 7 Polarization: -128.49 SS G_CDS: -6.10 Total: -134.59 kcal Atomic # 8 Polarization: -23.09 SS G_CDS: -0.06 Total: -23.15 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 2.03 Total: 48.77 kcal Total: -76.79 3.66 -73.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569689065.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.488 kcal (2) G-P(sol) polarization free energy of solvation -76.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds