Wall clock time and date at job start Tue Mar 31 2020 20:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46907 * 2 1 4 4 C 1.50705 * 109.47284 * 180.02562 * 3 2 1 5 5 N 1.30445 * 125.98688 * 270.14731 * 4 3 2 6 6 N 1.39939 * 108.89188 * 180.25672 * 5 4 3 7 7 H 0.97002 * 125.74961 * 179.77006 * 6 5 4 8 8 C 1.34251 * 108.49375 * 359.75498 * 6 5 4 9 9 C 1.38051 * 107.41905 * 359.97438 * 8 6 5 10 10 C 1.47427 * 126.41486 * 179.97438 * 9 8 6 11 11 O 1.21600 * 119.99764 * 180.02562 * 10 9 8 12 12 N 1.34779 * 119.99900 * 0.03164 * 10 9 8 13 13 C 1.46500 * 119.99793 * 179.97438 * 12 10 9 14 14 H 1.09002 * 109.47092 * 34.99824 * 13 12 10 15 15 C 1.52997 * 109.47007 * 154.99772 * 13 12 10 16 16 C 1.52999 * 109.47317 * 179.97438 * 15 13 12 17 17 C 1.53005 * 109.47159 * 300.00546 * 16 15 13 18 18 H 1.09002 * 109.46935 * 299.99411 * 17 16 15 19 19 C 1.53002 * 109.46982 * 179.97438 * 17 16 15 20 20 N 1.46501 * 109.46932 * 174.99795 * 19 17 16 21 21 C 1.36937 * 120.00070 * 180.02562 * 20 19 17 22 22 H 1.08004 * 119.99484 * 359.97438 * 21 20 19 23 23 C 1.38807 * 120.00222 * 180.02562 * 21 20 19 24 24 N 1.31619 * 119.99862 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00067 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47386 * 359.97438 * 25 23 21 27 27 H 1.48495 * 109.47257 * 120.00063 * 25 23 21 28 28 H 1.48503 * 109.46891 * 239.99888 * 25 23 21 29 29 C 1.52997 * 109.47452 * 59.99536 * 17 16 15 30 30 C 1.53000 * 109.47023 * 274.99565 * 13 12 10 31 31 H 1.08998 * 109.47048 * 300.00428 * 1 2 3 32 32 H 1.09003 * 109.47065 * 60.00016 * 1 2 3 33 33 H 1.08999 * 109.46660 * 180.02562 * 1 2 3 34 34 H 1.08998 * 109.47363 * 240.00017 * 2 1 3 35 35 H 1.09000 * 109.47436 * 119.99640 * 2 1 3 36 36 H 1.08998 * 109.47616 * 59.99920 * 3 2 1 37 37 H 1.09003 * 109.47245 * 299.99874 * 3 2 1 38 38 H 1.08002 * 126.29148 * 180.02562 * 8 6 5 39 39 H 0.97004 * 119.99983 * 359.97438 * 12 10 9 40 40 H 1.08996 * 109.47853 * 300.00060 * 15 13 12 41 41 H 1.09002 * 109.47153 * 60.00089 * 15 13 12 42 42 H 1.09002 * 109.46716 * 60.00091 * 16 15 13 43 43 H 1.09000 * 109.47486 * 180.02562 * 16 15 13 44 44 H 1.08997 * 109.47011 * 294.99798 * 19 17 16 45 45 H 1.08999 * 109.47369 * 54.99905 * 19 17 16 46 46 H 0.96998 * 120.00102 * 359.97438 * 20 19 17 47 47 H 0.97004 * 120.00138 * 179.97438 * 24 23 21 48 48 H 1.09002 * 109.46695 * 59.99734 * 29 17 16 49 49 H 1.08993 * 109.47194 * 179.97438 * 29 17 16 50 50 H 1.08992 * 109.47399 * 300.00063 * 30 13 12 51 51 H 1.09004 * 109.46724 * 60.00549 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4426 -0.0006 5 7 4.3140 1.4398 1.0545 6 7 5.6514 1.4470 0.6426 7 1 6.4247 1.4498 1.2282 8 6 5.6836 1.4488 -0.6995 9 6 4.3767 1.4423 -1.1443 10 6 3.9304 1.4422 -2.5494 11 8 2.7427 1.4365 -2.8100 12 7 4.8389 1.4483 -3.5449 13 6 4.3954 1.4476 -4.9412 14 1 3.4799 2.0322 -5.0319 15 6 5.4837 2.0642 -5.8223 16 6 5.0209 2.0629 -7.2806 17 6 4.7547 0.6248 -7.7299 18 1 5.6703 0.0403 -7.6389 19 6 4.2913 0.6236 -9.1881 20 7 4.1513 -0.7580 -9.6548 21 6 3.7454 -1.0093 -10.9383 22 1 3.5281 -0.1889 -11.6063 23 6 3.6122 -2.3183 -11.3804 24 7 3.8765 -3.3180 -10.5662 25 14 3.0578 -2.6611 -13.1310 26 1 2.8256 -1.3756 -13.8374 27 1 4.1088 -3.4336 -13.8408 28 1 1.7977 -3.4465 -13.1064 29 6 3.6664 0.0082 -6.8489 30 6 4.1290 0.0097 -5.3910 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3632 -1.0277 0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 1.6767 1.9564 0.8899 37 1 1.6767 1.9564 -0.8900 38 1 6.5692 1.4536 -1.3177 39 1 5.7864 1.4531 -3.3370 40 1 5.6737 3.0885 -5.5019 41 1 6.3992 1.4795 -5.7315 42 1 4.1053 2.6473 -7.3716 43 1 5.7964 2.5017 -7.9083 44 1 3.3302 1.1320 -9.2642 45 1 5.0264 1.1422 -9.8034 46 1 4.3467 -1.4947 -9.0550 47 1 3.7830 -4.2328 -10.8750 48 1 2.7509 0.5927 -6.9400 49 1 3.4765 -1.0161 -7.1693 50 1 5.0444 -0.5749 -5.3003 51 1 3.3536 -0.4295 -4.7633 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570041542.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:58 Heat of formation + Delta-G solvation = -14.669732 kcal Electronic energy + Delta-G solvation = -28663.721700 eV Core-core repulsion = 24790.183595 eV Total energy + Delta-G solvation = -3873.538105 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.43159 -40.68238 -39.17699 -36.71427 -36.14764 -35.02928 -33.17991 -32.56688 -31.74772 -31.54587 -30.05137 -28.06162 -26.75775 -24.80480 -24.01533 -23.39400 -22.90245 -21.98774 -21.25789 -20.91395 -20.42796 -19.34671 -19.09775 -17.42230 -17.02947 -16.66095 -16.30375 -16.06039 -15.84389 -15.57862 -15.38004 -15.27649 -15.21159 -14.94835 -14.66694 -14.54515 -14.23037 -13.94041 -13.73310 -13.44409 -13.17256 -13.05052 -12.89373 -12.85312 -12.76282 -12.46561 -12.18899 -12.10128 -12.01203 -11.99210 -11.94818 -11.87538 -11.58473 -11.41361 -11.20865 -11.10517 -10.89391 -10.69831 -10.51399 -10.05565 -9.69080 -8.96465 -7.94115 -5.22045 0.58311 1.09635 1.46916 1.48151 1.58190 1.82199 2.32271 2.50922 2.56891 3.39371 3.46053 3.75062 3.77403 3.80529 3.97744 4.10815 4.11475 4.17221 4.21263 4.24505 4.36881 4.44087 4.48785 4.54780 4.59039 4.59600 4.63887 4.66054 4.83863 4.86076 4.90612 4.98163 4.99734 5.11142 5.12308 5.16946 5.20134 5.27182 5.29749 5.32430 5.37158 5.40415 5.45474 5.48913 5.57999 5.62841 5.68392 6.29082 6.29092 6.50866 6.77291 7.34895 7.43504 8.13227 8.35971 9.29881 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.016776 B = 0.002118 C = 0.001974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.611716 B =13218.100226 C =14181.000542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.104 4.104 3 C -0.043 4.043 4 C 0.122 3.878 5 N -0.325 5.325 6 N -0.447 5.447 7 H 0.461 0.539 8 C 0.138 3.862 9 C -0.319 4.319 10 C 0.589 3.411 11 O -0.580 6.580 12 N -0.709 5.709 13 C 0.156 3.844 14 H 0.067 0.933 15 C -0.110 4.110 16 C -0.102 4.102 17 C -0.082 4.082 18 H 0.067 0.933 19 C 0.153 3.847 20 N -0.745 5.745 21 C -0.243 4.243 22 H 0.074 0.926 23 C -0.079 4.079 24 N -0.970 5.970 25 Si 0.973 3.027 26 H -0.266 1.266 27 H -0.291 1.291 28 H -0.294 1.294 29 C -0.101 4.101 30 C -0.116 4.116 31 H 0.067 0.933 32 H 0.049 0.951 33 H 0.059 0.941 34 H 0.044 0.956 35 H 0.061 0.939 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.237 0.763 39 H 0.413 0.587 40 H 0.091 0.909 41 H 0.085 0.915 42 H 0.062 0.938 43 H 0.081 0.919 44 H 0.013 0.987 45 H 0.022 0.978 46 H 0.374 0.626 47 H 0.251 0.749 48 H 0.049 0.951 49 H 0.038 0.962 50 H 0.070 0.930 51 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.915 14.196 26.013 30.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.143 4.143 3 C -0.083 4.083 4 C -0.046 4.046 5 N -0.148 5.148 6 N -0.153 5.153 7 H 0.310 0.690 8 C -0.017 4.017 9 C -0.335 4.335 10 C 0.377 3.623 11 O -0.460 6.460 12 N -0.361 5.361 13 C 0.051 3.949 14 H 0.085 0.915 15 C -0.148 4.148 16 C -0.141 4.141 17 C -0.101 4.101 18 H 0.086 0.914 19 C 0.026 3.974 20 N -0.388 5.388 21 C -0.375 4.375 22 H 0.092 0.908 23 C -0.271 4.271 24 N -0.622 5.622 25 Si 0.802 3.198 26 H -0.190 1.190 27 H -0.219 1.219 28 H -0.222 1.222 29 C -0.139 4.139 30 C -0.155 4.155 31 H 0.086 0.914 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.063 0.937 35 H 0.080 0.920 36 H 0.102 0.898 37 H 0.102 0.898 38 H 0.253 0.747 39 H 0.250 0.750 40 H 0.109 0.891 41 H 0.104 0.896 42 H 0.081 0.919 43 H 0.100 0.900 44 H 0.031 0.969 45 H 0.040 0.960 46 H 0.206 0.794 47 H 0.059 0.941 48 H 0.068 0.932 49 H 0.057 0.943 50 H 0.089 0.911 51 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 7.074 14.283 26.953 31.313 hybrid contribution 0.232 -1.066 -1.458 1.821 sum 7.306 13.217 25.495 29.632 Atomic orbital electron populations 1.21725 0.94418 1.02161 1.02170 1.21285 0.96819 0.95111 1.01070 1.20155 0.85845 0.98623 1.03628 1.22583 0.97370 0.95190 0.89460 1.77121 0.87765 1.27257 1.22662 1.46160 1.07392 1.55616 1.06122 0.69045 1.23794 0.99031 0.93163 0.85676 1.20330 0.93759 1.25814 0.93549 1.17545 0.85384 0.74908 0.84424 1.90749 1.18184 1.52258 1.84830 1.45707 1.09994 1.75336 1.05018 1.20827 0.98637 0.95398 0.80044 0.91489 1.21712 0.97613 1.02229 0.93264 1.21433 1.02113 0.94398 0.96119 1.21240 0.98085 0.97872 0.92926 0.91414 1.20901 0.96972 0.85648 0.93854 1.42627 1.81424 1.03122 1.11595 1.19698 1.35689 0.91989 0.90113 0.90786 1.25574 1.03744 0.95548 1.02203 1.69827 1.57445 0.98213 1.36683 0.85069 0.76979 0.77837 0.79871 1.19047 1.21856 1.22178 1.21356 0.98145 1.00030 0.94416 1.21786 1.01089 0.97534 0.95041 0.91393 0.93163 0.92192 0.93731 0.92009 0.89769 0.89800 0.74717 0.74967 0.89067 0.89640 0.91878 0.90000 0.96897 0.95965 0.79384 0.94059 0.93173 0.94315 0.91089 0.93881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.69 9.91 71.98 0.71 -1.98 16 2 C -0.10 -2.20 5.92 30.60 0.18 -2.02 16 3 C -0.04 -0.93 5.25 29.85 0.16 -0.77 16 4 C 0.12 2.58 6.52 43.52 0.28 2.86 16 5 N -0.33 -6.12 12.63 -46.67 -0.59 -6.71 16 6 N -0.45 -4.24 7.29 -56.32 -0.41 -4.65 16 7 H 0.46 0.75 8.96 -213.42 -1.91 -1.16 16 8 C 0.14 1.14 11.52 84.28 0.97 2.11 16 9 C -0.32 -5.85 6.13 -20.15 -0.12 -5.97 16 10 C 0.59 13.41 7.78 86.66 0.67 14.08 16 11 O -0.58 -18.35 14.58 -4.03 -0.06 -18.40 16 12 N -0.71 -11.71 5.07 -445.80 -2.26 -13.97 16 13 C 0.16 3.29 2.46 44.99 0.11 3.40 16 14 H 0.07 1.76 7.58 -2.39 -0.02 1.74 16 15 C -0.11 -1.76 5.39 30.59 0.16 -1.59 16 16 C -0.10 -2.23 5.20 30.60 0.16 -2.07 16 17 C -0.08 -2.55 2.23 -10.79 -0.02 -2.57 16 18 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 19 C 0.15 6.17 5.65 86.38 0.49 6.66 16 20 N -0.74 -38.88 5.33 -343.45 -1.83 -40.71 16 21 C -0.24 -13.95 9.99 84.03 0.84 -13.11 16 22 H 0.07 4.09 7.83 -2.91 -0.02 4.07 16 23 C -0.08 -4.64 5.50 84.86 0.47 -4.17 16 24 N -0.97 -60.72 13.06 21.65 0.28 -60.43 16 25 Si 0.97 47.14 29.55 68.60 2.03 49.17 16 26 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 27 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 28 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 29 C -0.10 -3.34 5.07 30.58 0.16 -3.18 16 30 C -0.12 -3.11 5.49 30.58 0.17 -2.94 16 31 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.08 2.10 6.56 -2.39 -0.02 2.08 16 38 H 0.24 -0.69 7.46 -2.91 -0.02 -0.71 16 39 H 0.41 3.28 7.53 -92.71 -0.70 2.58 16 40 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 45 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 46 H 0.37 20.70 6.85 -92.71 -0.64 20.06 16 47 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 48 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 49 H 0.04 1.55 7.18 -2.39 -0.02 1.53 16 50 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 51 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -80.67 407.36 0.24 -80.42 By element: Atomic # 1 Polarization: 28.85 SS G_CDS: -2.30 Total: 26.55 kcal Atomic # 6 Polarization: -16.65 SS G_CDS: 5.38 Total: -11.26 kcal Atomic # 7 Polarization: -121.66 SS G_CDS: -4.81 Total: -126.47 kcal Atomic # 8 Polarization: -18.35 SS G_CDS: -0.06 Total: -18.40 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 2.03 Total: 49.17 kcal Total: -80.67 0.24 -80.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570041542.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.752 kcal (2) G-P(sol) polarization free energy of solvation -80.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds