Wall clock time and date at job start Tue Mar 31 2020 20:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53009 * 109.46883 * 2 1 4 4 C 1.50700 * 109.46947 * 119.99435 * 2 1 3 5 5 N 1.30501 * 125.65544 * 300.17797 * 4 2 1 6 6 C 1.34128 * 109.25886 * 180.29261 * 5 4 2 7 7 C 1.34669 * 108.01919 * 359.72550 * 6 5 4 8 8 N 1.35050 * 125.64911 * 120.00499 * 4 2 1 9 9 C 1.46497 * 126.39569 * 359.97438 * 8 4 2 10 10 C 1.50703 * 109.47156 * 84.71324 * 9 8 4 11 11 O 1.21276 * 119.99836 * 0.02562 * 10 9 8 12 12 N 1.34773 * 119.99775 * 179.97438 * 10 9 8 13 13 C 1.46500 * 119.99760 * 180.02562 * 12 10 9 14 14 H 1.09001 * 110.67461 * 328.23097 * 13 12 10 15 15 C 1.54961 * 110.92632 * 91.53985 * 13 12 10 16 16 C 1.54270 * 104.16191 * 156.29508 * 15 13 12 17 17 C 1.53869 * 106.63967 * 336.44607 * 16 15 13 18 18 H 1.09003 * 110.03849 * 119.30531 * 17 16 15 19 19 C 1.52998 * 110.03587 * 240.69205 * 17 16 15 20 20 N 1.46506 * 109.46662 * 293.54771 * 19 17 16 21 21 C 1.36946 * 119.99531 * 179.97438 * 20 19 17 22 22 H 1.07997 * 120.00340 * 359.97438 * 21 20 19 23 23 C 1.38814 * 119.99360 * 180.02562 * 21 20 19 24 24 N 1.31619 * 120.00346 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99681 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47553 * 89.99311 * 25 23 21 27 27 H 1.48501 * 109.47245 * 209.99912 * 25 23 21 28 28 H 1.48506 * 109.47035 * 329.99723 * 25 23 21 29 29 C 1.54268 * 106.60115 * 359.97438 * 17 16 15 30 30 H 1.08998 * 109.47285 * 60.00429 * 1 2 3 31 31 H 1.09009 * 109.46841 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47438 * 299.99851 * 1 2 3 33 33 H 1.08995 * 109.47688 * 239.99410 * 2 1 3 34 34 H 1.09000 * 109.46568 * 179.97438 * 3 2 1 35 35 H 1.08993 * 109.46611 * 299.99443 * 3 2 1 36 36 H 1.08996 * 109.46962 * 59.99857 * 3 2 1 37 37 H 1.08000 * 125.98894 * 179.73062 * 6 5 4 38 38 H 1.07995 * 126.58847 * 180.02562 * 7 6 5 39 39 H 1.09000 * 109.47072 * 324.71351 * 9 8 4 40 40 H 1.09001 * 109.47336 * 204.71723 * 9 8 4 41 41 H 0.96997 * 120.00419 * 0.02562 * 12 10 9 42 42 H 1.08997 * 110.47708 * 37.64106 * 15 13 12 43 43 H 1.09002 * 110.53308 * 274.97498 * 15 13 12 44 44 H 1.09002 * 110.03399 * 217.13605 * 16 15 13 45 45 H 1.08995 * 110.02943 * 95.75505 * 16 15 13 46 46 H 1.09001 * 109.47351 * 53.54268 * 19 17 16 47 47 H 1.08996 * 109.47703 * 173.54745 * 19 17 16 48 48 H 0.96991 * 120.00127 * 359.97438 * 20 19 17 49 49 H 0.96995 * 119.99835 * 180.02562 * 24 23 21 50 50 H 1.08997 * 110.48788 * 142.28685 * 29 17 16 51 51 H 1.09001 * 110.48482 * 264.93365 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7103 1.2305 5 7 1.7832 -0.3638 2.4638 6 6 2.3968 -1.2182 3.2959 7 6 3.0459 -2.1325 2.5500 8 7 2.8120 -1.8129 1.2397 9 6 3.3181 -2.5295 0.0665 10 6 4.5862 -1.8727 -0.4149 11 8 5.0243 -0.9020 0.1654 12 7 5.2340 -2.3647 -1.4894 13 6 6.4670 -1.7266 -1.9570 14 1 6.4435 -0.6545 -1.7616 15 6 7.7104 -2.3766 -1.2992 16 6 8.8601 -2.0715 -2.2816 17 6 8.2129 -1.8349 -3.6574 18 1 8.4351 -0.8264 -4.0062 19 6 8.7314 -2.8634 -4.6644 20 7 10.1587 -2.6357 -4.9039 21 6 10.8437 -3.4404 -5.7749 22 1 10.3319 -4.2431 -6.2848 23 6 12.1962 -3.2250 -6.0014 24 7 12.8200 -2.2470 -5.3795 25 14 13.1304 -4.3222 -7.1899 26 1 13.0633 -3.7428 -8.5556 27 1 14.5493 -4.4196 -6.7627 28 1 12.5213 -5.6765 -7.1964 29 6 6.6918 -2.0051 -3.4640 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0278 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8934 -0.5139 -0.8899 34 1 3.1299 1.4425 0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6766 1.9564 0.8899 37 1 2.3742 -1.1798 4.3750 38 1 3.6371 -2.9591 2.9154 39 1 2.5709 -2.5015 -0.7266 40 1 3.5247 -3.5656 0.3347 41 1 4.8838 -3.1413 -1.9533 42 1 7.5699 -3.4528 -1.1988 43 1 7.9090 -1.9247 -0.3274 44 1 9.5436 -2.9191 -2.3313 45 1 9.3964 -1.1778 -1.9626 46 1 8.5855 -3.8675 -4.2660 47 1 8.1849 -2.7616 -5.6019 48 1 10.6184 -1.9150 -4.4456 49 1 13.7649 -2.0963 -5.5381 50 1 6.1469 -1.2821 -4.0710 51 1 6.3869 -3.0213 -3.7139 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571544605.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:17 Heat of formation + Delta-G solvation = 18.514522 kcal Electronic energy + Delta-G solvation = -28603.880029 eV Core-core repulsion = 24731.780901 eV Total energy + Delta-G solvation = -3872.099128 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.45340 -40.12373 -38.19287 -35.63676 -34.98144 -34.30377 -33.52410 -31.15962 -29.24234 -28.84379 -28.70226 -27.41457 -27.04761 -24.40193 -23.14865 -22.26928 -21.89056 -21.20996 -20.80972 -19.40681 -19.20707 -17.84792 -17.63973 -17.09013 -16.20466 -15.95449 -15.57257 -15.24895 -14.98240 -14.61088 -14.56352 -14.09706 -13.89373 -13.66357 -13.49118 -13.45943 -13.23796 -13.14312 -12.87056 -12.81545 -12.40139 -12.13171 -11.89987 -11.79148 -11.60210 -11.47029 -11.26333 -11.16135 -10.89605 -10.86675 -10.61504 -10.58634 -10.42458 -10.16332 -10.14838 -9.93695 -9.73010 -9.68110 -9.28586 -8.89236 -8.54728 -6.93871 -5.78504 -3.07214 1.70091 2.14335 2.29382 2.90026 2.99584 3.41318 3.46239 3.48167 4.05433 4.14645 4.19126 4.34344 4.46369 4.54400 4.63194 4.73539 4.75615 4.83399 4.94434 4.95352 5.24222 5.37845 5.40713 5.41568 5.49515 5.52231 5.53964 5.55124 5.60287 5.61300 5.67354 5.76044 5.81940 5.91150 6.00577 6.03762 6.06809 6.08991 6.21435 6.25298 6.33488 6.48009 6.55474 6.62263 6.77599 6.85758 6.88938 7.12235 7.67223 7.79643 7.91541 8.40541 9.51610 10.10223 10.44709 11.44322 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.028647 B = 0.001839 C = 0.001803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.191346 B =15218.148482 C =15526.317967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.007 4.007 3 C -0.140 4.140 4 C 0.228 3.772 5 N -0.486 5.486 6 C -0.026 4.026 7 C -0.052 4.052 8 N -0.442 5.442 9 C 0.082 3.918 10 C 0.493 3.507 11 O -0.516 6.516 12 N -0.716 5.716 13 C 0.138 3.862 14 H 0.096 0.904 15 C -0.131 4.131 16 C -0.115 4.115 17 C -0.096 4.096 18 H 0.075 0.925 19 C 0.161 3.839 20 N -0.732 5.732 21 C -0.240 4.240 22 H 0.069 0.931 23 C -0.015 4.015 24 N -0.933 5.933 25 Si 0.907 3.093 26 H -0.290 1.290 27 H -0.291 1.291 28 H -0.282 1.282 29 C -0.120 4.120 30 H 0.063 0.937 31 H 0.052 0.948 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.059 0.941 35 H 0.061 0.939 36 H 0.067 0.933 37 H 0.169 0.831 38 H 0.172 0.828 39 H 0.120 0.880 40 H 0.123 0.877 41 H 0.401 0.599 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.079 0.921 45 H 0.062 0.938 46 H 0.018 0.982 47 H 0.016 0.984 48 H 0.384 0.616 49 H 0.255 0.745 50 H 0.070 0.930 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.883 -0.351 12.414 28.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.027 4.027 3 C -0.198 4.198 4 C -0.034 4.034 5 N -0.204 5.204 6 C -0.174 4.174 7 C -0.184 4.184 8 N -0.125 5.125 9 C -0.045 4.045 10 C 0.277 3.723 11 O -0.391 6.391 12 N -0.368 5.368 13 C 0.034 3.966 14 H 0.115 0.885 15 C -0.170 4.170 16 C -0.153 4.153 17 C -0.115 4.115 18 H 0.093 0.907 19 C 0.033 3.967 20 N -0.377 5.377 21 C -0.371 4.371 22 H 0.087 0.913 23 C -0.211 4.211 24 N -0.581 5.581 25 Si 0.738 3.262 26 H -0.217 1.217 27 H -0.218 1.218 28 H -0.208 1.208 29 C -0.158 4.158 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.186 0.814 38 H 0.189 0.811 39 H 0.138 0.862 40 H 0.141 0.859 41 H 0.236 0.764 42 H 0.084 0.916 43 H 0.083 0.917 44 H 0.098 0.902 45 H 0.081 0.919 46 H 0.036 0.964 47 H 0.034 0.966 48 H 0.218 0.782 49 H 0.065 0.935 50 H 0.088 0.912 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -25.940 0.813 12.882 28.974 hybrid contribution 1.356 -1.665 -0.929 2.340 sum -24.583 -0.852 11.953 27.348 Atomic orbital electron populations 1.21794 0.93049 1.02024 1.02888 1.19533 0.96436 0.96182 0.90593 1.21763 1.01740 0.93774 1.02485 1.23172 0.96390 0.88177 0.95696 1.70177 1.24485 1.26832 0.98929 1.22230 1.01173 0.94428 0.99539 1.22628 1.08019 1.05226 0.82532 1.44837 1.38508 1.23364 1.05795 1.21691 0.96000 0.97637 0.89161 1.20683 0.85605 0.84925 0.81112 1.90806 1.66897 1.25985 1.55374 1.45982 1.26709 1.33489 1.30581 1.22150 0.82241 0.98135 0.94061 0.88547 1.22734 0.94695 1.00482 0.99039 1.22126 0.97100 1.02786 0.93334 1.21870 0.92566 1.00896 0.96160 0.90684 1.20727 0.86760 0.94724 0.94448 1.42371 1.03977 1.38632 1.52675 1.19222 0.91629 1.09172 1.17108 0.91265 1.24751 0.96800 0.98914 1.00599 1.69658 1.09928 1.32572 1.45978 0.86193 0.79329 0.79929 0.80742 1.21734 1.21768 1.20809 1.22610 0.97340 1.02127 0.93747 0.91781 0.92866 0.91242 0.90694 0.92155 0.91956 0.91425 0.81372 0.81063 0.86174 0.85883 0.76441 0.91578 0.91737 0.90190 0.91869 0.96401 0.96571 0.78198 0.93501 0.91164 0.90861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 9.17 37.16 0.34 -0.64 16 2 C -0.01 -0.06 3.25 -91.77 -0.30 -0.36 16 3 C -0.14 -1.29 9.18 37.16 0.34 -0.95 16 4 C 0.23 2.50 6.39 -155.41 -0.99 1.50 16 5 N -0.49 -6.15 11.25 -10.81 -0.12 -6.28 16 6 C -0.03 -0.29 11.87 -17.81 -0.21 -0.50 16 7 C -0.05 -0.50 11.58 -16.56 -0.19 -0.69 16 8 N -0.44 -4.20 2.24 -115.19 -0.26 -4.46 16 9 C 0.08 0.50 6.16 -5.19 -0.03 0.47 16 10 C 0.49 4.64 7.90 -10.99 -0.09 4.55 16 11 O -0.52 -7.42 16.06 5.56 0.09 -7.33 16 12 N -0.72 -5.66 5.19 -51.84 -0.27 -5.93 16 13 C 0.14 1.49 3.26 -65.89 -0.21 1.27 16 14 H 0.10 1.22 7.55 -51.93 -0.39 0.83 16 15 C -0.13 -1.60 6.53 -25.03 -0.16 -1.77 16 16 C -0.12 -1.72 6.13 -25.61 -0.16 -1.88 16 17 C -0.10 -1.43 2.98 -89.50 -0.27 -1.70 16 18 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 19 C 0.16 3.07 5.29 -4.04 -0.02 3.05 16 20 N -0.73 -18.16 5.34 -59.91 -0.32 -18.48 16 21 C -0.24 -6.65 9.99 -15.05 -0.15 -6.80 16 22 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 23 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 24 N -0.93 -28.10 13.06 55.49 0.72 -27.37 16 25 Si 0.91 22.24 29.55 -169.99 -5.02 17.22 16 26 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 27 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 28 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 29 C -0.12 -1.31 5.99 -25.07 -0.15 -1.46 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.05 0.35 8.14 -51.92 -0.42 -0.07 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.54 6.85 -51.93 -0.36 0.18 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.17 1.41 8.06 -52.49 -0.42 0.99 16 38 H 0.17 1.14 8.06 -52.49 -0.42 0.71 16 39 H 0.12 0.41 7.30 -51.93 -0.38 0.03 16 40 H 0.12 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.40 1.91 8.57 -40.82 -0.35 1.56 16 42 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.08 1.38 7.58 -51.93 -0.39 0.99 16 45 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 46 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 47 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 48 H 0.38 10.06 7.50 -40.82 -0.31 9.76 16 49 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 50 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 51 H 0.07 0.72 7.73 -51.93 -0.40 0.32 16 LS Contribution 414.50 15.07 6.25 6.25 Total: -1.00 -35.80 414.50 -10.17 -45.97 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: -8.89 Total: 6.82 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: -2.35 Total: -6.41 kcal Atomic # 7 Polarization: -62.27 SS G_CDS: -0.24 Total: -62.52 kcal Atomic # 8 Polarization: -7.42 SS G_CDS: 0.09 Total: -7.33 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -35.80 -10.17 -45.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571544605.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.483 kcal (2) G-P(sol) polarization free energy of solvation -35.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds