Wall clock time and date at job start Tue Mar 31 2020 20:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53009 * 109.46883 * 2 1 4 4 C 1.50700 * 109.46947 * 119.99435 * 2 1 3 5 5 N 1.30501 * 125.65544 * 300.17797 * 4 2 1 6 6 C 1.34128 * 109.25886 * 180.29261 * 5 4 2 7 7 C 1.34669 * 108.01919 * 359.72550 * 6 5 4 8 8 N 1.35050 * 125.64911 * 120.00499 * 4 2 1 9 9 C 1.46497 * 126.39569 * 359.97438 * 8 4 2 10 10 C 1.50703 * 109.47156 * 84.71324 * 9 8 4 11 11 O 1.21276 * 119.99836 * 0.02562 * 10 9 8 12 12 N 1.34773 * 119.99775 * 179.97438 * 10 9 8 13 13 C 1.46500 * 119.99760 * 180.02562 * 12 10 9 14 14 H 1.09001 * 110.67461 * 328.23097 * 13 12 10 15 15 C 1.54961 * 110.92632 * 91.53985 * 13 12 10 16 16 C 1.54270 * 104.16191 * 156.29508 * 15 13 12 17 17 C 1.53869 * 106.63967 * 336.44607 * 16 15 13 18 18 H 1.09003 * 110.03849 * 119.30531 * 17 16 15 19 19 C 1.52998 * 110.03587 * 240.69205 * 17 16 15 20 20 N 1.46506 * 109.46662 * 293.54771 * 19 17 16 21 21 C 1.36946 * 119.99531 * 179.97438 * 20 19 17 22 22 H 1.07997 * 120.00340 * 359.97438 * 21 20 19 23 23 C 1.38814 * 119.99360 * 180.02562 * 21 20 19 24 24 N 1.31619 * 120.00346 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99681 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47553 * 89.99311 * 25 23 21 27 27 H 1.48501 * 109.47245 * 209.99912 * 25 23 21 28 28 H 1.48506 * 109.47035 * 329.99723 * 25 23 21 29 29 C 1.54268 * 106.60115 * 359.97438 * 17 16 15 30 30 H 1.08998 * 109.47285 * 60.00429 * 1 2 3 31 31 H 1.09009 * 109.46841 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47438 * 299.99851 * 1 2 3 33 33 H 1.08995 * 109.47688 * 239.99410 * 2 1 3 34 34 H 1.09000 * 109.46568 * 179.97438 * 3 2 1 35 35 H 1.08993 * 109.46611 * 299.99443 * 3 2 1 36 36 H 1.08996 * 109.46962 * 59.99857 * 3 2 1 37 37 H 1.08000 * 125.98894 * 179.73062 * 6 5 4 38 38 H 1.07995 * 126.58847 * 180.02562 * 7 6 5 39 39 H 1.09000 * 109.47072 * 324.71351 * 9 8 4 40 40 H 1.09001 * 109.47336 * 204.71723 * 9 8 4 41 41 H 0.96997 * 120.00419 * 0.02562 * 12 10 9 42 42 H 1.08997 * 110.47708 * 37.64106 * 15 13 12 43 43 H 1.09002 * 110.53308 * 274.97498 * 15 13 12 44 44 H 1.09002 * 110.03399 * 217.13605 * 16 15 13 45 45 H 1.08995 * 110.02943 * 95.75505 * 16 15 13 46 46 H 1.09001 * 109.47351 * 53.54268 * 19 17 16 47 47 H 1.08996 * 109.47703 * 173.54745 * 19 17 16 48 48 H 0.96991 * 120.00127 * 359.97438 * 20 19 17 49 49 H 0.96995 * 119.99835 * 180.02562 * 24 23 21 50 50 H 1.08997 * 110.48788 * 142.28685 * 29 17 16 51 51 H 1.09001 * 110.48482 * 264.93365 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7103 1.2305 5 7 1.7832 -0.3638 2.4638 6 6 2.3968 -1.2182 3.2959 7 6 3.0459 -2.1325 2.5500 8 7 2.8120 -1.8129 1.2397 9 6 3.3181 -2.5295 0.0665 10 6 4.5862 -1.8727 -0.4149 11 8 5.0243 -0.9020 0.1654 12 7 5.2340 -2.3647 -1.4894 13 6 6.4670 -1.7266 -1.9570 14 1 6.4435 -0.6545 -1.7616 15 6 7.7104 -2.3766 -1.2992 16 6 8.8601 -2.0715 -2.2816 17 6 8.2129 -1.8349 -3.6574 18 1 8.4351 -0.8264 -4.0062 19 6 8.7314 -2.8634 -4.6644 20 7 10.1587 -2.6357 -4.9039 21 6 10.8437 -3.4404 -5.7749 22 1 10.3319 -4.2431 -6.2848 23 6 12.1962 -3.2250 -6.0014 24 7 12.8200 -2.2470 -5.3795 25 14 13.1304 -4.3222 -7.1899 26 1 13.0633 -3.7428 -8.5556 27 1 14.5493 -4.4196 -6.7627 28 1 12.5213 -5.6765 -7.1964 29 6 6.6918 -2.0051 -3.4640 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0278 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8934 -0.5139 -0.8899 34 1 3.1299 1.4425 0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6766 1.9564 0.8899 37 1 2.3742 -1.1798 4.3750 38 1 3.6371 -2.9591 2.9154 39 1 2.5709 -2.5015 -0.7266 40 1 3.5247 -3.5656 0.3347 41 1 4.8838 -3.1413 -1.9533 42 1 7.5699 -3.4528 -1.1988 43 1 7.9090 -1.9247 -0.3274 44 1 9.5436 -2.9191 -2.3313 45 1 9.3964 -1.1778 -1.9626 46 1 8.5855 -3.8675 -4.2660 47 1 8.1849 -2.7616 -5.6019 48 1 10.6184 -1.9150 -4.4456 49 1 13.7649 -2.0963 -5.5381 50 1 6.1469 -1.2821 -4.0710 51 1 6.3869 -3.0213 -3.7139 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571544605.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:15 Heat of formation + Delta-G solvation = -4.746137 kcal Electronic energy + Delta-G solvation = -28604.888687 eV Core-core repulsion = 24731.780901 eV Total energy + Delta-G solvation = -3873.107785 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.14768 -40.95981 -39.28252 -36.47560 -36.27553 -35.03594 -34.80647 -32.93557 -30.21212 -29.96927 -29.55370 -28.04872 -28.03116 -26.08366 -23.98297 -23.82916 -22.67140 -21.93434 -21.70741 -20.51753 -20.05853 -19.11762 -18.52477 -18.30150 -17.19524 -16.77233 -16.59345 -16.43549 -16.01025 -15.69301 -15.35620 -15.20899 -15.13244 -14.75479 -14.59849 -14.43661 -14.31381 -14.22276 -13.81035 -13.48107 -13.34608 -13.27305 -13.01556 -12.91923 -12.80433 -12.52488 -12.40452 -12.16810 -12.12855 -12.10459 -11.90030 -11.85226 -11.73952 -11.53283 -11.42783 -11.29524 -10.91453 -10.91125 -10.45757 -10.11068 -9.26887 -8.98010 -7.94685 -5.23112 0.99261 1.45937 1.47137 1.48919 1.57249 1.69609 2.19954 2.24753 2.56526 3.39006 3.41774 3.51206 3.58269 3.69157 3.75175 3.80416 3.88377 4.09090 4.13675 4.20278 4.20500 4.34772 4.35583 4.45455 4.50076 4.59035 4.60216 4.67722 4.73826 4.77940 4.79262 4.90109 4.91608 4.95460 5.00330 5.05489 5.12314 5.15131 5.24383 5.27289 5.32906 5.40529 5.42278 5.46446 5.51931 5.56719 5.86452 6.18705 6.27879 6.50384 7.16067 7.18615 7.33864 8.12235 8.33723 9.29039 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.028647 B = 0.001839 C = 0.001803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.191346 B =15218.148482 C =15526.317967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.008 4.008 3 C -0.134 4.134 4 C 0.214 3.786 5 N -0.525 5.525 6 C -0.058 4.058 7 C -0.050 4.050 8 N -0.445 5.445 9 C 0.083 3.917 10 C 0.495 3.505 11 O -0.572 6.572 12 N -0.699 5.699 13 C 0.150 3.850 14 H 0.076 0.924 15 C -0.121 4.121 16 C -0.113 4.113 17 C -0.090 4.090 18 H 0.061 0.939 19 C 0.160 3.840 20 N -0.747 5.747 21 C -0.243 4.243 22 H 0.078 0.922 23 C -0.080 4.080 24 N -0.971 5.971 25 Si 0.974 3.026 26 H -0.287 1.287 27 H -0.297 1.297 28 H -0.267 1.267 29 C -0.104 4.104 30 H 0.083 0.917 31 H 0.060 0.940 32 H 0.050 0.950 33 H 0.095 0.905 34 H 0.032 0.968 35 H 0.083 0.917 36 H 0.051 0.949 37 H 0.180 0.820 38 H 0.200 0.800 39 H 0.155 0.845 40 H 0.161 0.839 41 H 0.422 0.578 42 H 0.080 0.920 43 H 0.053 0.947 44 H 0.052 0.948 45 H 0.049 0.951 46 H 0.025 0.975 47 H 0.022 0.978 48 H 0.373 0.627 49 H 0.250 0.750 50 H 0.085 0.915 51 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.122 -2.690 11.163 30.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.029 4.029 3 C -0.192 4.192 4 C -0.049 4.049 5 N -0.244 5.244 6 C -0.204 4.204 7 C -0.182 4.182 8 N -0.127 5.127 9 C -0.043 4.043 10 C 0.280 3.720 11 O -0.450 6.450 12 N -0.351 5.351 13 C 0.044 3.956 14 H 0.095 0.905 15 C -0.160 4.160 16 C -0.152 4.152 17 C -0.110 4.110 18 H 0.080 0.920 19 C 0.034 3.966 20 N -0.390 5.390 21 C -0.374 4.374 22 H 0.096 0.904 23 C -0.272 4.272 24 N -0.622 5.622 25 Si 0.803 3.197 26 H -0.215 1.215 27 H -0.224 1.224 28 H -0.192 1.192 29 C -0.143 4.143 30 H 0.102 0.898 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.113 0.887 34 H 0.052 0.948 35 H 0.102 0.898 36 H 0.070 0.930 37 H 0.197 0.803 38 H 0.217 0.783 39 H 0.173 0.827 40 H 0.179 0.821 41 H 0.260 0.740 42 H 0.098 0.902 43 H 0.072 0.928 44 H 0.071 0.929 45 H 0.068 0.932 46 H 0.043 0.957 47 H 0.040 0.960 48 H 0.204 0.796 49 H 0.059 0.941 50 H 0.103 0.897 51 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -28.244 -1.588 11.600 30.574 hybrid contribution 2.040 -0.928 -0.507 2.297 sum -26.204 -2.516 11.094 28.566 Atomic orbital electron populations 1.21736 0.91844 1.02526 1.02923 1.19665 0.97379 0.95332 0.90480 1.21703 0.99870 0.94896 1.02771 1.23577 0.96674 0.88802 0.95856 1.70116 1.25936 1.28114 1.00222 1.22619 1.02202 0.95140 1.00433 1.23097 1.07160 1.05299 0.82631 1.45033 1.37923 1.23124 1.06662 1.22037 0.94816 0.98413 0.89023 1.21265 0.86212 0.84054 0.80467 1.90806 1.68518 1.28559 1.57114 1.45735 1.25384 1.33740 1.30278 1.21776 0.82880 0.97161 0.93767 0.90538 1.22631 0.94303 1.01336 0.97705 1.22027 0.97658 1.01024 0.94457 1.21769 0.95607 0.98852 0.94744 0.92027 1.20922 0.83832 0.96185 0.95703 1.42628 1.06266 1.37925 1.52131 1.19665 0.92041 1.09073 1.16668 0.90439 1.25599 0.97994 1.00698 1.02904 1.69824 1.09800 1.34622 1.47989 0.85131 0.77446 0.78758 0.78375 1.21462 1.22427 1.19209 1.22495 0.93895 1.03978 0.93893 0.89835 0.92103 0.93072 0.88727 0.94832 0.89796 0.92988 0.80330 0.78325 0.82713 0.82131 0.73987 0.90176 0.92848 0.92871 0.93203 0.95696 0.96001 0.79583 0.94113 0.89653 0.88610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.63 9.17 71.98 0.66 -0.97 16 2 C -0.01 -0.13 3.25 -11.54 -0.04 -0.17 16 3 C -0.13 -2.47 9.18 71.99 0.66 -1.81 16 4 C 0.21 4.49 6.39 138.13 0.88 5.37 16 5 N -0.52 -13.48 11.25 -188.13 -2.12 -15.59 16 6 C -0.06 -1.25 11.87 83.52 0.99 -0.26 16 7 C -0.05 -0.87 11.58 83.09 0.96 0.09 16 8 N -0.45 -7.49 2.24 -518.34 -1.16 -8.66 16 9 C 0.08 0.68 6.16 85.63 0.53 1.21 16 10 C 0.49 7.93 7.90 87.66 0.69 8.62 16 11 O -0.57 -15.97 16.06 -3.02 -0.05 -16.01 16 12 N -0.70 -8.54 5.19 -436.31 -2.26 -10.81 16 13 C 0.15 2.90 3.26 46.31 0.15 3.05 16 14 H 0.08 1.87 7.55 -2.39 -0.02 1.85 16 15 C -0.12 -2.82 6.53 31.70 0.21 -2.61 16 16 C -0.11 -3.41 6.13 31.32 0.19 -3.22 16 17 C -0.09 -2.63 2.98 -10.07 -0.03 -2.66 16 18 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 19 C 0.16 5.91 5.29 86.38 0.46 6.37 16 20 N -0.75 -37.27 5.34 -343.44 -1.83 -39.11 16 21 C -0.24 -13.37 9.99 84.03 0.84 -12.53 16 22 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 23 C -0.08 -4.58 5.50 84.86 0.47 -4.12 16 24 N -0.97 -59.72 13.06 21.65 0.28 -59.43 16 25 Si 0.97 45.78 29.55 68.60 2.03 47.80 16 26 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 27 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 28 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 29 C -0.10 -1.97 5.99 31.67 0.19 -1.78 16 30 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 32 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.09 1.07 6.85 -2.39 -0.02 1.06 16 34 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.18 3.09 8.06 -2.91 -0.02 3.07 16 38 H 0.20 2.11 8.06 -2.91 -0.02 2.09 16 39 H 0.16 0.23 7.30 -2.39 -0.02 0.22 16 40 H 0.16 0.16 8.14 -2.39 -0.02 0.14 16 41 H 0.42 1.85 8.57 -92.71 -0.79 1.06 16 42 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.05 1.88 7.58 -2.39 -0.02 1.86 16 45 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 46 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 47 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 48 H 0.37 20.06 7.50 -92.72 -0.70 19.37 16 49 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 50 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 51 H 0.10 1.44 7.73 -2.39 -0.02 1.42 16 Total: -1.00 -81.47 414.50 2.13 -79.35 By element: Atomic # 1 Polarization: 28.46 SS G_CDS: -0.57 Total: 27.89 kcal Atomic # 6 Polarization: -13.24 SS G_CDS: 7.81 Total: -5.42 kcal Atomic # 7 Polarization: -126.50 SS G_CDS: -7.09 Total: -133.60 kcal Atomic # 8 Polarization: -15.97 SS G_CDS: -0.05 Total: -16.01 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.80 kcal Total: -81.47 2.13 -79.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571544605.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.602 kcal (2) G-P(sol) polarization free energy of solvation -81.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds