Wall clock time and date at job start Tue Mar 31 2020 20:10:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47575 * 2 1 4 4 C 1.50702 * 109.46700 * 119.99928 * 2 1 3 5 5 N 1.30507 * 125.65284 * 300.17353 * 4 2 1 6 6 C 1.34125 * 109.25593 * 180.29289 * 5 4 2 7 7 C 1.34665 * 108.02396 * 359.72519 * 6 5 4 8 8 N 1.35045 * 125.65465 * 120.00071 * 4 2 1 9 9 C 1.46510 * 126.39176 * 359.97260 * 8 4 2 10 10 C 1.50700 * 109.46795 * 84.71781 * 9 8 4 11 11 O 1.21279 * 120.00322 * 359.97438 * 10 9 8 12 12 N 1.34776 * 119.99786 * 179.97438 * 10 9 8 13 13 C 1.46496 * 120.00315 * 179.97438 * 12 10 9 14 14 H 1.09009 * 110.05276 * 33.58758 * 13 12 10 15 15 C 1.54266 * 110.03370 * 272.17546 * 13 12 10 16 16 C 1.54899 * 104.19319 * 217.09962 * 15 13 12 17 17 C 1.54891 * 102.74611 * 37.94376 * 16 15 13 18 18 H 1.08995 * 110.49176 * 80.73636 * 17 16 15 19 19 C 1.53002 * 110.59714 * 203.32616 * 17 16 15 20 20 N 1.46507 * 109.46733 * 289.83382 * 19 17 16 21 21 C 1.36938 * 119.99822 * 179.97438 * 20 19 17 22 22 H 1.08000 * 120.00001 * 0.02562 * 21 20 19 23 23 C 1.38809 * 119.99718 * 180.02562 * 21 20 19 24 24 N 1.31624 * 120.00346 * 359.97438 * 23 21 20 25 25 Si 1.86807 * 119.99949 * 180.02562 * 23 21 20 26 26 H 1.48505 * 109.46895 * 59.99748 * 25 23 21 27 27 H 1.48498 * 109.46805 * 179.97438 * 25 23 21 28 28 H 1.48493 * 109.46609 * 299.99623 * 25 23 21 29 29 C 1.53869 * 110.03544 * 155.00338 * 13 12 10 30 30 H 1.09005 * 109.46495 * 59.99949 * 1 2 3 31 31 H 1.08996 * 109.47226 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47224 * 300.00568 * 1 2 3 33 33 H 1.09000 * 109.47224 * 239.99432 * 2 1 3 34 34 H 1.09003 * 109.47056 * 179.97438 * 3 2 1 35 35 H 1.08993 * 109.46957 * 299.99401 * 3 2 1 36 36 H 1.09000 * 109.47309 * 59.99484 * 3 2 1 37 37 H 1.08005 * 125.98647 * 179.72415 * 6 5 4 38 38 H 1.08004 * 126.59089 * 180.02562 * 7 6 5 39 39 H 1.08994 * 109.47296 * 324.71929 * 9 8 4 40 40 H 1.09004 * 109.46816 * 204.71384 * 9 8 4 41 41 H 0.97000 * 119.99652 * 0.02562 * 12 10 9 42 42 H 1.08998 * 110.48811 * 98.42947 * 15 13 12 43 43 H 1.08993 * 110.60227 * 335.82974 * 15 13 12 44 44 H 1.08997 * 110.75810 * 279.62763 * 16 15 13 45 45 H 1.08996 * 110.91000 * 156.32706 * 16 15 13 46 46 H 1.08992 * 109.47317 * 49.83844 * 19 17 16 47 47 H 1.08997 * 109.47035 * 169.84399 * 19 17 16 48 48 H 0.96998 * 120.00095 * 0.02562 * 20 19 17 49 49 H 0.97001 * 120.00075 * 179.97438 * 24 23 21 50 50 H 1.09000 * 110.03397 * 0.02562 * 29 13 12 51 51 H 1.09001 * 110.03290 * 238.57843 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0322 -0.7104 1.2305 5 7 1.7832 -0.3639 2.4638 6 6 2.3967 -1.2184 3.2959 7 6 3.0457 -2.1327 2.5500 8 7 2.8118 -1.8131 1.2398 9 6 3.3179 -2.5297 0.0664 10 6 4.5861 -1.8730 -0.4148 11 8 5.0239 -0.9018 0.1649 12 7 5.2339 -2.3651 -1.4894 13 6 6.4664 -1.7265 -1.9576 14 1 7.0255 -1.3276 -1.1111 15 6 6.1309 -0.5941 -2.9500 16 6 7.2600 -0.6691 -4.0077 17 6 7.4860 -2.1939 -4.1588 18 1 6.7347 -2.6274 -4.8188 19 6 8.8922 -2.4796 -4.6899 20 7 8.9808 -2.0566 -6.0897 21 6 10.1530 -2.2143 -6.7798 22 1 11.0121 -2.6510 -6.2922 23 6 10.2371 -1.8130 -8.1059 24 7 9.1899 -1.2813 -8.7003 25 14 11.8359 -2.0289 -9.0476 26 1 12.1980 -3.4686 -9.0847 27 1 11.6654 -1.5258 -10.4343 28 1 12.9150 -1.2642 -8.3723 29 6 7.3280 -2.7436 -2.7261 30 1 -0.3632 0.5139 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8933 -0.5139 -0.8899 34 1 3.1301 1.4424 0.0005 35 1 1.6769 1.9562 -0.8900 36 1 1.6767 1.9564 0.8899 37 1 2.3741 -1.1800 4.3750 38 1 3.6368 -2.9595 2.9154 39 1 2.5708 -2.5016 -0.7267 40 1 3.5244 -3.5658 0.3347 41 1 4.8835 -3.1416 -1.9532 42 1 6.1445 0.3719 -2.4454 43 1 5.1604 -0.7669 -3.4152 44 1 8.1631 -0.1789 -3.6441 45 1 6.9380 -0.2308 -4.9523 46 1 9.6231 -1.9297 -4.0971 47 1 9.0970 -3.5479 -4.6196 48 1 8.2093 -1.6641 -6.5275 49 1 9.2488 -1.0006 -9.6270 50 1 6.8290 -3.7123 -2.7512 51 1 8.3052 -2.8384 -2.2526 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571544607.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:32 Heat of formation + Delta-G solvation = 19.577489 kcal Electronic energy + Delta-G solvation = -28695.869115 eV Core-core repulsion = 24823.816081 eV Total energy + Delta-G solvation = -3872.053034 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.44881 -40.16398 -38.15931 -35.61009 -34.96693 -34.29668 -33.49443 -31.17552 -29.24213 -28.87513 -28.70770 -27.38246 -27.04451 -24.41931 -23.13318 -22.22784 -21.86757 -21.20166 -20.49579 -19.76779 -19.33153 -17.86413 -17.61463 -17.06872 -16.34478 -15.90151 -15.31822 -15.02312 -14.96883 -14.54354 -14.51307 -14.20019 -13.88467 -13.83771 -13.63436 -13.49249 -13.12587 -13.11201 -12.89877 -12.81419 -12.36805 -12.28051 -11.91213 -11.76178 -11.44040 -11.39858 -11.23232 -11.15410 -10.88472 -10.80504 -10.64002 -10.57102 -10.35712 -10.29953 -10.14278 -10.01340 -9.72498 -9.66983 -9.30550 -8.88184 -8.54342 -6.93365 -5.78284 -3.06668 1.70743 2.15175 2.30006 2.91597 3.00322 3.42505 3.46897 3.47912 4.07329 4.15342 4.20924 4.36314 4.47284 4.54122 4.63147 4.70389 4.75704 4.86373 4.94340 4.97574 5.24677 5.41449 5.42126 5.42676 5.46431 5.52304 5.55582 5.56952 5.59019 5.63708 5.70537 5.79077 5.79595 5.93215 5.99689 6.04493 6.05769 6.11104 6.19803 6.23693 6.37877 6.49498 6.53675 6.55724 6.75213 6.86393 6.88596 7.12730 7.67633 7.80431 7.92189 8.40979 9.52016 10.10420 10.44998 11.44565 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.026320 B = 0.001905 C = 0.001830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.574839 B =14697.173955 C =15300.639724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.007 4.007 3 C -0.139 4.139 4 C 0.230 3.770 5 N -0.486 5.486 6 C -0.026 4.026 7 C -0.054 4.054 8 N -0.442 5.442 9 C 0.082 3.918 10 C 0.493 3.507 11 O -0.517 6.517 12 N -0.717 5.717 13 C 0.142 3.858 14 H 0.090 0.910 15 C -0.133 4.133 16 C -0.111 4.111 17 C -0.096 4.096 18 H 0.075 0.925 19 C 0.160 3.840 20 N -0.732 5.732 21 C -0.240 4.240 22 H 0.069 0.931 23 C -0.015 4.015 24 N -0.934 5.934 25 Si 0.907 3.093 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.286 1.286 29 C -0.122 4.122 30 H 0.064 0.936 31 H 0.052 0.948 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.059 0.941 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.169 0.831 38 H 0.172 0.828 39 H 0.121 0.879 40 H 0.123 0.877 41 H 0.401 0.599 42 H 0.066 0.934 43 H 0.067 0.933 44 H 0.070 0.930 45 H 0.073 0.927 46 H 0.019 0.981 47 H 0.017 0.983 48 H 0.384 0.616 49 H 0.255 0.745 50 H 0.068 0.932 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.814 -3.684 20.218 27.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.028 4.028 3 C -0.197 4.197 4 C -0.033 4.033 5 N -0.204 5.204 6 C -0.174 4.174 7 C -0.185 4.185 8 N -0.125 5.125 9 C -0.045 4.045 10 C 0.276 3.724 11 O -0.391 6.391 12 N -0.370 5.370 13 C 0.038 3.962 14 H 0.108 0.892 15 C -0.171 4.171 16 C -0.149 4.149 17 C -0.115 4.115 18 H 0.094 0.906 19 C 0.032 3.968 20 N -0.376 5.376 21 C -0.371 4.371 22 H 0.087 0.913 23 C -0.211 4.211 24 N -0.583 5.583 25 Si 0.738 3.262 26 H -0.213 1.213 27 H -0.217 1.217 28 H -0.213 1.213 29 C -0.161 4.161 30 H 0.083 0.917 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.186 0.814 38 H 0.189 0.811 39 H 0.139 0.861 40 H 0.141 0.859 41 H 0.236 0.764 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.088 0.912 45 H 0.092 0.908 46 H 0.037 0.963 47 H 0.034 0.966 48 H 0.217 0.783 49 H 0.065 0.935 50 H 0.087 0.913 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -17.736 -2.435 20.759 27.412 hybrid contribution 1.187 -1.292 -1.152 2.099 sum -16.549 -3.727 19.607 25.927 Atomic orbital electron populations 1.21795 0.93042 1.02018 1.02908 1.19538 0.96445 0.96208 0.90579 1.21759 1.01737 0.93752 1.02493 1.23187 0.96285 0.88122 0.95698 1.70184 1.24488 1.26844 0.98933 1.22227 1.01173 0.94444 0.99527 1.22613 1.08134 1.05240 0.82556 1.44842 1.38506 1.23358 1.05781 1.21699 0.96067 0.97580 0.89177 1.20686 0.85732 0.84967 0.80996 1.90800 1.66526 1.25795 1.56019 1.46211 1.26900 1.33468 1.30396 1.21772 0.83921 0.93350 0.97170 0.89182 1.22777 0.99590 0.98113 0.96640 1.22469 0.97731 0.96190 0.98512 1.22151 0.99238 0.95616 0.94528 0.90638 1.20692 0.92358 0.96608 0.87124 1.42335 1.13450 1.74718 1.07067 1.19188 0.90572 1.33923 0.93408 0.91308 1.24740 0.97527 1.01719 0.97065 1.69647 1.28787 1.47588 1.12271 0.86265 0.83105 0.77680 0.79123 1.21308 1.21685 1.21272 1.22437 0.99910 0.97579 0.96144 0.91741 0.92875 0.91254 0.90663 0.92153 0.91906 0.91464 0.81398 0.81100 0.86145 0.85936 0.76429 0.91514 0.91469 0.91163 0.90786 0.96277 0.96561 0.78278 0.93481 0.91339 0.90439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 9.18 37.16 0.34 -0.70 16 2 C -0.01 -0.07 3.25 -91.77 -0.30 -0.37 16 3 C -0.14 -1.35 9.18 37.16 0.34 -1.01 16 4 C 0.23 2.56 6.39 -155.41 -0.99 1.56 16 5 N -0.49 -6.20 11.25 -10.81 -0.12 -6.32 16 6 C -0.03 -0.29 11.87 -17.81 -0.21 -0.50 16 7 C -0.05 -0.51 11.58 -16.56 -0.19 -0.70 16 8 N -0.44 -4.22 2.24 -115.18 -0.26 -4.48 16 9 C 0.08 0.51 6.16 -5.19 -0.03 0.48 16 10 C 0.49 4.64 7.90 -10.99 -0.09 4.56 16 11 O -0.52 -7.38 16.07 5.56 0.09 -7.29 16 12 N -0.72 -5.71 5.04 -52.72 -0.27 -5.98 16 13 C 0.14 1.51 3.24 -66.82 -0.22 1.29 16 14 H 0.09 1.12 7.57 -51.92 -0.39 0.72 16 15 C -0.13 -1.58 6.53 -25.07 -0.16 -1.74 16 16 C -0.11 -1.60 6.20 -24.73 -0.15 -1.76 16 17 C -0.10 -1.40 2.88 -88.96 -0.26 -1.65 16 18 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 19 C 0.16 3.06 5.55 -4.04 -0.02 3.04 16 20 N -0.73 -18.09 5.50 -59.91 -0.33 -18.42 16 21 C -0.24 -6.65 9.99 -15.06 -0.15 -6.80 16 22 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 23 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 24 N -0.93 -27.98 13.06 55.49 0.72 -27.26 16 25 Si 0.91 22.27 29.55 -169.99 -5.02 17.25 16 26 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 27 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 28 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 29 C -0.12 -1.33 6.14 -25.62 -0.16 -1.49 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.08 0.59 6.85 -51.93 -0.36 0.23 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.17 1.39 8.06 -52.48 -0.42 0.97 16 38 H 0.17 1.09 8.06 -52.48 -0.42 0.67 16 39 H 0.12 0.46 7.30 -51.93 -0.38 0.08 16 40 H 0.12 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.40 2.01 8.32 -40.82 -0.34 1.67 16 42 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.07 0.75 8.05 -51.93 -0.42 0.33 16 44 H 0.07 1.08 7.97 -51.93 -0.41 0.67 16 45 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 46 H 0.02 0.38 8.02 -51.93 -0.42 -0.04 16 47 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 48 H 0.38 9.93 7.64 -40.82 -0.31 9.62 16 49 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 50 H 0.07 0.62 7.62 -51.93 -0.40 0.22 16 51 H 0.08 0.87 7.84 -51.93 -0.41 0.46 16 LS Contribution 414.56 15.07 6.25 6.25 Total: -1.00 -35.63 414.56 -10.16 -45.79 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -8.87 Total: 6.78 kcal Atomic # 6 Polarization: -3.96 SS G_CDS: -2.35 Total: -6.30 kcal Atomic # 7 Polarization: -62.21 SS G_CDS: -0.25 Total: -62.46 kcal Atomic # 8 Polarization: -7.38 SS G_CDS: 0.09 Total: -7.29 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -35.63 -10.16 -45.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571544607.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.366 kcal (2) G-P(sol) polarization free energy of solvation -35.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds