Wall clock time and date at job start Tue Mar 31 2020 20:13:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.46963 * 2 1 4 4 O 1.42897 * 109.47088 * 240.00202 * 2 1 3 5 5 C 1.50699 * 109.47284 * 120.00035 * 2 1 3 6 6 N 1.30300 * 126.34808 * 352.87779 * 5 2 1 7 7 N 1.28519 * 110.05377 * 180.31179 * 6 5 2 8 8 C 1.31213 * 109.86419 * 359.72087 * 7 6 5 9 9 N 1.38579 * 126.47802 * 179.97438 * 8 7 6 10 10 C 1.46848 * 111.00308 * 255.90494 * 9 8 7 11 11 C 1.53037 * 109.52032 * 185.83993 * 10 9 8 12 12 C 1.53121 * 109.27799 * 300.81278 * 11 10 9 13 13 C 1.53122 * 109.15483 * 57.66095 * 12 11 10 14 14 H 1.09004 * 109.50335 * 62.32896 * 13 12 11 15 15 C 1.50703 * 109.49926 * 182.40247 * 13 12 11 16 16 H 1.07997 * 120.00393 * 120.00275 * 15 13 12 17 17 C 1.37876 * 120.00069 * 299.99951 * 15 13 12 18 18 N 1.31517 * 120.00333 * 359.97438 * 17 15 13 19 19 Si 1.86807 * 120.00160 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.46938 * 89.99883 * 19 17 15 21 21 H 1.48493 * 109.46918 * 209.99928 * 19 17 15 22 22 H 1.48501 * 109.46867 * 330.00001 * 19 17 15 23 23 C 1.46845 * 110.99641 * 20.11423 * 9 8 7 24 24 N 1.36460 * 107.05136 * 359.97438 * 8 7 6 25 25 C 1.46499 * 127.13704 * 180.02562 * 24 8 7 26 26 C 1.52998 * 109.47184 * 89.16033 * 25 24 8 27 27 C 1.52994 * 117.50017 * 243.62182 * 26 25 24 28 28 C 1.52999 * 117.49850 * 174.99551 * 26 25 24 29 29 H 1.08998 * 109.47412 * 299.99770 * 1 2 3 30 30 H 1.09003 * 109.47179 * 60.00221 * 1 2 3 31 31 H 1.09005 * 109.47274 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46905 * 176.01906 * 3 2 1 33 33 H 1.08995 * 109.47230 * 296.01594 * 3 2 1 34 34 H 1.08993 * 109.47329 * 56.02045 * 3 2 1 35 35 H 0.96702 * 114.00212 * 59.99896 * 4 2 1 36 36 H 1.09004 * 109.45725 * 305.85168 * 10 9 8 37 37 H 1.08993 * 109.46497 * 65.83031 * 10 9 8 38 38 H 1.08998 * 109.50671 * 60.76280 * 11 10 9 39 39 H 1.09005 * 109.50076 * 180.87772 * 11 10 9 40 40 H 1.08993 * 109.52167 * 177.56186 * 12 11 10 41 41 H 1.08991 * 109.52505 * 297.69507 * 12 11 10 42 42 H 0.96994 * 120.00571 * 179.97438 * 18 17 15 43 43 H 1.09002 * 109.46748 * 294.17407 * 23 9 8 44 44 H 1.08998 * 109.46755 * 54.14335 * 23 9 8 45 45 H 1.09005 * 109.46876 * 329.16556 * 25 24 8 46 46 H 1.08995 * 109.46995 * 209.16682 * 25 24 8 47 47 H 1.09008 * 115.54670 * 29.33395 * 26 25 24 48 48 H 1.08999 * 117.50461 * 0.02562 * 27 26 25 49 49 H 1.09009 * 117.49574 * 145.02162 * 27 26 25 50 50 H 1.08992 * 117.50063 * 214.98063 * 28 26 25 51 51 H 1.08999 * 117.49939 * 0.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0323 -0.7104 1.2304 6 7 1.3080 -1.1353 2.2267 7 7 2.0573 -1.6901 3.1112 8 6 3.3095 -1.6539 2.7210 9 7 4.4024 -2.1533 3.4113 10 6 5.1736 -1.0685 4.0318 11 6 6.4468 -1.6404 4.6594 12 6 6.0662 -2.6869 5.7104 13 6 5.2230 -3.7802 5.0485 14 1 5.8136 -4.2808 4.2811 15 6 4.7945 -4.7837 6.0880 16 1 3.7444 -4.9553 6.2724 17 6 5.7433 -5.4828 6.8036 18 7 7.0222 -5.2744 6.5787 19 14 5.2122 -6.7272 8.0917 20 1 5.0652 -8.0626 7.4588 21 1 6.2371 -6.7977 9.1639 22 1 3.9122 -6.3105 8.6760 23 6 3.9853 -3.1464 4.4094 24 7 3.3324 -1.0316 1.5068 25 6 4.5069 -0.7584 0.6749 26 6 4.7600 -1.9458 -0.2560 27 6 6.0689 -2.7174 -0.0771 28 6 5.8778 -1.8062 -1.2913 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1276 1.4433 0.0713 33 1 1.7361 1.9353 -0.9235 34 1 1.6195 1.9765 0.8521 35 1 1.7209 -0.2701 -1.9980 36 1 5.4414 -0.3333 3.2728 37 1 4.5712 -0.5904 4.8041 38 1 7.0563 -2.1067 3.8855 39 1 7.0112 -0.8373 5.1334 40 1 6.9706 -3.1279 6.1294 41 1 5.4904 -2.2125 6.5050 42 1 7.6897 -5.7659 7.0824 43 1 3.3884 -2.6585 5.1800 44 1 3.3900 -3.9204 3.9250 45 1 5.3769 -0.6057 1.3137 46 1 4.3306 0.1382 0.0807 47 1 3.8755 -2.5143 -0.5440 48 1 6.7497 -2.3794 0.7041 49 1 6.0458 -3.7939 -0.2471 50 1 5.7292 -2.2831 -2.2600 51 1 6.4333 -0.8685 -1.3088 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646921866.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:52 Heat of formation + Delta-G solvation = 38.329149 kcal Electronic energy + Delta-G solvation = -30872.220615 eV Core-core repulsion = 27000.980714 eV Total energy + Delta-G solvation = -3871.239901 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -44.12385 -40.05797 -39.04184 -38.53686 -35.87112 -35.19980 -33.91910 -33.08683 -31.85085 -29.83486 -28.73011 -28.23755 -27.06393 -25.38407 -24.57431 -23.24680 -23.20438 -22.45084 -21.75606 -21.15853 -20.30607 -18.88825 -18.19980 -17.77815 -17.18176 -17.13760 -16.80058 -16.45980 -15.92017 -15.69127 -15.52234 -15.16364 -14.95745 -14.62991 -14.54822 -14.41995 -14.20253 -14.07000 -13.52393 -13.19953 -12.99157 -12.90283 -12.88996 -12.75586 -12.67443 -12.62366 -12.60209 -12.36634 -12.18772 -11.96743 -11.84089 -11.78620 -11.52500 -11.44242 -11.20164 -11.11799 -11.01835 -10.91649 -10.78962 -10.50699 -10.39976 -9.38961 -8.11012 -6.23884 0.64013 1.19618 1.40515 1.41589 1.52059 1.68725 2.41124 2.65474 2.82518 2.96852 3.16588 3.48806 3.62377 3.73996 3.76893 3.82365 3.87338 3.97744 4.06198 4.12596 4.15653 4.20147 4.37650 4.41917 4.49109 4.54757 4.59776 4.70076 4.74763 4.78288 4.81535 4.83998 4.87299 4.93483 4.95551 4.98704 5.04501 5.06595 5.17717 5.23552 5.26927 5.27961 5.34510 5.41883 5.60211 5.63356 5.71489 5.97922 6.11066 6.26159 6.36791 6.84211 6.86269 7.43403 7.67297 8.93886 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.015743 B = 0.003400 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.096982 B = 8232.772898 C = 9000.983759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.225 3.775 3 C -0.172 4.172 4 O -0.563 6.563 5 C 0.187 3.813 6 N -0.311 5.311 7 N -0.365 5.365 8 C 0.360 3.640 9 N -0.452 5.452 10 C 0.071 3.929 11 C -0.104 4.104 12 C -0.106 4.106 13 C 0.060 3.940 14 H 0.006 0.994 15 C -0.540 4.540 16 H 0.044 0.956 17 C 0.023 3.977 18 N -0.909 5.909 19 Si 0.951 3.049 20 H -0.277 1.277 21 H -0.277 1.277 22 H -0.273 1.273 23 C 0.107 3.893 24 N -0.454 5.454 25 C 0.145 3.855 26 C -0.166 4.166 27 C -0.189 4.189 28 C -0.134 4.134 29 H 0.065 0.935 30 H 0.105 0.895 31 H 0.046 0.954 32 H 0.064 0.936 33 H 0.110 0.890 34 H 0.066 0.934 35 H 0.406 0.594 36 H 0.093 0.907 37 H 0.033 0.967 38 H 0.065 0.935 39 H 0.087 0.913 40 H 0.070 0.930 41 H 0.025 0.975 42 H 0.263 0.737 43 H 0.026 0.974 44 H 0.043 0.957 45 H 0.097 0.903 46 H 0.125 0.875 47 H 0.085 0.915 48 H 0.095 0.905 49 H 0.080 0.920 50 H 0.106 0.894 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.339 17.536 -20.274 27.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.182 3.818 3 C -0.230 4.230 4 O -0.373 6.373 5 C -0.082 4.082 6 N -0.151 5.151 7 N -0.210 5.210 8 C 0.003 3.997 9 N -0.176 5.176 10 C -0.055 4.055 11 C -0.141 4.141 12 C -0.144 4.144 13 C 0.041 3.959 14 H 0.024 0.976 15 C -0.579 4.579 16 H 0.062 0.938 17 C -0.177 4.177 18 N -0.548 5.548 19 Si 0.777 3.223 20 H -0.203 1.203 21 H -0.203 1.203 22 H -0.198 1.198 23 C -0.020 4.020 24 N -0.146 5.146 25 C 0.024 3.976 26 C -0.186 4.186 27 C -0.226 4.226 28 C -0.171 4.171 29 H 0.084 0.916 30 H 0.123 0.877 31 H 0.065 0.935 32 H 0.083 0.917 33 H 0.129 0.871 34 H 0.085 0.915 35 H 0.259 0.741 36 H 0.111 0.889 37 H 0.051 0.949 38 H 0.084 0.916 39 H 0.106 0.894 40 H 0.088 0.912 41 H 0.043 0.957 42 H 0.072 0.928 43 H 0.045 0.955 44 H 0.061 0.939 45 H 0.115 0.885 46 H 0.143 0.857 47 H 0.104 0.896 48 H 0.113 0.887 49 H 0.099 0.901 50 H 0.125 0.875 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -3.758 16.585 -19.266 25.697 hybrid contribution 0.008 -0.629 0.635 0.893 sum -3.750 15.956 -18.631 24.815 Atomic orbital electron populations 1.22270 0.92303 1.02851 1.04333 1.19204 0.93747 0.89695 0.79163 1.22550 1.02081 0.93079 1.05269 1.86562 1.77092 1.57654 1.16037 1.25043 0.80132 1.03094 0.99970 1.73833 1.26838 1.13306 1.01152 1.74621 1.00363 1.22512 1.23465 1.22816 0.92178 0.97156 0.87568 1.58826 1.15962 1.13878 1.28979 1.22249 0.94800 0.91066 0.97426 1.21594 0.95313 0.98787 0.98442 1.21500 1.01119 0.95179 0.96625 1.18586 0.90863 0.92901 0.93545 0.97586 1.21399 0.92651 1.22667 1.21152 0.93752 1.25587 0.94944 0.98374 0.98765 1.69982 1.00373 1.42258 1.42152 0.85666 0.78095 0.79472 0.79088 1.20260 1.20263 1.19826 1.21872 0.98214 0.91434 0.90502 1.46260 1.09379 1.44238 1.14755 1.21761 0.84898 0.98916 0.92042 1.22251 0.93726 1.00011 1.02573 1.23056 0.99320 0.98351 1.01849 1.23017 0.98753 1.01839 0.93525 0.91580 0.87667 0.93459 0.91746 0.87108 0.91509 0.74130 0.88853 0.94901 0.91606 0.89448 0.91198 0.95663 0.92806 0.95531 0.93854 0.88487 0.85680 0.89638 0.88656 0.90137 0.87546 0.86367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.62 8.33 71.98 0.60 -2.02 16 2 C 0.23 4.01 1.04 -11.54 -0.01 3.99 16 3 C -0.17 -1.90 8.73 71.98 0.63 -1.27 16 4 O -0.56 -8.47 12.16 -148.98 -1.81 -10.28 16 5 C 0.19 5.52 6.63 137.64 0.91 6.43 16 6 N -0.31 -11.87 11.51 -49.54 -0.57 -12.44 16 7 N -0.36 -15.84 11.46 -58.00 -0.66 -16.51 16 8 C 0.36 13.85 6.88 260.11 1.79 15.64 16 9 N -0.45 -17.82 4.67 -706.16 -3.30 -21.11 16 10 C 0.07 2.38 5.31 86.33 0.46 2.84 16 11 C -0.10 -3.67 6.09 30.65 0.19 -3.48 16 12 C -0.11 -4.96 5.02 30.68 0.15 -4.81 16 13 C 0.06 3.12 2.26 -11.49 -0.03 3.10 16 14 H 0.01 0.34 8.14 -2.38 -0.02 0.32 16 15 C -0.54 -31.06 8.56 25.60 0.22 -30.84 16 16 H 0.04 2.59 7.74 -2.91 -0.02 2.56 16 17 C 0.02 1.28 5.30 84.65 0.45 1.73 16 18 N -0.91 -52.08 11.35 21.45 0.24 -51.83 16 19 Si 0.95 44.74 29.54 68.60 2.03 46.76 16 20 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 21 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 22 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 23 C 0.11 5.09 4.12 86.33 0.36 5.44 16 24 N -0.45 -13.53 2.81 -514.86 -1.45 -14.98 16 25 C 0.14 3.10 5.86 86.38 0.51 3.61 16 26 C -0.17 -3.72 5.74 -10.80 -0.06 -3.78 16 27 C -0.19 -4.35 10.18 30.59 0.31 -4.04 16 28 C -0.13 -2.09 10.25 30.60 0.31 -1.77 16 29 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.05 1.01 8.14 -2.38 -0.02 1.00 16 32 H 0.06 0.72 5.84 -2.39 -0.01 0.70 16 33 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 34 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.41 1.67 9.05 -74.06 -0.67 1.00 16 36 H 0.09 2.47 6.55 -2.38 -0.02 2.46 16 37 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 39 H 0.09 2.57 8.14 -2.38 -0.02 2.55 16 40 H 0.07 3.65 6.15 -2.39 -0.01 3.63 16 41 H 0.02 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 43 H 0.03 1.33 8.09 -2.39 -0.02 1.31 16 44 H 0.04 2.22 8.10 -2.39 -0.02 2.20 16 45 H 0.10 2.02 6.24 -2.38 -0.01 2.00 16 46 H 0.13 1.88 5.64 -2.39 -0.01 1.87 16 47 H 0.09 2.40 8.04 -2.38 -0.02 2.38 16 48 H 0.09 2.27 8.03 -2.39 -0.02 2.25 16 49 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 50 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 51 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -74.71 398.79 1.52 -73.19 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: 0.26 Total: 16.43 kcal Atomic # 6 Polarization: -16.01 SS G_CDS: 6.79 Total: -9.23 kcal Atomic # 7 Polarization: -111.13 SS G_CDS: -5.74 Total: -116.87 kcal Atomic # 8 Polarization: -8.47 SS G_CDS: -1.81 Total: -10.28 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.76 kcal Total: -74.71 1.52 -73.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646921866.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.516 kcal (2) G-P(sol) polarization free energy of solvation -74.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds