Wall clock time and date at job start Tue Mar 31 2020 20:13:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47142 * 2 1 4 4 O 1.42903 * 109.46459 * 119.99770 * 2 1 3 5 5 C 1.50696 * 109.47222 * 239.99436 * 2 1 3 6 6 N 1.30293 * 126.34797 * 5.03116 * 5 2 1 7 7 N 1.28535 * 110.05328 * 179.97438 * 6 5 2 8 8 C 1.31212 * 109.85681 * 359.97438 * 7 6 5 9 9 N 1.38585 * 126.47027 * 179.97438 * 8 7 6 10 10 C 1.46894 * 111.00546 * 236.07358 * 9 8 7 11 11 C 1.50694 * 109.47395 * 190.00024 * 10 9 8 12 12 H 1.08002 * 119.99935 * 0.02562 * 11 10 9 13 13 C 1.37882 * 120.00028 * 179.97438 * 11 10 9 14 14 N 1.31510 * 120.00214 * 0.02562 * 13 11 10 15 15 Si 1.86806 * 119.99911 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.46861 * 0.02562 * 15 13 11 17 17 H 1.48492 * 109.46845 * 120.00236 * 15 13 11 18 18 H 1.48501 * 109.46730 * 240.00416 * 15 13 11 19 19 C 1.46905 * 110.99941 * 0.03399 * 9 8 7 20 20 C 1.52997 * 109.47063 * 69.99274 * 19 9 8 21 21 C 1.52997 * 117.50066 * 243.74546 * 20 19 9 22 22 C 1.52999 * 117.49522 * 175.08739 * 20 19 9 23 23 N 1.36453 * 107.05704 * 359.76409 * 8 7 6 24 24 C 1.46499 * 127.13475 * 180.24218 * 23 8 7 25 25 C 1.52999 * 109.47347 * 270.15602 * 24 23 8 26 26 C 1.53008 * 117.49878 * 243.62772 * 25 24 23 27 27 C 1.53002 * 117.49987 * 175.00418 * 25 24 23 28 28 H 1.08997 * 109.47258 * 300.00296 * 1 2 3 29 29 H 1.08997 * 109.46943 * 60.00469 * 1 2 3 30 30 H 1.08999 * 109.47269 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46848 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.46819 * 299.99607 * 3 2 1 33 33 H 1.08997 * 109.47286 * 59.99721 * 3 2 1 34 34 H 0.96700 * 114.00311 * 60.00313 * 4 2 1 35 35 H 1.09004 * 109.47327 * 310.00572 * 10 9 8 36 36 H 1.09000 * 109.47007 * 69.99752 * 10 9 8 37 37 H 0.96993 * 120.00430 * 179.97438 * 14 13 11 38 38 H 1.09001 * 109.46954 * 189.99599 * 19 9 8 39 39 H 1.08997 * 109.46721 * 309.99523 * 19 9 8 40 40 H 1.08994 * 115.55296 * 29.42109 * 20 19 9 41 41 H 1.09006 * 117.49918 * 0.02562 * 21 20 19 42 42 H 1.08994 * 117.50256 * 145.02100 * 21 20 19 43 43 H 1.09004 * 117.49949 * 214.98216 * 22 20 19 44 44 H 1.08999 * 117.50383 * 0.02562 * 22 20 19 45 45 H 1.09002 * 109.47550 * 30.15574 * 24 23 8 46 46 H 1.09001 * 109.46969 * 150.15655 * 24 23 8 47 47 H 1.08998 * 115.54677 * 29.32759 * 25 24 23 48 48 H 1.08998 * 117.49475 * 359.97438 * 26 25 24 49 49 H 1.08998 * 117.49816 * 145.01654 * 26 25 24 50 50 H 1.08996 * 117.49604 * 214.97758 * 27 25 24 51 51 H 1.09000 * 117.50086 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0062 -0.6736 1.1669 5 6 2.0324 -0.7105 -1.2303 6 7 1.3042 -1.1692 -2.2086 7 7 2.0542 -1.7179 -3.0966 8 6 3.3114 -1.6375 -2.7296 9 7 4.4064 -2.1179 -3.4301 10 6 5.1940 -3.0440 -2.6056 11 6 6.4951 -3.3528 -3.3002 12 1 6.7152 -2.9054 -4.2583 13 6 7.4051 -4.2057 -2.7122 14 7 7.1373 -4.7500 -1.5454 15 14 9.0184 -4.5879 -3.5730 16 1 9.0772 -3.8541 -4.8627 17 1 10.1514 -4.1651 -2.7113 18 1 9.1089 -6.0478 -3.8290 19 6 3.9893 -2.7557 -4.6861 20 6 3.4848 -1.6869 -5.6577 21 6 2.0142 -1.7493 -6.0752 22 6 3.1100 -2.1375 -7.0710 23 7 3.3374 -0.9873 -1.5302 24 6 4.5183 -0.6575 -0.7284 25 6 4.8180 -1.8074 0.2352 26 6 4.7167 -1.5177 1.7342 27 6 6.0881 -1.7065 1.0824 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9562 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.7209 -1.5952 1.2330 35 1 5.3984 -2.5852 -1.6382 36 1 4.6326 -3.9668 -2.4586 37 1 7.7772 -5.3503 -1.1319 38 1 4.8383 -3.2770 -5.1282 39 1 3.1903 -3.4688 -4.4836 40 1 3.9351 -0.7005 -5.5469 41 1 1.4060 -2.5515 -5.6573 42 1 1.4971 -0.8040 -6.2392 43 1 3.3133 -1.4474 -7.8899 44 1 3.2224 -3.1954 -7.3085 45 1 5.3732 -0.5032 -1.3870 46 1 4.3287 0.2530 -0.1599 47 1 4.5190 -2.7980 -0.1076 48 1 4.4369 -0.5077 2.0337 49 1 4.3509 -2.3177 2.3778 50 1 6.6244 -2.6307 1.2973 51 1 6.7104 -0.8210 0.9529 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649272759.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:56 Heat of formation + Delta-G solvation = 79.527121 kcal Electronic energy + Delta-G solvation = -31452.481520 eV Core-core repulsion = 27583.028097 eV Total energy + Delta-G solvation = -3869.453423 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.97186 -39.51524 -38.99218 -38.41593 -37.02200 -35.12056 -34.68143 -33.40275 -30.49983 -29.28989 -28.68496 -28.24288 -27.23980 -24.33388 -23.88026 -23.23296 -23.09599 -22.65226 -21.68596 -21.07236 -20.76897 -19.01545 -18.51745 -17.62832 -17.28175 -17.13141 -16.66257 -16.04537 -15.94961 -15.73963 -15.69783 -15.52115 -14.91037 -14.84348 -14.45574 -14.37797 -13.62498 -13.58927 -13.46766 -13.22365 -13.11234 -12.87922 -12.85649 -12.77699 -12.64061 -12.51778 -12.30531 -12.29825 -12.26844 -12.20518 -12.03318 -11.69175 -11.39760 -11.30369 -11.27148 -11.08504 -10.96067 -10.84666 -10.80177 -10.57309 -10.51305 -9.04173 -8.24611 -6.33969 0.83661 1.37224 1.39686 1.42557 1.54140 1.87961 2.37237 2.83527 2.89100 3.05812 3.11436 3.20608 3.24782 3.68025 3.74178 3.85177 3.88721 4.04035 4.05990 4.10492 4.11689 4.16040 4.21408 4.37868 4.45717 4.47590 4.63169 4.70753 4.77227 4.80639 4.83940 4.86074 4.86429 4.93738 4.98217 4.99838 5.07213 5.09026 5.11846 5.19256 5.22762 5.27935 5.32754 5.34296 5.35087 5.38851 5.56632 5.78606 5.94612 5.99010 6.51525 6.62635 6.75481 7.34018 7.85829 8.85863 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.009484 B = 0.005537 C = 0.003709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2951.766710 B = 5055.752994 C = 7547.979727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.227 3.773 3 C -0.138 4.138 4 O -0.542 6.542 5 C 0.136 3.864 6 N -0.303 5.303 7 N -0.345 5.345 8 C 0.361 3.639 9 N -0.452 5.452 10 C 0.196 3.804 11 C -0.529 4.529 12 H 0.064 0.936 13 C 0.020 3.980 14 N -0.918 5.918 15 Si 0.962 3.038 16 H -0.265 1.265 17 H -0.276 1.276 18 H -0.282 1.282 19 C 0.116 3.884 20 C -0.152 4.152 21 C -0.148 4.148 22 C -0.163 4.163 23 N -0.463 5.463 24 C 0.151 3.849 25 C -0.177 4.177 26 C -0.123 4.123 27 C -0.168 4.168 28 H 0.094 0.906 29 H 0.067 0.933 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.100 0.900 34 H 0.385 0.615 35 H 0.067 0.933 36 H -0.046 1.046 37 H 0.265 0.735 38 H 0.083 0.917 39 H 0.028 0.972 40 H 0.090 0.910 41 H 0.082 0.918 42 H 0.090 0.910 43 H 0.111 0.889 44 H 0.096 0.904 45 H 0.079 0.921 46 H 0.123 0.877 47 H 0.068 0.932 48 H 0.119 0.881 49 H 0.094 0.906 50 H 0.078 0.922 51 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.262 11.316 4.923 14.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.183 3.817 3 C -0.196 4.196 4 O -0.347 6.347 5 C -0.133 4.133 6 N -0.144 5.144 7 N -0.191 5.191 8 C 0.004 3.996 9 N -0.175 5.175 10 C 0.072 3.928 11 C -0.567 4.567 12 H 0.082 0.918 13 C -0.181 4.181 14 N -0.557 5.557 15 Si 0.787 3.213 16 H -0.189 1.189 17 H -0.202 1.202 18 H -0.208 1.208 19 C -0.011 4.011 20 C -0.170 4.170 21 C -0.185 4.185 22 C -0.201 4.201 23 N -0.157 5.157 24 C 0.029 3.971 25 C -0.196 4.196 26 C -0.160 4.160 27 C -0.206 4.206 28 H 0.113 0.887 29 H 0.086 0.914 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.093 0.907 33 H 0.118 0.882 34 H 0.234 0.766 35 H 0.084 0.916 36 H -0.028 1.028 37 H 0.074 0.926 38 H 0.101 0.899 39 H 0.046 0.954 40 H 0.108 0.892 41 H 0.100 0.900 42 H 0.108 0.892 43 H 0.129 0.871 44 H 0.114 0.886 45 H 0.097 0.903 46 H 0.141 0.859 47 H 0.086 0.914 48 H 0.137 0.863 49 H 0.113 0.887 50 H 0.096 0.904 51 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -8.780 11.829 4.231 15.327 hybrid contribution 1.560 -1.860 0.130 2.431 sum -7.221 9.969 4.361 13.059 Atomic orbital electron populations 1.22213 0.91872 1.03222 1.03842 1.19548 0.94182 0.91286 0.76664 1.21890 1.01688 0.91581 1.04394 1.86549 1.77466 1.29827 1.40870 1.26146 0.79898 1.05568 1.01654 1.73779 1.26931 1.13391 1.00287 1.74574 0.97645 1.23160 1.23693 1.23204 0.92302 0.98012 0.86071 1.58878 1.14206 1.38786 1.05607 1.20078 0.91071 0.87164 0.94484 1.21273 1.01612 1.27779 1.06076 0.91781 1.25677 1.01656 0.95219 0.95506 1.70055 1.37179 1.31319 1.17106 0.85435 0.79138 0.77789 0.78907 1.18938 1.20192 1.20782 1.21462 0.98571 0.94229 0.86885 1.21970 0.99443 0.99100 0.96525 1.22733 0.90824 1.02518 1.02404 1.23078 1.02727 1.02432 0.91817 1.46143 1.08857 1.44024 1.16724 1.21566 0.84736 0.98216 0.92558 1.22227 1.05769 0.97551 0.94057 1.22991 0.97391 1.03856 0.91756 1.22898 0.91169 1.03196 1.03337 0.88718 0.91356 0.92579 0.92262 0.90746 0.88165 0.76595 0.91567 1.02803 0.92616 0.89867 0.95410 0.89153 0.89987 0.89152 0.87064 0.88570 0.90298 0.85926 0.91368 0.86252 0.88749 0.90352 0.87603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.94 8.32 71.98 0.60 -2.34 16 2 C 0.23 5.04 1.07 -11.54 -0.01 5.03 16 3 C -0.14 -2.51 8.75 71.98 0.63 -1.88 16 4 O -0.54 -11.05 10.69 -148.98 -1.59 -12.64 16 5 C 0.14 4.39 6.61 137.64 0.91 5.30 16 6 N -0.30 -11.54 11.51 -49.54 -0.57 -12.11 16 7 N -0.34 -14.60 9.61 -58.00 -0.56 -15.16 16 8 C 0.36 15.37 6.82 260.11 1.77 17.14 16 9 N -0.45 -20.50 4.53 -710.37 -3.22 -23.71 16 10 C 0.20 10.06 4.28 85.56 0.37 10.43 16 11 C -0.53 -28.44 8.31 25.60 0.21 -28.23 16 12 H 0.06 3.43 7.23 -2.91 -0.02 3.41 16 13 C 0.02 1.05 5.46 84.66 0.46 1.51 16 14 N -0.92 -51.31 13.29 21.45 0.28 -51.02 16 15 Si 0.96 42.26 29.54 68.60 2.03 44.29 16 16 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 17 H -0.28 -11.79 7.11 99.48 0.71 -11.09 16 18 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 19 C 0.12 4.91 4.79 86.30 0.41 5.32 16 20 C -0.15 -5.42 5.06 -10.80 -0.05 -5.48 16 21 C -0.15 -4.73 9.10 30.62 0.28 -4.45 16 22 C -0.16 -4.64 10.25 30.62 0.31 -4.32 16 23 N -0.46 -16.61 2.81 -514.86 -1.44 -18.05 16 24 C 0.15 4.82 5.11 86.38 0.44 5.26 16 25 C -0.18 -5.85 4.14 -10.79 -0.04 -5.90 16 26 C -0.12 -3.04 8.68 30.60 0.27 -2.77 16 27 C -0.17 -5.09 10.25 30.60 0.31 -4.78 16 28 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.06 1.13 5.57 -2.39 -0.01 1.11 16 32 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.39 7.25 9.04 -74.06 -0.67 6.58 16 35 H 0.07 3.34 3.06 -2.38 -0.01 3.33 16 36 H -0.05 -2.71 8.12 -2.39 -0.02 -2.73 16 37 H 0.26 14.02 8.31 -92.71 -0.77 13.24 16 38 H 0.08 3.70 6.60 -2.39 -0.02 3.68 16 39 H 0.03 1.25 7.49 -2.39 -0.02 1.23 16 40 H 0.09 3.38 8.14 -2.39 -0.02 3.36 16 41 H 0.08 2.85 8.03 -2.38 -0.02 2.84 16 42 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 43 H 0.11 2.64 8.14 -2.38 -0.02 2.62 16 44 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 45 H 0.08 2.85 7.76 -2.39 -0.02 2.83 16 46 H 0.12 3.09 5.13 -2.39 -0.01 3.07 16 47 H 0.07 2.93 6.96 -2.39 -0.02 2.91 16 48 H 0.12 2.44 7.76 -2.39 -0.02 2.42 16 49 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 50 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 51 H 0.11 2.83 8.14 -2.39 -0.02 2.81 16 Total: -1.00 -64.44 399.05 2.06 -62.38 By element: Atomic # 1 Polarization: 35.93 SS G_CDS: 0.27 Total: 36.20 kcal Atomic # 6 Polarization: -17.03 SS G_CDS: 6.87 Total: -10.17 kcal Atomic # 7 Polarization: -114.55 SS G_CDS: -5.50 Total: -120.05 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: -1.59 Total: -12.64 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Total: -64.44 2.06 -62.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649272759.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.904 kcal (2) G-P(sol) polarization free energy of solvation -64.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds