Wall clock time and date at job start Tue Mar 31 2020 19:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47112 * 2 1 4 4 C 1.50701 * 109.47115 * 119.99797 * 2 1 3 5 5 C 1.39673 * 126.07069 * 275.26897 * 4 2 1 6 6 C 1.38408 * 105.35801 * 180.10525 * 5 4 2 7 7 C 1.47166 * 126.88279 * 179.91622 * 6 5 4 8 8 O 1.21627 * 120.00197 * 179.58822 * 7 6 5 9 9 N 1.34783 * 119.99685 * 359.58843 * 7 6 5 10 10 C 1.46502 * 119.99695 * 184.38592 * 9 7 6 11 11 C 1.52994 * 109.46895 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47152 * 179.97438 * 11 10 9 13 13 N 1.46501 * 109.47367 * 180.02562 * 12 11 10 14 14 C 1.36940 * 120.00143 * 269.99984 * 13 12 11 15 15 H 1.08001 * 119.99920 * 142.30790 * 14 13 12 16 16 C 1.38814 * 119.99910 * 322.31670 * 14 13 12 17 17 N 1.31619 * 119.99952 * 337.24455 * 16 14 13 18 18 Si 1.86797 * 120.00126 * 157.25282 * 16 14 13 19 19 H 1.48497 * 109.47223 * 89.99222 * 18 16 14 20 20 H 1.48501 * 109.46996 * 209.99789 * 18 16 14 21 21 H 1.48505 * 109.46677 * 329.99730 * 18 16 14 22 22 C 1.46505 * 119.99866 * 90.00220 * 13 12 11 23 23 C 1.52999 * 117.49740 * 183.15300 * 22 13 12 24 24 C 1.52994 * 117.49701 * 114.49652 * 22 13 12 25 25 N 1.36594 * 106.23248 * 359.65392 * 6 5 4 26 26 C 1.46504 * 125.18954 * 180.20885 * 25 6 5 27 27 N 1.28441 * 109.62091 * 0.22447 * 25 6 5 28 28 H 1.08995 * 109.47788 * 300.00171 * 1 2 3 29 29 H 1.08997 * 109.47040 * 60.00075 * 1 2 3 30 30 H 1.09003 * 109.47036 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47293 * 239.99648 * 2 1 3 32 32 H 1.08997 * 109.47107 * 299.99884 * 3 2 1 33 33 H 1.08999 * 109.46993 * 60.00053 * 3 2 1 34 34 H 1.09003 * 109.46894 * 179.97438 * 3 2 1 35 35 H 1.08002 * 127.32033 * 0.02562 * 5 4 2 36 36 H 0.96995 * 120.00158 * 4.38245 * 9 7 6 37 37 H 1.09005 * 109.47069 * 60.00108 * 10 9 7 38 38 H 1.08997 * 109.47067 * 299.99855 * 10 9 7 39 39 H 1.08998 * 109.47288 * 60.00251 * 11 10 9 40 40 H 1.08997 * 109.47374 * 299.99948 * 11 10 9 41 41 H 1.09005 * 109.46911 * 60.00329 * 12 11 10 42 42 H 1.09005 * 109.47259 * 300.00434 * 12 11 10 43 43 H 0.96997 * 120.00211 * 185.03792 * 17 16 14 44 44 H 1.08994 * 115.54706 * 328.82385 * 22 13 12 45 45 H 1.09005 * 117.49922 * 359.97438 * 23 22 13 46 46 H 1.08995 * 117.49826 * 145.01388 * 23 22 13 47 47 H 1.09005 * 117.49412 * 214.97888 * 24 22 13 48 48 H 1.09003 * 117.50425 * 359.97124 * 24 22 13 49 49 H 1.09001 * 109.47182 * 86.26112 * 26 25 6 50 50 H 1.08996 * 109.46695 * 206.26643 * 26 25 6 51 51 H 1.09001 * 109.46841 * 326.25916 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.2086 -0.1417 2.4940 6 6 2.6849 -1.1660 3.2938 7 6 3.0333 -1.0830 4.7212 8 8 3.4361 -2.0696 5.3073 9 7 2.9060 0.0865 5.3790 10 6 3.3428 0.1940 6.7732 11 6 3.0898 1.6157 7.2787 12 6 3.5454 1.7279 8.7350 13 7 3.3026 3.0890 9.2192 14 6 4.2710 4.0475 9.0822 15 1 3.9949 5.0638 8.8430 16 6 5.6076 3.7127 9.2508 17 7 5.9362 2.6509 9.9556 18 14 6.9398 4.7693 8.4774 19 1 7.3431 5.8339 9.4309 20 1 8.1164 3.9234 8.1530 21 1 6.4187 5.3906 7.2332 22 6 2.0237 3.4248 9.8501 23 6 1.8026 4.8800 10.2680 24 6 2.0454 3.8063 11.3315 25 7 2.7610 -2.2709 2.4942 26 6 3.2136 -3.5957 2.9257 27 7 2.3756 -1.9709 1.3062 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 3.1300 1.4425 0.0005 35 1 2.0158 0.8804 2.7847 36 1 2.5252 0.8570 4.9293 37 1 4.4075 -0.0304 6.8387 38 1 2.7838 -0.5143 7.3847 39 1 2.0253 1.8406 7.2131 40 1 3.6490 2.3237 6.6671 41 1 4.6099 1.5029 8.8009 42 1 2.9858 1.0198 9.3463 43 1 6.8697 2.4576 10.1350 44 1 1.1597 2.8689 9.4861 45 1 2.6089 5.5874 10.0739 46 1 0.7931 5.2813 10.1792 47 1 1.1954 3.5016 11.9422 48 1 3.0111 3.8070 11.8370 49 1 2.3727 -4.1482 3.3449 50 1 3.6151 -4.1389 2.0702 51 1 3.9898 -3.4856 3.6830 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001660740320.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:19 Heat of formation + Delta-G solvation = 56.006288 kcal Electronic energy + Delta-G solvation = -28571.946866 eV Core-core repulsion = 24701.473504 eV Total energy + Delta-G solvation = -3870.473363 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -43.63906 -40.54119 -38.81395 -37.02300 -36.59793 -35.28193 -33.67734 -33.17310 -32.19489 -30.78604 -28.02867 -27.70227 -27.22362 -25.55484 -24.19881 -23.29491 -22.95939 -22.48888 -21.58283 -21.32607 -20.25633 -18.78042 -18.23567 -17.45942 -17.32216 -17.17483 -16.72357 -16.42456 -16.36050 -15.75538 -15.51686 -15.13292 -14.96550 -14.94974 -14.63026 -14.37507 -14.20325 -13.89690 -13.63826 -13.49845 -13.40677 -13.19816 -12.86499 -12.77183 -12.57937 -12.46400 -12.30890 -12.28033 -12.14749 -12.03932 -12.00233 -11.83453 -11.47271 -11.40810 -11.29426 -11.20930 -10.85503 -10.47011 -10.40415 -10.03952 -9.89114 -8.40709 -7.84617 -5.42000 0.15062 1.32832 1.43988 1.48399 1.50581 1.56166 2.07631 2.14680 2.49065 3.16568 3.36723 3.42513 3.45885 3.54951 3.89277 4.13313 4.19075 4.24010 4.25441 4.28972 4.33303 4.35810 4.45631 4.48916 4.54799 4.57456 4.60487 4.62660 4.71880 4.77726 4.90492 4.92292 4.98075 5.05827 5.08604 5.09918 5.13038 5.21680 5.33037 5.39723 5.42921 5.46611 5.49596 5.53507 5.58961 5.69632 5.72032 5.85534 6.36154 6.49845 6.96368 7.04900 7.18118 7.88288 8.39729 9.12901 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.011847 B = 0.002440 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2362.815756 B =11473.517465 C =11634.274191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.009 4.009 3 C -0.142 4.142 4 C 0.026 3.974 5 C -0.174 4.174 6 C -0.054 4.054 7 C 0.587 3.413 8 O -0.575 6.575 9 N -0.696 5.696 10 C 0.136 3.864 11 C -0.124 4.124 12 C 0.155 3.845 13 N -0.569 5.569 14 C -0.262 4.262 15 H 0.060 0.940 16 C -0.031 4.031 17 N -0.917 5.917 18 Si 0.950 3.050 19 H -0.287 1.287 20 H -0.294 1.294 21 H -0.267 1.267 22 C 0.104 3.896 23 C -0.180 4.180 24 C -0.224 4.224 25 N -0.268 5.268 26 C 0.085 3.915 27 N -0.295 5.295 28 H 0.059 0.941 29 H 0.080 0.920 30 H 0.044 0.956 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.066 0.934 34 H 0.049 0.951 35 H 0.184 0.816 36 H 0.416 0.584 37 H 0.050 0.950 38 H 0.067 0.933 39 H 0.073 0.927 40 H 0.057 0.943 41 H 0.060 0.940 42 H 0.031 0.969 43 H 0.252 0.748 44 H 0.115 0.885 45 H 0.073 0.927 46 H 0.111 0.889 47 H 0.099 0.901 48 H 0.051 0.949 49 H 0.092 0.908 50 H 0.112 0.888 51 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.445 -5.572 -18.633 22.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.029 4.029 3 C -0.200 4.200 4 C -0.130 4.130 5 C -0.203 4.203 6 C -0.182 4.182 7 C 0.373 3.627 8 O -0.455 6.455 9 N -0.347 5.347 10 C 0.012 3.988 11 C -0.164 4.164 12 C 0.028 3.972 13 N -0.286 5.286 14 C -0.393 4.393 15 H 0.077 0.923 16 C -0.229 4.229 17 N -0.560 5.560 18 Si 0.779 3.221 19 H -0.213 1.213 20 H -0.221 1.221 21 H -0.191 1.191 22 C -0.004 4.004 23 C -0.218 4.218 24 C -0.265 4.265 25 N -0.055 5.055 26 C -0.055 4.055 27 N -0.128 5.128 28 H 0.078 0.922 29 H 0.099 0.901 30 H 0.063 0.937 31 H 0.100 0.900 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.068 0.932 35 H 0.202 0.798 36 H 0.253 0.747 37 H 0.069 0.931 38 H 0.086 0.914 39 H 0.092 0.908 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.050 0.950 43 H 0.061 0.939 44 H 0.132 0.868 45 H 0.092 0.908 46 H 0.129 0.871 47 H 0.117 0.883 48 H 0.070 0.930 49 H 0.111 0.889 50 H 0.130 0.870 51 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -10.809 -7.520 -18.784 22.939 hybrid contribution 1.127 1.239 0.669 1.803 sum -9.682 -6.282 -18.115 21.479 Atomic orbital electron populations 1.21792 0.93000 1.01682 1.03127 1.19543 0.96305 0.95495 0.91530 1.21836 1.00923 0.93769 1.03478 1.22468 1.03484 0.89752 0.97327 1.22412 1.05112 1.00266 0.92467 1.21408 1.12925 0.90218 0.93656 1.17125 0.77550 0.83567 0.84464 1.90768 1.48735 1.36621 1.69393 1.45638 1.62879 1.12455 1.13764 1.21226 0.99191 0.98157 0.80234 1.22119 1.01818 0.93575 0.98858 1.20662 1.01066 0.84648 0.90788 1.43588 1.12001 1.07981 1.65042 1.19123 0.86004 0.92284 1.41848 0.92260 1.25839 0.99982 0.98704 0.98328 1.70068 1.16866 1.30034 1.39048 0.85546 0.79140 0.78269 0.79183 1.21343 1.22082 1.19122 1.21551 0.90086 0.96639 0.92118 1.23023 1.01819 0.92690 1.04283 1.23272 1.00703 1.07339 0.95137 1.45779 1.44642 1.10173 1.04916 1.22431 1.02221 0.78184 1.02642 1.73107 1.17752 1.18807 1.03124 0.92166 0.90133 0.93712 0.89959 0.90243 0.91487 0.93155 0.79848 0.74668 0.93114 0.91439 0.90836 0.92459 0.92156 0.95012 0.93915 0.86761 0.90808 0.87070 0.88253 0.93021 0.88939 0.86953 0.88499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 9.17 71.98 0.66 -1.06 16 2 C -0.01 -0.13 3.38 -11.54 -0.04 -0.17 16 3 C -0.14 -1.68 8.79 71.98 0.63 -1.04 16 4 C 0.03 0.54 6.13 43.05 0.26 0.81 16 5 C -0.17 -3.59 9.65 22.66 0.22 -3.37 16 6 C -0.05 -1.37 6.96 40.79 0.28 -1.08 16 7 C 0.59 16.86 7.80 86.59 0.68 17.54 16 8 O -0.57 -19.83 14.78 -4.12 -0.06 -19.89 16 9 N -0.70 -17.90 5.54 -466.62 -2.59 -20.49 16 10 C 0.14 4.17 5.68 86.38 0.49 4.66 16 11 C -0.12 -4.11 5.65 30.59 0.17 -3.94 16 12 C 0.15 6.67 5.34 86.38 0.46 7.13 16 13 N -0.57 -26.42 2.76 -678.02 -1.87 -28.29 16 14 C -0.26 -13.53 8.52 84.03 0.72 -12.82 16 15 H 0.06 3.07 6.68 -2.91 -0.02 3.05 16 16 C -0.03 -1.64 4.92 84.86 0.42 -1.22 16 17 N -0.92 -52.18 11.56 21.65 0.25 -51.93 16 18 Si 0.95 43.20 29.61 68.60 2.03 45.23 16 19 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 20 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 21 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 22 C 0.10 4.10 6.56 44.99 0.30 4.40 16 23 C -0.18 -6.53 9.80 30.62 0.30 -6.23 16 24 C -0.22 -8.71 10.36 30.61 0.32 -8.39 16 25 N -0.27 -6.68 3.75 -356.01 -1.33 -8.02 16 26 C 0.08 1.67 10.71 127.77 1.37 3.04 16 27 N -0.29 -7.28 11.90 -47.49 -0.57 -7.84 16 28 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.07 0.72 7.37 -2.39 -0.02 0.70 16 34 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.18 2.68 7.04 -2.91 -0.02 2.66 16 36 H 0.42 8.34 7.50 -92.71 -0.70 7.65 16 37 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 38 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 40 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 41 H 0.06 3.08 5.58 -2.38 -0.01 3.06 16 42 H 0.03 1.31 8.07 -2.38 -0.02 1.30 16 43 H 0.25 14.00 8.32 -92.71 -0.77 13.22 16 44 H 0.11 3.82 8.14 -2.39 -0.02 3.80 16 45 H 0.07 3.03 6.43 -2.38 -0.02 3.02 16 46 H 0.11 3.20 8.14 -2.39 -0.02 3.18 16 47 H 0.10 3.22 8.14 -2.38 -0.02 3.20 16 48 H 0.05 2.43 8.14 -2.39 -0.02 2.41 16 49 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 50 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 51 H 0.10 2.16 6.53 -2.39 -0.02 2.14 16 Total: -1.00 -67.11 414.45 3.32 -63.79 By element: Atomic # 1 Polarization: 28.98 SS G_CDS: 0.22 Total: 29.20 kcal Atomic # 6 Polarization: -8.99 SS G_CDS: 7.23 Total: -1.76 kcal Atomic # 7 Polarization: -110.47 SS G_CDS: -6.11 Total: -116.58 kcal Atomic # 8 Polarization: -19.83 SS G_CDS: -0.06 Total: -19.89 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -67.11 3.32 -63.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001660740320.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.799 kcal (2) G-P(sol) polarization free energy of solvation -67.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds