Wall clock time and date at job start Tue Mar 31 2020 19:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.46950 * 2 1 4 4 C 1.50704 * 109.47094 * 180.02562 * 3 2 1 5 5 N 1.34665 * 125.79645 * 265.13512 * 4 3 2 6 6 H 0.96999 * 124.85728 * 0.02562 * 5 4 3 7 7 C 1.36452 * 110.29131 * 180.29475 * 5 4 3 8 8 C 1.34483 * 108.86036 * 359.74745 * 7 5 4 9 9 C 1.36770 * 125.80517 * 84.99710 * 4 3 2 10 10 C 1.47263 * 126.93896 * 359.97438 * 9 4 3 11 11 O 1.21631 * 120.00000 * 359.70426 * 10 9 4 12 12 N 1.34771 * 119.99759 * 179.71033 * 10 9 4 13 13 C 1.46503 * 120.00070 * 180.02562 * 12 10 9 14 14 C 1.52996 * 109.47305 * 179.97438 * 13 12 10 15 15 N 1.46899 * 109.47462 * 179.97438 * 14 13 12 16 16 C 1.46900 * 111.00163 * 169.99896 * 15 14 13 17 17 C 1.53245 * 109.33848 * 172.74528 * 16 15 14 18 18 N 1.47085 * 108.52064 * 53.82868 * 17 16 15 19 19 C 1.36932 * 120.88213 * 128.79288 * 18 17 16 20 20 H 1.08002 * 119.99977 * 333.51665 * 19 18 17 21 21 C 1.38807 * 119.99998 * 153.50990 * 19 18 17 22 22 N 1.31621 * 119.99922 * 159.47661 * 21 19 18 23 23 Si 1.86799 * 120.00305 * 339.47796 * 21 19 18 24 24 H 1.48496 * 109.47486 * 91.94910 * 23 21 19 25 25 H 1.48498 * 109.47306 * 211.95251 * 23 21 19 26 26 H 1.48508 * 109.46864 * 331.95033 * 23 21 19 27 27 C 1.47080 * 118.23666 * 308.81221 * 18 17 16 28 28 C 1.46896 * 110.99839 * 45.68987 * 15 14 13 29 29 H 1.08995 * 109.46815 * 59.99953 * 1 2 3 30 30 H 1.08996 * 109.46711 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47073 * 299.99871 * 1 2 3 32 32 H 1.09002 * 109.46794 * 240.00482 * 2 1 3 33 33 H 1.08998 * 109.47437 * 120.00458 * 2 1 3 34 34 H 1.08996 * 109.47127 * 60.00162 * 3 2 1 35 35 H 1.09008 * 109.47638 * 299.99962 * 3 2 1 36 36 H 1.07999 * 125.56697 * 179.72728 * 7 5 4 37 37 H 1.07996 * 126.83580 * 180.02562 * 8 7 5 38 38 H 0.97004 * 120.00177 * 359.97438 * 12 10 9 39 39 H 1.08999 * 109.47402 * 59.99143 * 13 12 10 40 40 H 1.09000 * 109.46851 * 299.99234 * 13 12 10 41 41 H 1.08999 * 109.47456 * 59.99341 * 14 13 12 42 42 H 1.09008 * 109.47004 * 299.99588 * 14 13 12 43 43 H 1.09000 * 109.49448 * 52.78501 * 16 15 14 44 44 H 1.08995 * 109.49153 * 292.70371 * 16 15 14 45 45 H 1.08998 * 109.62846 * 173.53869 * 17 16 15 46 46 H 1.08997 * 109.62949 * 293.92586 * 17 16 15 47 47 H 0.97009 * 119.99909 * 179.97438 * 22 21 19 48 48 H 1.08995 * 109.62655 * 170.89395 * 27 18 17 49 49 H 1.08993 * 109.63223 * 291.48019 * 27 18 17 50 50 H 1.09001 * 109.49168 * 67.30395 * 28 15 14 51 51 H 1.08999 * 109.50008 * 307.21904 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4425 -0.0006 5 7 4.3352 1.5350 1.0874 6 1 4.0142 1.6121 1.9995 7 6 5.6499 1.5107 0.7228 8 6 5.7280 1.3958 -0.6148 9 6 4.3467 1.3460 -1.1060 10 6 3.9093 1.2230 -2.5068 11 8 2.7229 1.1937 -2.7730 12 7 4.8236 1.1428 -3.4936 13 6 4.3886 1.0210 -4.8872 14 6 5.6144 0.9494 -5.7999 15 7 5.1782 0.8267 -7.1972 16 6 6.3101 0.9928 -8.1186 17 6 5.8519 0.6798 -9.5471 18 7 4.6749 1.5075 -9.8521 19 6 4.6253 2.2662 -10.9909 20 1 5.5397 2.6137 -11.4486 21 6 3.3997 2.5886 -11.5572 22 7 3.3030 3.6133 -12.3776 23 14 1.8875 1.5682 -11.1551 24 1 1.1812 2.1663 -9.9939 25 1 0.9788 1.5459 -12.3294 26 1 2.3006 0.1811 -10.8224 27 6 3.5528 1.4990 -8.9012 28 6 4.1016 1.7797 -7.4982 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8901 33 1 1.8935 -0.5139 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9564 -0.8900 36 1 6.4903 1.5738 1.3982 37 1 6.6285 1.3491 -1.2091 38 1 5.7699 1.1665 -3.2813 39 1 3.7855 1.8881 -5.1567 40 1 3.7945 0.1147 -5.0045 41 1 6.2178 0.0826 -5.5305 42 1 6.2082 1.8560 -5.6825 43 1 7.1122 0.3108 -7.8363 44 1 6.6714 2.0200 -8.0694 45 1 6.6539 0.9113 -10.2479 46 1 5.5909 -0.3756 -9.6249 47 1 2.4465 3.8384 -12.7737 48 1 2.8350 2.2721 -9.1750 49 1 3.0677 0.5230 -8.9160 50 1 4.4936 2.7960 -7.4577 51 1 3.3020 1.6685 -6.7659 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001660934816.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:11 Heat of formation + Delta-G solvation = 36.454595 kcal Electronic energy + Delta-G solvation = -28772.254787 eV Core-core repulsion = 24900.933600 eV Total energy + Delta-G solvation = -3871.321188 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.59346 -39.28262 -38.33951 -35.61828 -35.11211 -33.90535 -31.78618 -31.27668 -30.46374 -30.23508 -28.90428 -26.56652 -25.84329 -23.49170 -23.27568 -22.48627 -21.79002 -21.28371 -20.79859 -19.67293 -19.30562 -18.03012 -16.81787 -16.20933 -16.16215 -15.62971 -15.30563 -15.15294 -14.85998 -14.42783 -14.38052 -14.23402 -14.02967 -13.96857 -13.72054 -13.53568 -13.41635 -13.14141 -12.92990 -12.74816 -12.41340 -12.09028 -11.88488 -11.75144 -11.65285 -11.56571 -11.47568 -11.31210 -10.90180 -10.83374 -10.55478 -10.26047 -9.99610 -9.88551 -9.76453 -9.40736 -9.22560 -8.96947 -8.60882 -8.48004 -7.99907 -6.91822 -5.90300 -3.25448 1.53661 2.11103 2.75197 3.28000 3.38951 3.47957 3.54652 3.59596 4.32402 4.38524 4.58887 4.61494 4.70281 4.80403 4.83354 5.00269 5.01719 5.03684 5.14597 5.15622 5.29736 5.37362 5.49556 5.49698 5.53118 5.60524 5.67802 5.68989 5.75046 5.86932 5.91404 5.96282 6.00765 6.04173 6.06383 6.07763 6.13558 6.26094 6.41004 6.42731 6.46681 6.61218 6.63889 6.69992 6.92436 7.07956 7.39238 7.44734 7.57609 7.98749 8.32407 8.36667 8.97554 9.76547 10.16037 11.25673 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.016477 B = 0.002316 C = 0.002107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.888307 B =12089.329090 C =13283.196329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.112 4.112 3 C -0.060 4.060 4 C 0.110 3.890 5 N -0.553 5.553 6 H 0.415 0.585 7 C -0.018 4.018 8 C -0.169 4.169 9 C -0.232 4.232 10 C 0.589 3.411 11 O -0.546 6.546 12 N -0.725 5.725 13 C 0.117 3.883 14 C 0.046 3.954 15 N -0.530 5.530 16 C 0.043 3.957 17 C 0.152 3.848 18 N -0.609 5.609 19 C -0.259 4.259 20 H 0.085 0.915 21 C 0.021 3.979 22 N -0.910 5.910 23 Si 0.883 3.117 24 H -0.287 1.287 25 H -0.304 1.304 26 H -0.269 1.269 27 C 0.130 3.870 28 C 0.034 3.966 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.050 0.950 32 H 0.072 0.928 33 H 0.053 0.947 34 H 0.066 0.934 35 H 0.105 0.895 36 H 0.169 0.831 37 H 0.145 0.855 38 H 0.398 0.602 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.035 0.965 43 H 0.067 0.933 44 H 0.034 0.966 45 H 0.065 0.935 46 H 0.031 0.969 47 H 0.262 0.738 48 H 0.075 0.925 49 H 0.034 0.966 50 H 0.036 0.964 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.220 -6.002 31.466 32.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.150 4.150 3 C -0.098 4.098 4 C -0.008 4.008 5 N -0.148 5.148 6 H 0.252 0.748 7 C -0.145 4.145 8 C -0.193 4.193 9 C -0.242 4.242 10 C 0.377 3.623 11 O -0.425 6.425 12 N -0.377 5.377 13 C -0.007 4.007 14 C -0.083 4.083 15 N -0.255 5.255 16 C -0.086 4.086 17 C 0.026 3.974 18 N -0.333 5.333 19 C -0.387 4.387 20 H 0.103 0.897 21 C -0.178 4.178 22 N -0.554 5.554 23 Si 0.714 3.286 24 H -0.215 1.215 25 H -0.232 1.232 26 H -0.194 1.194 27 C 0.004 3.996 28 C -0.096 4.096 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.091 0.909 33 H 0.071 0.929 34 H 0.084 0.916 35 H 0.123 0.877 36 H 0.186 0.814 37 H 0.162 0.838 38 H 0.231 0.769 39 H 0.091 0.909 40 H 0.095 0.905 41 H 0.094 0.906 42 H 0.053 0.947 43 H 0.085 0.915 44 H 0.052 0.948 45 H 0.084 0.916 46 H 0.049 0.951 47 H 0.072 0.928 48 H 0.093 0.907 49 H 0.052 0.948 50 H 0.055 0.945 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.092 -6.383 31.155 31.952 hybrid contribution 0.020 0.420 0.849 0.948 sum 3.111 -5.963 32.004 32.703 Atomic orbital electron populations 1.21747 0.95321 1.01799 1.01938 1.21400 0.96032 0.95319 1.02214 1.20417 0.86538 0.98759 1.04044 1.20363 0.93462 1.01298 0.85707 1.41611 1.06263 1.58176 1.08758 0.74848 1.21714 0.85658 1.10571 0.96556 1.22037 0.95792 1.07670 0.93821 1.20139 0.93164 1.18604 0.92279 1.17313 0.85328 0.75719 0.83899 1.90765 1.16492 1.51029 1.84196 1.45708 1.09723 1.75659 1.06591 1.21516 0.96986 1.03080 0.79107 1.22237 0.96002 1.00610 0.89450 1.61985 1.10500 1.52159 1.00881 1.22644 0.91837 0.99273 0.94821 1.20993 0.90361 0.94048 0.92030 1.44424 1.15692 1.51290 1.21925 1.18919 0.94366 1.24139 1.01241 0.89712 1.25262 0.97668 0.97759 0.97066 1.69841 1.25206 1.26096 1.34211 0.86952 0.83390 0.82316 0.75963 1.21513 1.23227 1.19401 1.21443 0.91227 0.99508 0.87438 1.22815 0.93947 0.93504 0.99299 0.92045 0.92639 0.93076 0.90887 0.92854 0.91576 0.87680 0.81405 0.83772 0.76862 0.90897 0.90536 0.90551 0.94699 0.91503 0.94795 0.91640 0.95145 0.92809 0.90716 0.94846 0.94534 0.90813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.91 37.16 0.37 -0.81 16 2 C -0.11 -0.96 5.92 -26.73 -0.16 -1.12 16 3 C -0.06 -0.52 5.07 -27.88 -0.14 -0.66 16 4 C 0.11 1.01 6.43 -81.88 -0.53 0.48 16 5 N -0.55 -3.42 5.90 -9.10 -0.05 -3.48 16 6 H 0.42 1.26 8.96 -40.82 -0.37 0.90 16 7 C -0.02 -0.11 11.89 -16.82 -0.20 -0.31 16 8 C -0.17 -1.37 10.56 -37.50 -0.40 -1.77 16 9 C -0.23 -2.51 6.29 -103.35 -0.65 -3.16 16 10 C 0.59 7.79 7.81 -12.60 -0.10 7.69 16 11 O -0.55 -8.86 14.74 5.25 0.08 -8.78 16 12 N -0.73 -8.31 5.55 -61.44 -0.34 -8.65 16 13 C 0.12 1.54 4.92 -4.04 -0.02 1.52 16 14 C 0.05 0.59 5.38 -3.83 -0.02 0.57 16 15 N -0.53 -8.81 4.78 -234.32 -1.12 -9.93 16 16 C 0.04 0.73 5.58 -3.70 -0.02 0.71 16 17 C 0.15 3.06 6.69 -3.60 -0.02 3.04 16 18 N -0.61 -14.95 2.82 -172.01 -0.48 -15.43 16 19 C -0.26 -7.37 10.08 -15.06 -0.15 -7.52 16 20 H 0.09 2.56 8.05 -52.49 -0.42 2.14 16 21 C 0.02 0.62 5.24 -17.43 -0.09 0.53 16 22 N -0.91 -28.39 13.97 55.49 0.78 -27.61 16 23 Si 0.88 23.05 24.31 -169.99 -4.13 18.92 16 24 H -0.29 -7.24 6.58 56.52 0.37 -6.87 16 25 H -0.30 -8.04 7.11 56.52 0.40 -7.64 16 26 H -0.27 -6.96 6.61 56.52 0.37 -6.58 16 27 C 0.13 2.96 4.35 -3.60 -0.02 2.95 16 28 C 0.03 0.63 5.04 -3.70 -0.02 0.61 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.81 7.95 -51.93 -0.41 0.40 16 33 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.10 1.17 6.75 -51.92 -0.35 0.82 16 36 H 0.17 0.50 8.06 -52.49 -0.42 0.08 16 37 H 0.14 0.88 7.69 -52.49 -0.40 0.48 16 38 H 0.40 3.48 7.60 -40.82 -0.31 3.17 16 39 H 0.07 1.09 6.18 -51.93 -0.32 0.76 16 40 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 41 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.03 0.43 8.08 -51.92 -0.42 0.01 16 43 H 0.07 0.93 8.11 -51.93 -0.42 0.51 16 44 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.07 1.28 7.95 -51.93 -0.41 0.87 16 46 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 48 H 0.07 1.85 4.60 -51.93 -0.24 1.61 16 49 H 0.03 0.78 6.94 -51.93 -0.36 0.42 16 50 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 51 H 0.07 1.27 5.73 -51.93 -0.30 0.97 16 LS Contribution 395.92 15.07 5.97 5.97 Total: -1.00 -34.96 395.92 -10.06 -45.02 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -8.58 Total: 1.22 kcal Atomic # 6 Polarization: 4.91 SS G_CDS: -2.16 Total: 2.75 kcal Atomic # 7 Polarization: -63.87 SS G_CDS: -1.22 Total: -65.09 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: 0.08 Total: -8.78 kcal Atomic # 14 Polarization: 23.05 SS G_CDS: -4.13 Total: 18.92 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.96 -10.06 -45.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001660934816.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.475 kcal (2) G-P(sol) polarization free energy of solvation -34.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds