Wall clock time and date at job start Tue Mar 31 2020 19:13:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.46950 * 2 1 4 4 C 1.50704 * 109.47094 * 180.02562 * 3 2 1 5 5 N 1.34665 * 125.79645 * 265.13512 * 4 3 2 6 6 H 0.96999 * 124.85728 * 0.02562 * 5 4 3 7 7 C 1.36452 * 110.29131 * 180.29475 * 5 4 3 8 8 C 1.34483 * 108.86036 * 359.74745 * 7 5 4 9 9 C 1.36770 * 125.80517 * 84.99710 * 4 3 2 10 10 C 1.47263 * 126.93896 * 359.97438 * 9 4 3 11 11 O 1.21631 * 120.00000 * 359.70426 * 10 9 4 12 12 N 1.34771 * 119.99759 * 179.71033 * 10 9 4 13 13 C 1.46503 * 120.00070 * 180.02562 * 12 10 9 14 14 C 1.52996 * 109.47305 * 179.97438 * 13 12 10 15 15 N 1.46899 * 109.47462 * 179.97438 * 14 13 12 16 16 C 1.46900 * 111.00163 * 169.99896 * 15 14 13 17 17 C 1.53245 * 109.33848 * 172.74528 * 16 15 14 18 18 N 1.47085 * 108.52064 * 53.82868 * 17 16 15 19 19 C 1.36932 * 120.88213 * 128.79288 * 18 17 16 20 20 H 1.08002 * 119.99977 * 333.51665 * 19 18 17 21 21 C 1.38807 * 119.99998 * 153.50990 * 19 18 17 22 22 N 1.31621 * 119.99922 * 159.47661 * 21 19 18 23 23 Si 1.86799 * 120.00305 * 339.47796 * 21 19 18 24 24 H 1.48496 * 109.47486 * 91.94910 * 23 21 19 25 25 H 1.48498 * 109.47306 * 211.95251 * 23 21 19 26 26 H 1.48508 * 109.46864 * 331.95033 * 23 21 19 27 27 C 1.47080 * 118.23666 * 308.81221 * 18 17 16 28 28 C 1.46896 * 110.99839 * 45.68987 * 15 14 13 29 29 H 1.08995 * 109.46815 * 59.99953 * 1 2 3 30 30 H 1.08996 * 109.46711 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47073 * 299.99871 * 1 2 3 32 32 H 1.09002 * 109.46794 * 240.00482 * 2 1 3 33 33 H 1.08998 * 109.47437 * 120.00458 * 2 1 3 34 34 H 1.08996 * 109.47127 * 60.00162 * 3 2 1 35 35 H 1.09008 * 109.47638 * 299.99962 * 3 2 1 36 36 H 1.07999 * 125.56697 * 179.72728 * 7 5 4 37 37 H 1.07996 * 126.83580 * 180.02562 * 8 7 5 38 38 H 0.97004 * 120.00177 * 359.97438 * 12 10 9 39 39 H 1.08999 * 109.47402 * 59.99143 * 13 12 10 40 40 H 1.09000 * 109.46851 * 299.99234 * 13 12 10 41 41 H 1.08999 * 109.47456 * 59.99341 * 14 13 12 42 42 H 1.09008 * 109.47004 * 299.99588 * 14 13 12 43 43 H 1.09000 * 109.49448 * 52.78501 * 16 15 14 44 44 H 1.08995 * 109.49153 * 292.70371 * 16 15 14 45 45 H 1.08998 * 109.62846 * 173.53869 * 17 16 15 46 46 H 1.08997 * 109.62949 * 293.92586 * 17 16 15 47 47 H 0.97009 * 119.99909 * 179.97438 * 22 21 19 48 48 H 1.08995 * 109.62655 * 170.89395 * 27 18 17 49 49 H 1.08993 * 109.63223 * 291.48019 * 27 18 17 50 50 H 1.09001 * 109.49168 * 67.30395 * 28 15 14 51 51 H 1.08999 * 109.50008 * 307.21904 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4425 -0.0006 5 7 4.3352 1.5350 1.0874 6 1 4.0142 1.6121 1.9995 7 6 5.6499 1.5107 0.7228 8 6 5.7280 1.3958 -0.6148 9 6 4.3467 1.3460 -1.1060 10 6 3.9093 1.2230 -2.5068 11 8 2.7229 1.1937 -2.7730 12 7 4.8236 1.1428 -3.4936 13 6 4.3886 1.0210 -4.8872 14 6 5.6144 0.9494 -5.7999 15 7 5.1782 0.8267 -7.1972 16 6 6.3101 0.9928 -8.1186 17 6 5.8519 0.6798 -9.5471 18 7 4.6749 1.5075 -9.8521 19 6 4.6253 2.2662 -10.9909 20 1 5.5397 2.6137 -11.4486 21 6 3.3997 2.5886 -11.5572 22 7 3.3030 3.6133 -12.3776 23 14 1.8875 1.5682 -11.1551 24 1 1.1812 2.1663 -9.9939 25 1 0.9788 1.5459 -12.3294 26 1 2.3006 0.1811 -10.8224 27 6 3.5528 1.4990 -8.9012 28 6 4.1016 1.7797 -7.4982 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8901 33 1 1.8935 -0.5139 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9564 -0.8900 36 1 6.4903 1.5738 1.3982 37 1 6.6285 1.3491 -1.2091 38 1 5.7699 1.1665 -3.2813 39 1 3.7855 1.8881 -5.1567 40 1 3.7945 0.1147 -5.0045 41 1 6.2178 0.0826 -5.5305 42 1 6.2082 1.8560 -5.6825 43 1 7.1122 0.3108 -7.8363 44 1 6.6714 2.0200 -8.0694 45 1 6.6539 0.9113 -10.2479 46 1 5.5909 -0.3756 -9.6249 47 1 2.4465 3.8384 -12.7737 48 1 2.8350 2.2721 -9.1750 49 1 3.0677 0.5230 -8.9160 50 1 4.4936 2.7960 -7.4577 51 1 3.3020 1.6685 -6.7659 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001660934816.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:09 Heat of formation + Delta-G solvation = 10.189399 kcal Electronic energy + Delta-G solvation = -28773.393732 eV Core-core repulsion = 24900.933600 eV Total energy + Delta-G solvation = -3872.460132 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.19979 -40.39274 -39.69132 -36.98201 -35.93694 -35.24330 -33.63927 -32.24846 -31.96853 -30.85104 -30.22074 -27.84540 -26.82002 -25.07348 -24.81382 -23.62865 -22.53225 -22.36166 -21.46347 -21.10265 -20.41570 -18.81463 -18.60395 -17.62222 -17.01780 -16.88430 -16.59145 -16.01039 -15.94364 -15.82892 -15.66168 -15.54338 -15.49770 -14.95271 -14.91218 -14.54802 -14.29509 -14.24578 -14.03833 -13.76764 -13.74566 -13.60205 -13.41338 -12.96244 -12.75819 -12.70293 -12.39909 -12.24125 -12.21855 -12.12132 -12.11439 -11.78825 -11.59567 -11.57593 -11.43432 -10.89466 -10.74212 -10.12190 -9.69935 -9.39416 -9.09841 -8.91263 -8.18345 -5.49253 0.76586 1.29411 1.39849 1.49638 1.58093 2.07179 2.40215 2.48691 2.60105 3.00277 3.08936 3.35812 3.77811 3.78277 4.02314 4.05230 4.09100 4.14884 4.16542 4.21813 4.34043 4.38784 4.41447 4.45264 4.55162 4.56402 4.56672 4.69591 4.70833 4.80654 4.83471 4.89368 4.93933 4.94061 5.00112 5.00515 5.00838 5.11394 5.23280 5.29892 5.36920 5.38469 5.50056 5.81547 5.82799 6.00900 6.03425 6.07194 6.17332 6.62526 6.74274 6.88250 7.39179 7.59690 8.02884 9.01398 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.016477 B = 0.002316 C = 0.002107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.888307 B =12089.329090 C =13283.196329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.106 4.106 3 C -0.057 4.057 4 C 0.101 3.899 5 N -0.538 5.538 6 H 0.432 0.568 7 C -0.002 4.002 8 C -0.186 4.186 9 C -0.265 4.265 10 C 0.580 3.420 11 O -0.588 6.588 12 N -0.714 5.714 13 C 0.125 3.875 14 C 0.056 3.944 15 N -0.537 5.537 16 C 0.054 3.946 17 C 0.144 3.856 18 N -0.624 5.624 19 C -0.246 4.246 20 H 0.057 0.943 21 C -0.035 4.035 22 N -0.956 5.956 23 Si 0.944 3.056 24 H -0.276 1.276 25 H -0.309 1.309 26 H -0.264 1.264 27 C 0.125 3.875 28 C 0.047 3.953 29 H 0.042 0.958 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.040 0.960 33 H 0.070 0.930 34 H 0.093 0.907 35 H 0.074 0.926 36 H 0.207 0.793 37 H 0.161 0.839 38 H 0.413 0.587 39 H 0.052 0.948 40 H 0.061 0.939 41 H 0.105 0.895 42 H 0.047 0.953 43 H 0.108 0.892 44 H 0.025 0.975 45 H 0.065 0.935 46 H 0.037 0.963 47 H 0.262 0.738 48 H 0.051 0.949 49 H 0.033 0.967 50 H 0.025 0.975 51 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.805 -7.325 35.488 36.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.144 4.144 3 C -0.095 4.095 4 C -0.019 4.019 5 N -0.135 5.135 6 H 0.272 0.728 7 C -0.129 4.129 8 C -0.210 4.210 9 C -0.275 4.275 10 C 0.371 3.629 11 O -0.470 6.470 12 N -0.366 5.366 13 C 0.001 3.999 14 C -0.072 4.072 15 N -0.262 5.262 16 C -0.075 4.075 17 C 0.019 3.981 18 N -0.349 5.349 19 C -0.376 4.376 20 H 0.074 0.926 21 C -0.230 4.230 22 N -0.603 5.603 23 Si 0.773 3.227 24 H -0.203 1.203 25 H -0.238 1.238 26 H -0.189 1.189 27 C 0.000 4.000 28 C -0.083 4.083 29 H 0.062 0.938 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.059 0.941 33 H 0.089 0.911 34 H 0.111 0.889 35 H 0.092 0.908 36 H 0.224 0.776 37 H 0.179 0.821 38 H 0.249 0.751 39 H 0.070 0.930 40 H 0.080 0.920 41 H 0.123 0.877 42 H 0.065 0.935 43 H 0.126 0.874 44 H 0.044 0.956 45 H 0.083 0.917 46 H 0.055 0.945 47 H 0.071 0.929 48 H 0.069 0.931 49 H 0.051 0.949 50 H 0.043 0.957 51 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 4.732 -7.735 35.249 36.397 hybrid contribution -0.355 0.822 -0.315 0.950 sum 4.377 -6.912 34.934 35.879 Atomic orbital electron populations 1.21737 0.94804 1.02098 1.02000 1.21329 0.96471 0.95219 1.01387 1.20331 0.86738 0.98595 1.03805 1.20383 0.93692 1.01376 0.86429 1.41624 1.06129 1.56771 1.08940 0.72845 1.22325 0.86266 1.07842 0.96498 1.22313 0.95040 1.08659 0.94971 1.20179 0.95226 1.20864 0.91256 1.17823 0.84932 0.74950 0.85230 1.90739 1.18237 1.53027 1.84960 1.45538 1.10411 1.75099 1.05559 1.21273 0.96976 1.01402 0.80298 1.22237 0.95822 1.02466 0.86700 1.61938 1.10157 1.51180 1.02932 1.22520 0.92537 0.99851 0.92594 1.21220 0.88729 0.93584 0.94528 1.44582 1.17421 1.51791 1.21131 1.18893 0.93250 1.23419 1.02003 0.92559 1.25853 1.00580 0.98768 0.97804 1.69958 1.25908 1.27913 1.36478 0.85960 0.80111 0.80853 0.75735 1.20326 1.23787 1.18876 1.21433 0.90666 0.98549 0.89375 1.22547 0.95300 0.93430 0.96998 0.93841 0.92238 0.91110 0.94112 0.91089 0.88871 0.90773 0.77613 0.82109 0.75068 0.92965 0.92036 0.87726 0.93477 0.87439 0.95621 0.91656 0.94470 0.92949 0.93085 0.94867 0.95662 0.89375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 9.91 71.98 0.71 -1.55 16 2 C -0.11 -1.80 5.92 30.60 0.18 -1.62 16 3 C -0.06 -0.96 5.07 29.85 0.15 -0.80 16 4 C 0.10 1.72 6.43 41.78 0.27 1.99 16 5 N -0.54 -4.98 5.90 -182.71 -1.08 -6.06 16 6 H 0.43 1.02 8.96 -92.71 -0.83 0.19 16 7 C 0.00 -0.01 11.89 83.11 0.99 0.97 16 8 C -0.19 -2.52 10.56 23.62 0.25 -2.27 16 9 C -0.27 -5.49 6.29 -19.04 -0.12 -5.61 16 10 C 0.58 15.44 7.81 86.62 0.68 16.12 16 11 O -0.59 -19.99 14.74 -4.13 -0.06 -20.05 16 12 N -0.71 -15.59 5.55 -466.53 -2.59 -18.18 16 13 C 0.12 3.17 4.92 86.38 0.43 3.60 16 14 C 0.06 1.26 5.38 86.30 0.46 1.72 16 15 N -0.54 -16.56 4.78 -895.24 -4.28 -20.84 16 16 C 0.05 1.66 5.58 86.39 0.48 2.14 16 17 C 0.14 5.63 6.69 86.35 0.58 6.20 16 18 N -0.62 -30.61 2.82 -698.12 -1.97 -32.58 16 19 C -0.25 -14.37 10.08 84.03 0.85 -13.52 16 20 H 0.06 3.54 8.05 -2.91 -0.02 3.51 16 21 C -0.04 -2.13 5.24 84.86 0.44 -1.69 16 22 N -0.96 -61.58 13.97 21.65 0.30 -61.28 16 23 Si 0.94 48.80 24.31 68.60 1.67 50.47 16 24 H -0.28 -13.64 6.58 99.48 0.65 -12.98 16 25 H -0.31 -16.09 7.11 99.48 0.71 -15.38 16 26 H -0.26 -13.26 6.61 99.48 0.66 -12.61 16 27 C 0.13 5.68 4.35 86.35 0.38 6.05 16 28 C 0.05 1.72 5.04 86.39 0.44 2.15 16 29 H 0.04 0.80 8.14 -2.39 -0.02 0.79 16 30 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.04 0.95 7.95 -2.39 -0.02 0.93 16 33 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.07 1.74 6.75 -2.38 -0.02 1.73 16 36 H 0.21 0.12 8.06 -2.91 -0.02 0.09 16 37 H 0.16 1.46 7.69 -2.91 -0.02 1.44 16 38 H 0.41 6.31 7.60 -92.71 -0.70 5.61 16 39 H 0.05 1.55 6.18 -2.39 -0.01 1.54 16 40 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.05 1.01 8.08 -2.38 -0.02 0.99 16 43 H 0.11 2.50 8.11 -2.39 -0.02 2.48 16 44 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 45 H 0.06 2.51 7.95 -2.39 -0.02 2.49 16 46 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 47 H 0.26 16.02 8.31 -92.70 -0.77 15.25 16 48 H 0.05 2.54 4.60 -2.39 -0.01 2.53 16 49 H 0.03 1.52 6.94 -2.39 -0.02 1.50 16 50 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 51 H 0.09 2.99 5.73 -2.39 -0.01 2.97 16 Total: -1.00 -79.77 395.92 -1.54 -81.31 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -0.70 Total: 13.32 kcal Atomic # 6 Polarization: 6.72 SS G_CDS: 7.16 Total: 13.88 kcal Atomic # 7 Polarization: -129.32 SS G_CDS: -9.61 Total: -138.93 kcal Atomic # 8 Polarization: -19.99 SS G_CDS: -0.06 Total: -20.05 kcal Atomic # 14 Polarization: 48.80 SS G_CDS: 1.67 Total: 50.47 kcal Total: -79.77 -1.54 -81.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001660934816.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.502 kcal (2) G-P(sol) polarization free energy of solvation -79.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds