Wall clock time and date at job start Tue Mar 31 2020 19:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.46914 * 2 1 4 4 C 1.50694 * 109.47324 * 120.00446 * 2 1 3 5 5 C 1.39678 * 126.06844 * 275.28425 * 4 2 1 6 6 C 1.38406 * 105.35644 * 180.09254 * 5 4 2 7 7 C 1.47160 * 126.88067 * 179.91667 * 6 5 4 8 8 O 1.21633 * 120.00239 * 205.52680 * 7 6 5 9 9 N 1.34776 * 120.00413 * 25.52886 * 7 6 5 10 10 C 1.46926 * 120.62794 * 0.59198 * 9 7 6 11 11 C 1.53187 * 108.77518 * 126.41735 * 10 9 7 12 12 C 1.53040 * 109.31330 * 54.63822 * 11 10 9 13 13 C 1.53049 * 109.53517 * 298.63213 * 12 11 10 14 14 H 1.08994 * 109.52547 * 301.39997 * 13 12 11 15 15 C 1.53003 * 109.49627 * 181.31522 * 13 12 11 16 16 N 1.46500 * 109.46887 * 175.16576 * 15 13 12 17 17 C 1.36935 * 119.99713 * 180.02562 * 16 15 13 18 18 H 1.07999 * 120.00282 * 359.97438 * 17 16 15 19 19 C 1.38807 * 119.99989 * 179.97438 * 17 16 15 20 20 N 1.31619 * 119.99785 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00328 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47178 * 270.00142 * 21 19 17 23 23 H 1.48501 * 109.46949 * 29.99951 * 21 19 17 24 24 H 1.48499 * 109.47355 * 149.99905 * 21 19 17 25 25 C 1.46926 * 120.63315 * 180.62282 * 9 7 6 26 26 N 1.36593 * 106.23282 * 359.65225 * 6 5 4 27 27 C 1.46508 * 125.19061 * 180.24919 * 26 6 5 28 28 N 1.28448 * 109.62404 * 0.22510 * 26 6 5 29 29 H 1.08995 * 109.46739 * 299.99433 * 1 2 3 30 30 H 1.08998 * 109.47358 * 59.99679 * 1 2 3 31 31 H 1.09000 * 109.47286 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.46739 * 240.00567 * 2 1 3 33 33 H 1.09001 * 109.46899 * 179.97438 * 3 2 1 34 34 H 1.08998 * 109.47370 * 300.00313 * 3 2 1 35 35 H 1.09001 * 109.46640 * 60.00389 * 3 2 1 36 36 H 1.07996 * 127.31969 * 359.96928 * 5 4 2 37 37 H 1.09002 * 109.58978 * 246.20464 * 10 9 7 38 38 H 1.09003 * 109.58932 * 6.48670 * 10 9 7 39 39 H 1.08999 * 109.50139 * 174.58534 * 11 10 9 40 40 H 1.08998 * 109.49712 * 294.65120 * 11 10 9 41 41 H 1.08997 * 109.45983 * 178.61735 * 12 11 10 42 42 H 1.08999 * 109.46386 * 58.65725 * 12 11 10 43 43 H 1.09000 * 109.47030 * 55.16591 * 15 13 12 44 44 H 1.08995 * 109.47044 * 295.16789 * 15 13 12 45 45 H 0.96999 * 120.00094 * 359.97438 * 16 15 13 46 46 H 0.97001 * 120.00493 * 359.97438 * 20 19 17 47 47 H 1.09002 * 109.58866 * 113.79468 * 25 9 7 48 48 H 1.08998 * 109.58907 * 353.36970 * 25 9 7 49 49 H 1.09006 * 109.47089 * 84.40830 * 27 26 6 50 50 H 1.08997 * 109.46944 * 204.40653 * 27 26 6 51 51 H 1.08999 * 109.46580 * 324.41155 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2303 5 6 2.2085 -0.1419 2.4940 6 6 2.6846 -1.1663 3.2937 7 6 3.0328 -1.0835 4.7211 8 8 3.8426 -1.8571 5.1955 9 7 2.4543 -0.1504 5.5028 10 6 1.4647 0.7828 4.9472 11 6 0.1917 0.7149 5.7967 12 6 0.5469 0.9747 7.2624 13 6 1.5137 -0.1051 7.7540 14 1 1.0526 -1.0861 7.6401 15 6 1.8425 0.1367 9.2285 16 7 2.6749 -0.9599 9.7294 17 6 3.0955 -0.9600 11.0326 18 1 2.8141 -0.1515 11.6910 19 6 3.8837 -1.9993 11.5074 20 7 4.2263 -2.9849 10.7051 21 14 4.4582 -1.9992 13.2848 22 1 5.7622 -1.2956 13.3835 23 1 3.4547 -1.3025 14.1292 24 1 4.6141 -3.3992 13.7548 25 6 2.8017 -0.0465 6.9266 26 7 2.7609 -2.2711 2.4940 27 6 3.2127 -3.5962 2.9255 28 7 2.3757 -1.9710 1.3059 29 1 -0.3632 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5137 -0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6767 1.9563 0.8901 36 1 2.0162 0.8802 2.7846 37 1 1.8652 1.7963 4.9695 38 1 1.2356 0.5030 3.9189 39 1 -0.5150 1.4707 5.4542 40 1 -0.2576 -0.2735 5.7004 41 1 -0.3607 0.9513 7.8656 42 1 1.0183 1.9532 7.3540 43 1 0.9180 0.1833 9.8040 44 1 2.3820 1.0783 9.3308 45 1 2.9273 -1.6863 9.1382 46 1 3.9277 -2.9852 9.7822 47 1 3.3113 0.8994 7.1104 48 1 3.4530 -0.8749 7.2053 49 1 2.3787 -4.1362 3.3740 50 1 3.5842 -4.1517 2.0644 51 1 4.0112 -3.4866 3.6593 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661827732.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:50 Heat of formation + Delta-G solvation = 55.531000 kcal Electronic energy + Delta-G solvation = -29835.835658 eV Core-core repulsion = 25965.341685 eV Total energy + Delta-G solvation = -3870.493973 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.83704 -40.01978 -37.70413 -36.21797 -35.24214 -33.40271 -32.45036 -31.88354 -31.16137 -29.40207 -27.49942 -27.02144 -25.90791 -25.37880 -23.41471 -22.99466 -22.35361 -21.49812 -20.74182 -19.82069 -18.82233 -17.39870 -17.12398 -16.75487 -16.40139 -15.88518 -15.19881 -15.05825 -14.73362 -14.52175 -14.45034 -14.29543 -13.96181 -13.76157 -13.59447 -13.48353 -13.07931 -12.95685 -12.78969 -12.72758 -12.53400 -12.45226 -12.38932 -11.71267 -11.64317 -11.47082 -11.38173 -11.16911 -10.86224 -10.72042 -10.67650 -10.60140 -10.42142 -10.26079 -10.01588 -9.95658 -9.23419 -9.13151 -9.01500 -8.86096 -8.63765 -6.96877 -6.05761 -3.06049 1.16833 2.16010 2.34416 2.95859 3.06511 3.53681 3.59169 3.73009 4.09420 4.21910 4.57005 4.63531 4.73803 4.76620 4.83028 4.86832 4.91832 5.01977 5.05294 5.09885 5.11912 5.25209 5.26078 5.31368 5.33583 5.41506 5.48576 5.53280 5.54562 5.63958 5.65585 5.71346 5.73478 5.76496 5.85232 5.95375 5.96002 6.00336 6.02410 6.06495 6.26381 6.29737 6.37577 6.49229 6.55451 6.67104 6.77521 7.28342 7.84298 7.87855 8.04957 8.80199 9.27074 10.13377 10.27991 11.42675 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.018708 B = 0.002702 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.299633 B =10360.003123 C =11429.575885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.009 4.009 3 C -0.144 4.144 4 C 0.032 3.968 5 C -0.200 4.200 6 C -0.023 4.023 7 C 0.584 3.416 8 O -0.531 6.531 9 N -0.591 5.591 10 C 0.072 3.928 11 C -0.132 4.132 12 C -0.113 4.113 13 C -0.108 4.108 14 H 0.072 0.928 15 C 0.167 3.833 16 N -0.745 5.745 17 C -0.334 4.334 18 H 0.064 0.936 19 C -0.045 4.045 20 N -0.943 5.943 21 Si 1.083 2.917 22 H -0.295 1.295 23 H -0.295 1.295 24 H -0.288 1.288 25 C 0.123 3.877 26 N -0.257 5.257 27 C 0.081 3.919 28 N -0.279 5.279 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.083 0.917 33 H 0.057 0.943 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.171 0.829 37 H 0.072 0.928 38 H 0.113 0.887 39 H 0.075 0.925 40 H 0.065 0.935 41 H 0.067 0.933 42 H 0.065 0.935 43 H 0.023 0.977 44 H 0.021 0.979 45 H 0.367 0.633 46 H 0.256 0.744 47 H 0.071 0.929 48 H 0.101 0.899 49 H 0.084 0.916 50 H 0.096 0.904 51 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.222 9.409 -23.265 26.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.029 4.029 3 C -0.202 4.202 4 C -0.125 4.125 5 C -0.228 4.228 6 C -0.152 4.152 7 C 0.370 3.630 8 O -0.408 6.408 9 N -0.323 5.323 10 C -0.050 4.050 11 C -0.170 4.170 12 C -0.151 4.151 13 C -0.128 4.128 14 H 0.091 0.909 15 C 0.038 3.962 16 N -0.391 5.391 17 C -0.465 4.465 18 H 0.082 0.918 19 C -0.243 4.243 20 N -0.588 5.588 21 Si 0.914 3.086 22 H -0.223 1.223 23 H -0.222 1.222 24 H -0.214 1.214 25 C 0.001 3.999 26 N -0.044 5.044 27 C -0.059 4.059 28 N -0.111 5.111 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.101 0.899 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.188 0.812 37 H 0.090 0.910 38 H 0.130 0.870 39 H 0.093 0.907 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.041 0.959 44 H 0.039 0.961 45 H 0.201 0.799 46 H 0.068 0.932 47 H 0.089 0.911 48 H 0.119 0.881 49 H 0.102 0.898 50 H 0.115 0.885 51 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -7.809 7.175 -22.255 24.653 hybrid contribution -0.919 1.341 -0.693 1.767 sum -8.729 8.515 -22.948 25.987 Atomic orbital electron populations 1.21818 0.93914 1.02183 1.02073 1.19412 0.95617 0.94941 0.92949 1.21832 1.01441 0.94685 1.02211 1.21944 1.04186 0.90213 0.96175 1.22291 1.07572 1.00076 0.92856 1.21429 1.10241 0.89388 0.94117 1.16990 0.81352 0.81083 0.83538 1.90851 1.33976 1.41491 1.74433 1.47838 1.41203 1.32924 1.10371 1.22685 0.88863 0.93404 1.00075 1.21899 0.96783 1.02486 0.95861 1.21532 0.99515 0.98887 0.95162 1.21716 0.95199 0.99576 0.96278 0.90920 1.20567 0.94150 0.91971 0.89464 1.42424 1.61391 1.24443 1.10805 1.20034 1.30144 1.08476 0.87823 0.91768 1.25782 0.98358 0.93700 1.06487 1.70829 1.48206 1.32988 1.06781 0.83194 0.75593 0.75688 0.74103 1.22317 1.22203 1.21407 1.21785 0.97489 1.03838 0.76740 1.45549 1.44334 1.09597 1.04882 1.22405 1.02395 0.78590 1.02526 1.73119 1.17270 1.17840 1.02910 0.92302 0.92014 0.92539 0.89870 0.92353 0.91912 0.92179 0.81207 0.91008 0.87001 0.90652 0.91622 0.91428 0.91608 0.95912 0.96080 0.79888 0.93240 0.91102 0.88067 0.89753 0.88520 0.86925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.94 9.18 37.16 0.34 -0.60 16 2 C -0.01 -0.07 3.38 -91.77 -0.31 -0.38 16 3 C -0.14 -0.88 8.79 37.16 0.33 -0.55 16 4 C 0.03 0.34 6.12 -82.47 -0.51 -0.16 16 5 C -0.20 -2.16 7.86 -38.98 -0.31 -2.47 16 6 C -0.02 -0.31 6.59 -82.06 -0.54 -0.85 16 7 C 0.58 9.22 7.57 -12.64 -0.10 9.13 16 8 O -0.53 -10.26 14.51 5.25 0.08 -10.18 16 9 N -0.59 -8.30 2.97 -174.13 -0.52 -8.82 16 10 C 0.07 0.72 5.46 -3.71 -0.02 0.70 16 11 C -0.13 -1.30 6.08 -26.61 -0.16 -1.46 16 12 C -0.11 -1.35 5.17 -26.69 -0.14 -1.49 16 13 C -0.11 -1.74 2.38 -90.49 -0.22 -1.95 16 14 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 15 C 0.17 3.36 5.65 -4.04 -0.02 3.33 16 16 N -0.74 -19.19 5.37 -59.91 -0.32 -19.51 16 17 C -0.33 -9.65 9.99 -15.06 -0.15 -9.80 16 18 H 0.06 1.82 7.83 -52.49 -0.41 1.41 16 19 C -0.05 -1.36 5.50 -17.43 -0.10 -1.45 16 20 N -0.94 -30.10 13.70 55.49 0.76 -29.34 16 21 Si 1.08 26.57 29.92 -169.99 -5.09 21.49 16 22 H -0.30 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.30 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 25 C 0.12 2.02 5.52 -3.71 -0.02 2.00 16 26 N -0.26 -3.40 3.75 -63.88 -0.24 -3.64 16 27 C 0.08 0.89 10.97 59.85 0.66 1.55 16 28 N -0.28 -3.58 11.90 33.64 0.40 -3.18 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 35 H 0.06 0.33 7.37 -51.93 -0.38 -0.05 16 36 H 0.17 1.39 5.34 -52.49 -0.28 1.11 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.11 1.00 3.34 -51.93 -0.17 0.83 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.37 9.85 5.72 -40.82 -0.23 9.62 16 46 H 0.26 8.15 6.77 -40.82 -0.28 7.87 16 47 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 48 H 0.10 2.06 6.20 -51.93 -0.32 1.74 16 49 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 50 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 51 H 0.11 1.41 6.44 -51.93 -0.33 1.07 16 LS Contribution 397.08 15.07 5.98 5.98 Total: -1.00 -35.55 397.08 -8.60 -44.15 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: -8.40 Total: 7.49 kcal Atomic # 6 Polarization: -3.18 SS G_CDS: -1.26 Total: -4.44 kcal Atomic # 7 Polarization: -64.57 SS G_CDS: 0.08 Total: -64.49 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: 0.08 Total: -10.18 kcal Atomic # 14 Polarization: 26.57 SS G_CDS: -5.09 Total: 21.49 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -35.55 -8.60 -44.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661827732.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.679 kcal (2) G-P(sol) polarization free energy of solvation -35.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds