Wall clock time and date at job start Tue Mar 31 2020 19:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.46914 * 2 1 4 4 C 1.50694 * 109.47324 * 120.00446 * 2 1 3 5 5 C 1.39678 * 126.06844 * 275.28425 * 4 2 1 6 6 C 1.38406 * 105.35644 * 180.09254 * 5 4 2 7 7 C 1.47160 * 126.88067 * 179.91667 * 6 5 4 8 8 O 1.21633 * 120.00239 * 205.52680 * 7 6 5 9 9 N 1.34776 * 120.00413 * 25.52886 * 7 6 5 10 10 C 1.46926 * 120.62794 * 0.59198 * 9 7 6 11 11 C 1.53187 * 108.77518 * 126.41735 * 10 9 7 12 12 C 1.53040 * 109.31330 * 54.63822 * 11 10 9 13 13 C 1.53049 * 109.53517 * 298.63213 * 12 11 10 14 14 H 1.08994 * 109.52547 * 301.39997 * 13 12 11 15 15 C 1.53003 * 109.49627 * 181.31522 * 13 12 11 16 16 N 1.46500 * 109.46887 * 175.16576 * 15 13 12 17 17 C 1.36935 * 119.99713 * 180.02562 * 16 15 13 18 18 H 1.07999 * 120.00282 * 359.97438 * 17 16 15 19 19 C 1.38807 * 119.99989 * 179.97438 * 17 16 15 20 20 N 1.31619 * 119.99785 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00328 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47178 * 270.00142 * 21 19 17 23 23 H 1.48501 * 109.46949 * 29.99951 * 21 19 17 24 24 H 1.48499 * 109.47355 * 149.99905 * 21 19 17 25 25 C 1.46926 * 120.63315 * 180.62282 * 9 7 6 26 26 N 1.36593 * 106.23282 * 359.65225 * 6 5 4 27 27 C 1.46508 * 125.19061 * 180.24919 * 26 6 5 28 28 N 1.28448 * 109.62404 * 0.22510 * 26 6 5 29 29 H 1.08995 * 109.46739 * 299.99433 * 1 2 3 30 30 H 1.08998 * 109.47358 * 59.99679 * 1 2 3 31 31 H 1.09000 * 109.47286 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.46739 * 240.00567 * 2 1 3 33 33 H 1.09001 * 109.46899 * 179.97438 * 3 2 1 34 34 H 1.08998 * 109.47370 * 300.00313 * 3 2 1 35 35 H 1.09001 * 109.46640 * 60.00389 * 3 2 1 36 36 H 1.07996 * 127.31969 * 359.96928 * 5 4 2 37 37 H 1.09002 * 109.58978 * 246.20464 * 10 9 7 38 38 H 1.09003 * 109.58932 * 6.48670 * 10 9 7 39 39 H 1.08999 * 109.50139 * 174.58534 * 11 10 9 40 40 H 1.08998 * 109.49712 * 294.65120 * 11 10 9 41 41 H 1.08997 * 109.45983 * 178.61735 * 12 11 10 42 42 H 1.08999 * 109.46386 * 58.65725 * 12 11 10 43 43 H 1.09000 * 109.47030 * 55.16591 * 15 13 12 44 44 H 1.08995 * 109.47044 * 295.16789 * 15 13 12 45 45 H 0.96999 * 120.00094 * 359.97438 * 16 15 13 46 46 H 0.97001 * 120.00493 * 359.97438 * 20 19 17 47 47 H 1.09002 * 109.58866 * 113.79468 * 25 9 7 48 48 H 1.08998 * 109.58907 * 353.36970 * 25 9 7 49 49 H 1.09006 * 109.47089 * 84.40830 * 27 26 6 50 50 H 1.08997 * 109.46944 * 204.40653 * 27 26 6 51 51 H 1.08999 * 109.46580 * 324.41155 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2303 5 6 2.2085 -0.1419 2.4940 6 6 2.6846 -1.1663 3.2937 7 6 3.0328 -1.0835 4.7211 8 8 3.8426 -1.8571 5.1955 9 7 2.4543 -0.1504 5.5028 10 6 1.4647 0.7828 4.9472 11 6 0.1917 0.7149 5.7967 12 6 0.5469 0.9747 7.2624 13 6 1.5137 -0.1051 7.7540 14 1 1.0526 -1.0861 7.6401 15 6 1.8425 0.1367 9.2285 16 7 2.6749 -0.9599 9.7294 17 6 3.0955 -0.9600 11.0326 18 1 2.8141 -0.1515 11.6910 19 6 3.8837 -1.9993 11.5074 20 7 4.2263 -2.9849 10.7051 21 14 4.4582 -1.9992 13.2848 22 1 5.7622 -1.2956 13.3835 23 1 3.4547 -1.3025 14.1292 24 1 4.6141 -3.3992 13.7548 25 6 2.8017 -0.0465 6.9266 26 7 2.7609 -2.2711 2.4940 27 6 3.2127 -3.5962 2.9255 28 7 2.3757 -1.9710 1.3059 29 1 -0.3632 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5137 -0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6767 1.9563 0.8901 36 1 2.0162 0.8802 2.7846 37 1 1.8652 1.7963 4.9695 38 1 1.2356 0.5030 3.9189 39 1 -0.5150 1.4707 5.4542 40 1 -0.2576 -0.2735 5.7004 41 1 -0.3607 0.9513 7.8656 42 1 1.0183 1.9532 7.3540 43 1 0.9180 0.1833 9.8040 44 1 2.3820 1.0783 9.3308 45 1 2.9273 -1.6863 9.1382 46 1 3.9277 -2.9852 9.7822 47 1 3.3113 0.8994 7.1104 48 1 3.4530 -0.8749 7.2053 49 1 2.3787 -4.1362 3.3740 50 1 3.5842 -4.1517 2.0644 51 1 4.0112 -3.4866 3.6593 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661827732.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:48 Heat of formation + Delta-G solvation = 32.319245 kcal Electronic energy + Delta-G solvation = -29836.842195 eV Core-core repulsion = 25965.341685 eV Total energy + Delta-G solvation = -3871.500510 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.77319 -41.19215 -38.97597 -37.08890 -36.76867 -34.91019 -33.36631 -33.12095 -32.42433 -30.98900 -28.09877 -27.77045 -27.15758 -26.86937 -25.08785 -24.07220 -23.33321 -22.80269 -21.71476 -20.96913 -19.71731 -19.36902 -18.36616 -17.78694 -17.38378 -17.10127 -16.59964 -16.22314 -16.02887 -15.87054 -15.55657 -15.36461 -15.15080 -15.00650 -14.80509 -14.27501 -14.16980 -14.11887 -14.00139 -13.86290 -13.59779 -13.44384 -13.02258 -12.82409 -12.73016 -12.55218 -12.31104 -12.21026 -12.10379 -11.98766 -11.91448 -11.88717 -11.72934 -11.58808 -11.39599 -11.26058 -11.10038 -10.97397 -10.24813 -9.89446 -9.77848 -9.14840 -8.43218 -5.37305 0.13524 1.18115 1.48236 1.55447 1.67428 1.81232 1.88912 1.94939 2.69679 3.16968 3.35116 3.37519 3.57839 3.77416 3.79076 3.84884 4.00287 4.02739 4.10731 4.13913 4.16847 4.24663 4.33665 4.35714 4.39849 4.48522 4.52715 4.57131 4.64911 4.68188 4.71127 4.80522 4.83499 4.92965 4.93798 5.03951 5.07012 5.10946 5.13411 5.23787 5.25058 5.36074 5.40726 5.42051 5.48780 5.54068 5.55656 5.65082 6.15835 6.43567 6.82802 7.00447 7.05088 7.95130 8.07711 9.08074 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.018708 B = 0.002702 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.299633 B =10360.003123 C =11429.575885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.009 4.009 3 C -0.142 4.142 4 C 0.032 3.968 5 C -0.180 4.180 6 C -0.048 4.048 7 C 0.577 3.423 8 O -0.582 6.582 9 N -0.586 5.586 10 C 0.066 3.934 11 C -0.125 4.125 12 C -0.107 4.107 13 C -0.095 4.095 14 H 0.049 0.951 15 C 0.164 3.836 16 N -0.760 5.760 17 C -0.334 4.334 18 H 0.071 0.929 19 C -0.110 4.110 20 N -0.976 5.976 21 Si 1.133 2.867 22 H -0.284 1.284 23 H -0.269 1.269 24 H -0.294 1.294 25 C 0.130 3.870 26 N -0.270 5.270 27 C 0.080 3.920 28 N -0.296 5.296 29 H 0.065 0.935 30 H 0.081 0.919 31 H 0.041 0.959 32 H 0.080 0.920 33 H 0.048 0.952 34 H 0.080 0.920 35 H 0.071 0.929 36 H 0.202 0.798 37 H 0.101 0.899 38 H 0.127 0.873 39 H 0.117 0.883 40 H 0.051 0.949 41 H 0.075 0.925 42 H 0.083 0.917 43 H 0.026 0.974 44 H 0.029 0.971 45 H 0.357 0.643 46 H 0.240 0.760 47 H 0.080 0.920 48 H 0.051 0.949 49 H 0.089 0.911 50 H 0.117 0.883 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.281 12.804 -24.537 29.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.029 4.029 3 C -0.200 4.200 4 C -0.125 4.125 5 C -0.208 4.208 6 C -0.176 4.176 7 C 0.365 3.635 8 O -0.463 6.463 9 N -0.317 5.317 10 C -0.054 4.054 11 C -0.163 4.163 12 C -0.144 4.144 13 C -0.114 4.114 14 H 0.067 0.933 15 C 0.037 3.963 16 N -0.405 5.405 17 C -0.465 4.465 18 H 0.089 0.911 19 C -0.300 4.300 20 N -0.624 5.624 21 Si 0.957 3.043 22 H -0.211 1.211 23 H -0.194 1.194 24 H -0.221 1.221 25 C 0.008 3.992 26 N -0.057 5.057 27 C -0.060 4.060 28 N -0.129 5.129 29 H 0.084 0.916 30 H 0.099 0.901 31 H 0.060 0.940 32 H 0.098 0.902 33 H 0.067 0.933 34 H 0.099 0.901 35 H 0.090 0.910 36 H 0.219 0.781 37 H 0.119 0.881 38 H 0.144 0.856 39 H 0.135 0.865 40 H 0.070 0.930 41 H 0.094 0.906 42 H 0.102 0.898 43 H 0.044 0.956 44 H 0.047 0.953 45 H 0.189 0.811 46 H 0.050 0.950 47 H 0.098 0.902 48 H 0.070 0.930 49 H 0.107 0.893 50 H 0.136 0.864 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -9.934 10.645 -23.558 27.694 hybrid contribution -0.336 0.351 -0.377 0.615 sum -10.270 10.996 -23.935 28.271 Atomic orbital electron populations 1.21805 0.92747 1.01661 1.03439 1.19577 0.96475 0.95658 0.91213 1.21842 1.00867 0.93489 1.03752 1.22578 1.03000 0.89605 0.97320 1.22649 1.05429 1.00621 0.92079 1.21314 1.12348 0.90775 0.93163 1.17406 0.80784 0.80644 0.84651 1.90825 1.36360 1.43507 1.75591 1.47896 1.41523 1.33166 1.09104 1.23069 0.88028 0.93722 1.00604 1.21902 0.97189 1.03166 0.94056 1.21530 0.98506 0.97656 0.96752 1.21566 0.95896 1.00262 0.93716 0.93280 1.20779 0.93132 0.90329 0.92031 1.42705 1.62147 1.25647 1.09988 1.20447 1.28913 1.08059 0.89109 0.91095 1.27353 0.99060 0.93528 1.10086 1.70961 1.50304 1.34742 1.06420 0.82569 0.76235 0.75669 0.69784 1.21064 1.19364 1.22060 1.21471 0.97015 1.02103 0.78625 1.45717 1.44965 1.09986 1.05050 1.22414 1.02006 0.78597 1.02952 1.73126 1.17844 1.19195 1.02708 0.91551 0.90054 0.94017 0.90202 0.93284 0.90100 0.90984 0.78111 0.88090 0.85567 0.86500 0.92982 0.90612 0.89812 0.95618 0.95328 0.81141 0.94953 0.90219 0.93016 0.89262 0.86417 0.89062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.18 71.98 0.66 -0.74 16 2 C -0.01 -0.12 3.38 -11.54 -0.04 -0.16 16 3 C -0.14 -1.23 8.79 71.98 0.63 -0.60 16 4 C 0.03 0.63 6.12 43.05 0.26 0.90 16 5 C -0.18 -3.48 7.86 22.66 0.18 -3.30 16 6 C -0.05 -1.28 6.59 40.79 0.27 -1.02 16 7 C 0.58 18.97 7.57 86.59 0.66 19.63 16 8 O -0.58 -24.54 14.51 -4.13 -0.06 -24.60 16 9 N -0.59 -16.32 2.97 -823.08 -2.45 -18.76 16 10 C 0.07 1.10 5.46 86.36 0.47 1.57 16 11 C -0.13 -1.98 6.08 30.67 0.19 -1.80 16 12 C -0.11 -2.23 5.17 30.62 0.16 -2.07 16 13 C -0.09 -3.04 2.38 -10.71 -0.03 -3.07 16 14 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 15 C 0.16 6.62 5.65 86.38 0.49 7.11 16 16 N -0.76 -40.54 5.37 -343.46 -1.85 -42.38 16 17 C -0.33 -19.58 9.99 84.03 0.84 -18.74 16 18 H 0.07 3.99 7.83 -2.91 -0.02 3.97 16 19 C -0.11 -6.67 5.50 84.86 0.47 -6.20 16 20 N -0.98 -64.80 13.70 21.65 0.30 -64.51 16 21 Si 1.13 53.85 29.92 68.60 2.05 55.90 16 22 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 23 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 24 H -0.29 -14.17 7.11 99.48 0.71 -13.47 16 25 C 0.13 4.42 5.52 86.36 0.48 4.90 16 26 N -0.27 -7.29 3.75 -356.01 -1.33 -8.63 16 27 C 0.08 1.90 10.97 127.77 1.40 3.31 16 28 N -0.30 -7.46 11.90 -47.49 -0.57 -8.02 16 29 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 35 H 0.07 0.46 7.37 -2.39 -0.02 0.44 16 36 H 0.20 2.43 5.34 -2.91 -0.02 2.42 16 37 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.13 1.77 3.34 -2.39 -0.01 1.76 16 39 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.36 20.40 5.72 -92.71 -0.53 19.87 16 46 H 0.24 16.22 6.77 -92.71 -0.63 15.59 16 47 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 48 H 0.05 2.29 6.20 -2.39 -0.01 2.27 16 49 H 0.09 1.95 8.14 -2.38 -0.02 1.93 16 50 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 51 H 0.09 2.57 6.44 -2.39 -0.02 2.56 16 Total: -1.00 -82.29 397.08 3.72 -78.57 By element: Atomic # 1 Polarization: 32.19 SS G_CDS: 0.54 Total: 32.73 kcal Atomic # 6 Polarization: -7.37 SS G_CDS: 7.08 Total: -0.29 kcal Atomic # 7 Polarization: -136.41 SS G_CDS: -5.90 Total: -142.30 kcal Atomic # 8 Polarization: -24.54 SS G_CDS: -0.06 Total: -24.60 kcal Atomic # 14 Polarization: 53.85 SS G_CDS: 2.05 Total: 55.90 kcal Total: -82.29 3.72 -78.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661827732.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.890 kcal (2) G-P(sol) polarization free energy of solvation -82.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds