Wall clock time and date at job start Tue Mar 31 2020 19:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.47000 * 2 1 4 4 C 1.50695 * 109.46974 * 180.02562 * 3 2 1 5 5 C 1.35370 * 126.38569 * 275.30427 * 4 3 2 6 6 C 1.41496 * 105.50363 * 180.11971 * 5 4 3 7 7 C 1.47717 * 126.51975 * 179.89868 * 6 5 4 8 8 O 1.21576 * 119.99734 * 354.14044 * 7 6 5 9 9 N 1.34772 * 120.00077 * 173.85910 * 7 6 5 10 10 C 1.46495 * 120.00107 * 5.39565 * 9 7 6 11 11 C 1.53001 * 109.47355 * 83.63151 * 10 9 7 12 12 C 1.52998 * 109.47166 * 179.97438 * 11 10 9 13 13 C 1.46498 * 119.99777 * 185.39046 * 9 7 6 14 14 H 1.09005 * 110.63997 * 194.05670 * 13 9 7 15 15 C 1.55156 * 110.72019 * 70.91204 * 13 9 7 16 16 C 1.55379 * 101.36699 * 277.03893 * 15 13 9 17 17 N 1.47428 * 104.87969 * 323.02028 * 16 15 13 18 18 C 1.36929 * 125.64991 * 204.10008 * 17 16 15 19 19 H 1.08000 * 120.00035 * 180.02562 * 18 17 16 20 20 C 1.38812 * 120.00379 * 0.03258 * 18 17 16 21 21 N 1.31622 * 119.99867 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00314 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47282 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47201 * 119.99814 * 22 20 18 25 25 H 1.48496 * 109.47077 * 240.00160 * 22 20 18 26 26 C 1.47022 * 108.70141 * 24.12611 * 17 16 15 27 27 N 1.31805 * 106.96514 * 359.64374 * 6 5 4 28 28 N 1.28468 * 110.07453 * 0.22194 * 27 6 5 29 29 H 0.96998 * 124.88366 * 180.02562 * 28 27 6 30 30 H 1.08999 * 109.46991 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47411 * 300.00183 * 1 2 3 32 32 H 1.09001 * 109.46668 * 60.00414 * 1 2 3 33 33 H 1.09002 * 109.47010 * 240.00268 * 2 1 3 34 34 H 1.08998 * 109.46996 * 120.00278 * 2 1 3 35 35 H 1.09001 * 109.46880 * 59.99738 * 3 2 1 36 36 H 1.08995 * 109.47030 * 299.99770 * 3 2 1 37 37 H 1.08006 * 127.24545 * 0.02625 * 5 4 3 38 38 H 1.09003 * 109.47147 * 203.63331 * 10 9 7 39 39 H 1.09001 * 109.47290 * 323.63420 * 10 9 7 40 40 H 1.09003 * 109.47140 * 300.00185 * 11 10 9 41 41 H 1.09002 * 109.46890 * 60.00428 * 11 10 9 42 42 H 1.08997 * 109.47057 * 180.02562 * 12 11 10 43 43 H 1.09003 * 109.47294 * 300.00154 * 12 11 10 44 44 H 1.09001 * 109.47333 * 60.00360 * 12 11 10 45 45 H 1.08996 * 111.00165 * 35.21380 * 15 13 9 46 46 H 1.09002 * 111.00343 * 159.05977 * 15 13 9 47 47 H 1.09002 * 110.34900 * 204.16559 * 16 15 13 48 48 H 1.09003 * 110.44145 * 81.91753 * 16 15 13 49 49 H 0.96997 * 120.00207 * 180.02562 * 21 20 18 50 50 H 1.08992 * 109.88570 * 239.53012 * 26 17 16 51 51 H 1.08996 * 109.88350 * 118.35674 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.3505 1.3416 1.0841 6 6 5.6723 1.3911 0.5817 7 6 6.9171 1.3206 1.3738 8 8 6.8651 1.3160 2.5885 9 7 8.1100 1.2557 0.7501 10 6 8.1814 1.3740 -0.7083 11 6 8.1885 2.8529 -1.1004 12 6 8.2638 2.9764 -2.6235 13 6 9.3353 1.0669 1.5306 14 1 10.2147 1.2817 0.9232 15 6 9.4035 -0.3724 2.1058 16 6 8.5314 -0.2329 3.3842 17 7 8.8359 1.1122 3.9053 18 6 8.6932 1.5153 5.2061 19 1 8.9441 2.5271 5.4885 20 6 8.2260 0.6236 6.1618 21 7 7.9208 -0.6097 5.8178 22 14 8.0306 1.1738 7.9362 23 1 8.4389 2.5961 8.0613 24 1 6.6108 1.0280 8.3462 25 1 8.8874 0.3346 8.8119 26 6 9.3176 1.9492 2.7967 27 7 5.5817 1.5066 -0.7282 28 7 4.3476 1.5379 -1.0838 29 1 4.0359 1.6182 -1.9988 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 1.6766 1.9563 0.8900 36 1 1.6767 1.9563 -0.8900 37 1 4.0465 1.2453 2.1161 38 1 9.0944 0.8986 -1.0672 39 1 7.3166 0.8838 -1.1555 40 1 7.2756 3.3283 -0.7415 41 1 9.0534 3.3431 -0.6533 42 1 8.2693 4.0300 -2.9027 43 1 9.1769 2.5011 -2.9819 44 1 7.3992 2.4862 -3.0710 45 1 8.9711 -1.0919 1.4105 46 1 10.4283 -0.6438 2.3592 47 1 8.8056 -0.9938 4.1150 48 1 7.4735 -0.3122 3.1339 49 1 7.5940 -1.2327 6.4856 50 1 10.3240 2.3075 3.0129 51 1 8.6445 2.7939 2.6504 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001664677432.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:19 Heat of formation + Delta-G solvation = 92.541347 kcal Electronic energy + Delta-G solvation = -30679.994998 eV Core-core repulsion = 26811.105914 eV Total energy + Delta-G solvation = -3868.889084 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.57448 -39.63055 -36.10357 -35.78255 -35.38175 -32.76729 -31.86049 -31.19473 -30.88657 -28.84375 -27.26389 -26.57488 -25.78082 -24.42285 -23.45994 -22.14533 -21.48769 -20.91148 -20.33290 -19.79135 -17.92353 -17.72806 -16.64399 -16.34771 -15.64919 -15.42336 -15.32495 -14.81775 -14.41261 -14.28598 -14.01047 -13.69574 -13.56221 -13.53687 -13.19330 -13.08462 -12.81344 -12.45896 -12.12859 -11.95349 -11.82162 -11.67620 -11.56423 -11.46940 -11.32594 -11.30213 -11.01748 -10.77911 -10.71030 -10.68346 -10.51850 -10.30578 -9.87302 -9.77778 -9.54313 -9.28579 -9.06441 -8.94470 -8.82854 -8.36556 -7.71835 -6.38298 -5.31668 -2.67589 1.84538 2.32159 2.90177 3.52894 3.57323 3.62009 3.64617 4.00490 4.42637 4.59741 4.72319 4.75837 4.78001 5.03015 5.12092 5.18233 5.19745 5.32821 5.43367 5.50964 5.51411 5.56396 5.63458 5.68730 5.73898 5.79224 5.81855 5.84681 5.90644 5.94502 5.98173 6.01115 6.05978 6.11226 6.16310 6.28198 6.40238 6.50312 6.62482 6.69815 6.76911 6.90309 6.96724 7.07300 7.42050 7.88163 7.93986 8.06896 8.11100 8.21162 8.70396 9.02728 9.56651 10.18548 10.86539 11.72195 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.009369 B = 0.004260 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2987.983232 B = 6571.455570 C = 8872.028206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.048 4.048 4 C 0.010 3.990 5 C -0.174 4.174 6 C 0.009 3.991 7 C 0.560 3.440 8 O -0.438 6.438 9 N -0.600 5.600 10 C 0.108 3.892 11 C -0.132 4.132 12 C -0.142 4.142 13 C 0.137 3.863 14 H 0.082 0.918 15 C -0.161 4.161 16 C 0.158 3.842 17 N -0.577 5.577 18 C -0.197 4.197 19 H 0.070 0.930 20 C -0.016 4.016 21 N -0.921 5.921 22 Si 0.906 3.094 23 H -0.283 1.283 24 H -0.294 1.294 25 H -0.295 1.295 26 C 0.140 3.860 27 N -0.262 5.262 28 N -0.392 5.392 29 H 0.438 0.562 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.060 0.940 34 H 0.072 0.928 35 H 0.090 0.910 36 H 0.072 0.928 37 H 0.160 0.840 38 H 0.065 0.935 39 H 0.100 0.900 40 H 0.062 0.938 41 H 0.056 0.944 42 H 0.048 0.952 43 H 0.050 0.950 44 H 0.054 0.946 45 H 0.055 0.945 46 H 0.064 0.936 47 H 0.093 0.907 48 H 0.036 0.964 49 H 0.245 0.755 50 H 0.019 0.981 51 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.369 3.016 -21.024 23.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.087 4.087 4 C -0.116 4.116 5 C -0.202 4.202 6 C -0.152 4.152 7 C 0.344 3.656 8 O -0.305 6.305 9 N -0.335 5.335 10 C -0.016 4.016 11 C -0.170 4.170 12 C -0.200 4.200 13 C 0.033 3.967 14 H 0.100 0.900 15 C -0.201 4.201 16 C 0.033 3.967 17 N -0.302 5.302 18 C -0.326 4.326 19 H 0.088 0.912 20 C -0.210 4.210 21 N -0.572 5.572 22 Si 0.738 3.262 23 H -0.209 1.209 24 H -0.222 1.222 25 H -0.222 1.222 26 C 0.013 3.987 27 N -0.098 5.098 28 N -0.105 5.105 29 H 0.281 0.719 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.108 0.892 36 H 0.090 0.910 37 H 0.177 0.823 38 H 0.084 0.916 39 H 0.117 0.883 40 H 0.081 0.919 41 H 0.075 0.925 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.073 0.927 45 H 0.074 0.926 46 H 0.083 0.917 47 H 0.111 0.889 48 H 0.054 0.946 49 H 0.056 0.944 50 H 0.037 0.963 51 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -8.785 3.032 -20.995 22.960 hybrid contribution -0.839 0.372 0.888 1.277 sum -9.624 3.403 -20.107 22.550 Atomic orbital electron populations 1.21778 0.95390 1.01949 1.01873 1.21548 0.95828 0.95642 1.02948 1.20178 0.86693 0.98121 1.03715 1.21324 0.94723 1.07998 0.87520 1.21560 0.90736 1.08048 0.99811 1.22355 0.95795 1.07525 0.89499 1.17104 0.81393 0.80013 0.87097 1.91233 1.85202 1.43145 1.10902 1.47669 1.05867 1.73437 1.06553 1.21837 1.03077 0.96333 0.80306 1.21836 1.02024 0.97518 0.95667 1.21629 1.01406 1.00993 0.95966 1.22084 0.84748 0.97343 0.92499 0.90037 1.23617 1.01444 0.94412 1.00629 1.22149 0.95158 0.88814 0.90535 1.44150 1.75457 1.07809 1.02790 1.19026 1.35086 0.95837 0.82682 0.91166 1.24647 1.02504 0.96252 0.97626 1.69846 1.51941 1.04164 1.31235 0.86092 0.77161 0.77320 0.85587 1.20878 1.22173 1.22230 1.21375 0.96085 0.93695 0.87557 1.73730 1.00293 1.20530 1.15230 1.43416 1.03469 1.54243 1.09388 0.71921 0.92494 0.92366 0.92853 0.92118 0.90954 0.89160 0.90977 0.82253 0.91608 0.88259 0.91922 0.92485 0.93247 0.93066 0.92731 0.92625 0.91725 0.88889 0.94638 0.94443 0.96319 0.96047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.91 37.16 0.37 -0.60 16 2 C -0.12 -0.93 5.92 -26.73 -0.16 -1.09 16 3 C -0.05 -0.37 5.77 -27.88 -0.16 -0.53 16 4 C 0.01 0.11 6.48 -82.21 -0.53 -0.42 16 5 C -0.17 -2.69 10.73 -39.36 -0.42 -3.11 16 6 C 0.01 0.16 6.69 -82.77 -0.55 -0.39 16 7 C 0.56 11.43 6.71 -12.39 -0.08 11.35 16 8 O -0.44 -11.16 10.37 5.30 0.05 -11.10 16 9 N -0.60 -10.65 2.52 -165.17 -0.42 -11.07 16 10 C 0.11 1.47 4.97 -4.04 -0.02 1.45 16 11 C -0.13 -1.63 5.81 -26.73 -0.16 -1.79 16 12 C -0.14 -1.36 9.91 37.16 0.37 -0.99 16 13 C 0.14 2.60 3.65 -66.09 -0.24 2.36 16 14 H 0.08 1.30 7.94 -51.93 -0.41 0.89 16 15 C -0.16 -3.35 6.73 -24.33 -0.16 -3.52 16 16 C 0.16 4.21 4.93 -2.27 -0.01 4.20 16 17 N -0.58 -16.06 2.24 -169.77 -0.38 -16.44 16 18 C -0.20 -5.97 10.27 -15.06 -0.15 -6.12 16 19 H 0.07 2.08 7.83 -52.49 -0.41 1.67 16 20 C -0.02 -0.48 5.49 -17.43 -0.10 -0.58 16 21 N -0.92 -28.90 10.09 55.49 0.56 -28.34 16 22 Si 0.91 23.75 29.55 -169.99 -5.02 18.73 16 23 H -0.28 -7.22 7.11 56.52 0.40 -6.82 16 24 H -0.29 -7.78 7.11 56.52 0.40 -7.38 16 25 H -0.29 -7.68 7.11 56.52 0.40 -7.28 16 26 C 0.14 3.26 5.99 -3.06 -0.02 3.24 16 27 N -0.26 -3.52 7.68 33.42 0.26 -3.26 16 28 N -0.39 -4.01 6.83 33.50 0.23 -3.78 16 29 H 0.44 2.74 8.96 -190.44 -1.71 1.03 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.16 2.61 8.06 -52.48 -0.42 2.19 16 38 H 0.07 0.80 7.95 -51.93 -0.41 0.38 16 39 H 0.10 1.35 5.24 -51.93 -0.27 1.08 16 40 H 0.06 0.89 7.24 -51.93 -0.38 0.51 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 46 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 47 H 0.09 2.78 5.87 -51.93 -0.30 2.48 16 48 H 0.04 1.05 5.48 -51.93 -0.28 0.77 16 49 H 0.24 7.44 8.31 -40.82 -0.34 7.10 16 50 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 51 H 0.02 0.53 7.18 -51.93 -0.37 0.16 16 LS Contribution 394.63 15.07 5.95 5.95 Total: -1.00 -36.01 394.63 -10.84 -46.85 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -10.03 Total: -1.00 kcal Atomic # 6 Polarization: 5.50 SS G_CDS: -2.03 Total: 3.46 kcal Atomic # 7 Polarization: -63.14 SS G_CDS: 0.25 Total: -62.89 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: 0.05 Total: -11.10 kcal Atomic # 14 Polarization: 23.75 SS G_CDS: -5.02 Total: 18.73 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -36.01 -10.84 -46.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664677432.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.393 kcal (2) G-P(sol) polarization free energy of solvation -36.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds