Wall clock time and date at job start Tue Mar 31 2020 19:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.47000 * 2 1 4 4 C 1.50695 * 109.46974 * 180.02562 * 3 2 1 5 5 C 1.35370 * 126.38569 * 275.30427 * 4 3 2 6 6 C 1.41496 * 105.50363 * 180.11971 * 5 4 3 7 7 C 1.47717 * 126.51975 * 179.89868 * 6 5 4 8 8 O 1.21576 * 119.99734 * 354.14044 * 7 6 5 9 9 N 1.34772 * 120.00077 * 173.85910 * 7 6 5 10 10 C 1.46495 * 120.00107 * 5.39565 * 9 7 6 11 11 C 1.53001 * 109.47355 * 83.63151 * 10 9 7 12 12 C 1.52998 * 109.47166 * 179.97438 * 11 10 9 13 13 C 1.46498 * 119.99777 * 185.39046 * 9 7 6 14 14 H 1.09005 * 110.63997 * 194.05670 * 13 9 7 15 15 C 1.55156 * 110.72019 * 70.91204 * 13 9 7 16 16 C 1.55379 * 101.36699 * 277.03893 * 15 13 9 17 17 N 1.47428 * 104.87969 * 323.02028 * 16 15 13 18 18 C 1.36929 * 125.64991 * 204.10008 * 17 16 15 19 19 H 1.08000 * 120.00035 * 180.02562 * 18 17 16 20 20 C 1.38812 * 120.00379 * 0.03258 * 18 17 16 21 21 N 1.31622 * 119.99867 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00314 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47282 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47201 * 119.99814 * 22 20 18 25 25 H 1.48496 * 109.47077 * 240.00160 * 22 20 18 26 26 C 1.47022 * 108.70141 * 24.12611 * 17 16 15 27 27 N 1.31805 * 106.96514 * 359.64374 * 6 5 4 28 28 N 1.28468 * 110.07453 * 0.22194 * 27 6 5 29 29 H 0.96998 * 124.88366 * 180.02562 * 28 27 6 30 30 H 1.08999 * 109.46991 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47411 * 300.00183 * 1 2 3 32 32 H 1.09001 * 109.46668 * 60.00414 * 1 2 3 33 33 H 1.09002 * 109.47010 * 240.00268 * 2 1 3 34 34 H 1.08998 * 109.46996 * 120.00278 * 2 1 3 35 35 H 1.09001 * 109.46880 * 59.99738 * 3 2 1 36 36 H 1.08995 * 109.47030 * 299.99770 * 3 2 1 37 37 H 1.08006 * 127.24545 * 0.02625 * 5 4 3 38 38 H 1.09003 * 109.47147 * 203.63331 * 10 9 7 39 39 H 1.09001 * 109.47290 * 323.63420 * 10 9 7 40 40 H 1.09003 * 109.47140 * 300.00185 * 11 10 9 41 41 H 1.09002 * 109.46890 * 60.00428 * 11 10 9 42 42 H 1.08997 * 109.47057 * 180.02562 * 12 11 10 43 43 H 1.09003 * 109.47294 * 300.00154 * 12 11 10 44 44 H 1.09001 * 109.47333 * 60.00360 * 12 11 10 45 45 H 1.08996 * 111.00165 * 35.21380 * 15 13 9 46 46 H 1.09002 * 111.00343 * 159.05977 * 15 13 9 47 47 H 1.09002 * 110.34900 * 204.16559 * 16 15 13 48 48 H 1.09003 * 110.44145 * 81.91753 * 16 15 13 49 49 H 0.96997 * 120.00207 * 180.02562 * 21 20 18 50 50 H 1.08992 * 109.88570 * 239.53012 * 26 17 16 51 51 H 1.08996 * 109.88350 * 118.35674 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.3505 1.3416 1.0841 6 6 5.6723 1.3911 0.5817 7 6 6.9171 1.3206 1.3738 8 8 6.8651 1.3160 2.5885 9 7 8.1100 1.2557 0.7501 10 6 8.1814 1.3740 -0.7083 11 6 8.1885 2.8529 -1.1004 12 6 8.2638 2.9764 -2.6235 13 6 9.3353 1.0669 1.5306 14 1 10.2147 1.2817 0.9232 15 6 9.4035 -0.3724 2.1058 16 6 8.5314 -0.2329 3.3842 17 7 8.8359 1.1122 3.9053 18 6 8.6932 1.5153 5.2061 19 1 8.9441 2.5271 5.4885 20 6 8.2260 0.6236 6.1618 21 7 7.9208 -0.6097 5.8178 22 14 8.0306 1.1738 7.9362 23 1 8.4389 2.5961 8.0613 24 1 6.6108 1.0280 8.3462 25 1 8.8874 0.3346 8.8119 26 6 9.3176 1.9492 2.7967 27 7 5.5817 1.5066 -0.7282 28 7 4.3476 1.5379 -1.0838 29 1 4.0359 1.6182 -1.9988 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 1.6766 1.9563 0.8900 36 1 1.6767 1.9563 -0.8900 37 1 4.0465 1.2453 2.1161 38 1 9.0944 0.8986 -1.0672 39 1 7.3166 0.8838 -1.1555 40 1 7.2756 3.3283 -0.7415 41 1 9.0534 3.3431 -0.6533 42 1 8.2693 4.0300 -2.9027 43 1 9.1769 2.5011 -2.9819 44 1 7.3992 2.4862 -3.0710 45 1 8.9711 -1.0919 1.4105 46 1 10.4283 -0.6438 2.3592 47 1 8.8056 -0.9938 4.1150 48 1 7.4735 -0.3122 3.1339 49 1 7.5940 -1.2327 6.4856 50 1 10.3240 2.3075 3.0129 51 1 8.6445 2.7939 2.6504 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001664677432.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:17 Heat of formation + Delta-G solvation = 69.992750 kcal Electronic energy + Delta-G solvation = -30680.972778 eV Core-core repulsion = 26811.105914 eV Total energy + Delta-G solvation = -3869.866864 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.67040 -41.20129 -37.91015 -37.08397 -36.17436 -34.51579 -33.19409 -32.60341 -31.86290 -30.79348 -29.03129 -27.39749 -26.91879 -26.47118 -24.90381 -22.88740 -22.56339 -21.89781 -21.86485 -21.75834 -19.35418 -18.80102 -18.68116 -17.83078 -16.91658 -16.80406 -16.61817 -16.05619 -15.94946 -15.57434 -15.49616 -15.31176 -14.72456 -14.62736 -14.38262 -14.18854 -13.95859 -13.80637 -13.62049 -13.29293 -13.14539 -12.95393 -12.86539 -12.81629 -12.63298 -12.44115 -12.39547 -12.14216 -11.99052 -11.94007 -11.87906 -11.73064 -11.63206 -11.56644 -11.37018 -11.13065 -10.75956 -10.48966 -10.18753 -9.86747 -9.33278 -8.59818 -7.61602 -4.99925 0.66457 1.14884 1.43416 1.46728 1.56049 1.90293 2.26142 2.54570 2.57585 3.37620 3.44802 3.69101 3.84393 3.94361 3.97388 4.08277 4.16355 4.18098 4.26862 4.32830 4.35755 4.50400 4.53438 4.58673 4.63751 4.73589 4.76392 4.82947 4.89322 4.92929 4.96374 4.98242 5.03827 5.06598 5.11652 5.15929 5.22796 5.27655 5.32890 5.35472 5.38642 5.46031 5.52162 5.56712 5.89354 5.91756 6.03540 6.19300 6.46585 6.61449 6.94496 7.26558 7.52510 7.98111 8.63852 9.40171 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.009369 B = 0.004260 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2987.983232 B = 6571.455570 C = 8872.028206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.120 4.120 3 C -0.045 4.045 4 C 0.042 3.958 5 C -0.214 4.214 6 C -0.024 4.024 7 C 0.555 3.445 8 O -0.507 6.507 9 N -0.596 5.596 10 C 0.105 3.895 11 C -0.125 4.125 12 C -0.134 4.134 13 C 0.149 3.851 14 H 0.130 0.870 15 C -0.145 4.145 16 C 0.164 3.836 17 N -0.594 5.594 18 C -0.216 4.216 19 H 0.067 0.933 20 C -0.074 4.074 21 N -0.948 5.948 22 Si 0.974 3.026 23 H -0.270 1.270 24 H -0.298 1.298 25 H -0.288 1.288 26 C 0.137 3.863 27 N -0.244 5.244 28 N -0.365 5.365 29 H 0.461 0.539 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.046 0.954 35 H 0.090 0.910 36 H 0.109 0.891 37 H 0.133 0.867 38 H 0.093 0.907 39 H 0.103 0.897 40 H 0.039 0.961 41 H 0.050 0.950 42 H 0.055 0.945 43 H 0.065 0.935 44 H 0.062 0.938 45 H 0.072 0.928 46 H 0.079 0.921 47 H 0.053 0.947 48 H 0.002 0.998 49 H 0.239 0.761 50 H 0.031 0.969 51 H 0.000 1.000 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.600 3.838 -24.764 26.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.158 4.158 3 C -0.084 4.084 4 C -0.085 4.085 5 C -0.243 4.243 6 C -0.183 4.183 7 C 0.341 3.659 8 O -0.378 6.378 9 N -0.329 5.329 10 C -0.016 4.016 11 C -0.164 4.164 12 C -0.192 4.192 13 C 0.045 3.955 14 H 0.148 0.852 15 C -0.185 4.185 16 C 0.040 3.960 17 N -0.318 5.318 18 C -0.346 4.346 19 H 0.085 0.915 20 C -0.265 4.265 21 N -0.600 5.600 22 Si 0.804 3.196 23 H -0.195 1.195 24 H -0.226 1.226 25 H -0.215 1.215 26 C 0.011 3.989 27 N -0.081 5.081 28 N -0.082 5.082 29 H 0.309 0.691 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.065 0.935 35 H 0.109 0.891 36 H 0.127 0.873 37 H 0.151 0.849 38 H 0.111 0.889 39 H 0.120 0.880 40 H 0.058 0.942 41 H 0.069 0.931 42 H 0.074 0.926 43 H 0.084 0.916 44 H 0.081 0.919 45 H 0.091 0.909 46 H 0.098 0.902 47 H 0.071 0.929 48 H 0.019 0.981 49 H 0.049 0.951 50 H 0.048 0.952 51 H 0.018 0.982 Dipole moment (debyes) X Y Z Total from point charges -8.991 3.877 -24.834 26.694 hybrid contribution -0.871 0.163 1.933 2.126 sum -9.862 4.040 -22.901 25.260 Atomic orbital electron populations 1.21754 0.94011 1.02253 1.02667 1.21512 0.96974 0.95209 1.02096 1.20344 0.83793 0.98677 1.05575 1.21575 0.96062 1.04674 0.86150 1.21528 0.91480 1.11081 1.00166 1.21925 0.94860 1.10795 0.90734 1.17626 0.82999 0.78518 0.86733 1.91197 1.86337 1.46530 1.13776 1.47800 1.04695 1.72150 1.08280 1.22124 1.04579 0.97552 0.77389 1.21752 1.00623 0.96136 0.97876 1.21574 1.02541 1.01802 0.93302 1.22038 0.87008 0.94799 0.91674 0.85224 1.23432 1.00896 0.96205 0.97945 1.21817 0.94546 0.87505 0.92166 1.44368 1.75295 1.09025 1.03101 1.19366 1.34992 0.95822 0.84424 0.91464 1.25491 1.02748 0.96453 1.01815 1.70144 1.52685 1.05081 1.32074 0.85047 0.76618 0.77547 0.80432 1.19498 1.22570 1.21507 1.21513 0.95480 0.93441 0.88487 1.73624 1.01655 1.19679 1.13165 1.43493 1.02468 1.51753 1.10452 0.69057 0.92510 0.92579 0.91040 0.91375 0.93512 0.89137 0.87267 0.84857 0.88888 0.87963 0.94183 0.93087 0.92593 0.91601 0.91924 0.90903 0.90245 0.92878 0.98061 0.95130 0.95159 0.98238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.91 71.98 0.71 -0.87 16 2 C -0.12 -1.65 5.92 30.60 0.18 -1.47 16 3 C -0.05 -0.60 5.77 29.85 0.17 -0.42 16 4 C 0.04 0.90 6.48 41.40 0.27 1.16 16 5 C -0.21 -6.99 10.73 22.41 0.24 -6.75 16 6 C -0.02 -0.83 6.69 42.46 0.28 -0.55 16 7 C 0.56 23.70 6.71 86.75 0.58 24.28 16 8 O -0.51 -27.83 10.37 -3.96 -0.04 -27.87 16 9 N -0.60 -20.86 2.52 -794.75 -2.00 -22.86 16 10 C 0.11 2.60 4.97 86.38 0.43 3.03 16 11 C -0.12 -2.81 5.81 30.59 0.18 -2.64 16 12 C -0.13 -2.07 9.91 71.98 0.71 -1.35 16 13 C 0.15 5.50 3.65 46.18 0.17 5.67 16 14 H 0.13 3.62 7.94 -2.38 -0.02 3.60 16 15 C -0.15 -5.99 6.73 32.15 0.22 -5.77 16 16 C 0.16 9.25 4.93 87.02 0.43 9.67 16 17 N -0.59 -34.59 2.24 -691.04 -1.55 -36.14 16 18 C -0.22 -13.69 10.27 84.03 0.86 -12.83 16 19 H 0.07 4.16 7.83 -2.91 -0.02 4.13 16 20 C -0.07 -4.66 5.49 84.86 0.47 -4.19 16 21 N -0.95 -62.80 10.09 21.65 0.22 -62.58 16 22 Si 0.97 50.80 29.55 68.60 2.03 52.83 16 23 H -0.27 -13.36 7.11 99.48 0.71 -12.65 16 24 H -0.30 -15.62 7.11 99.48 0.71 -14.91 16 25 H -0.29 -14.61 7.11 99.48 0.71 -13.90 16 26 C 0.14 6.52 5.99 86.73 0.52 7.04 16 27 N -0.24 -6.20 7.68 -48.18 -0.37 -6.57 16 28 N -0.36 -6.52 6.83 -47.93 -0.33 -6.84 16 29 H 0.46 3.80 8.96 -219.99 -1.97 1.83 16 30 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.13 4.95 8.06 -2.91 -0.02 4.93 16 38 H 0.09 1.84 7.95 -2.39 -0.02 1.82 16 39 H 0.10 2.51 5.24 -2.39 -0.01 2.50 16 40 H 0.04 1.08 7.24 -2.39 -0.02 1.07 16 41 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 46 H 0.08 3.04 8.14 -2.39 -0.02 3.02 16 47 H 0.05 3.38 5.87 -2.39 -0.01 3.37 16 48 H 0.00 0.11 5.48 -2.39 -0.01 0.10 16 49 H 0.24 15.32 8.31 -92.71 -0.77 14.55 16 50 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 51 H 0.00 -0.02 7.18 -2.39 -0.02 -0.03 16 Total: -1.00 -86.86 394.63 3.33 -83.53 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -1.05 Total: 12.49 kcal Atomic # 6 Polarization: 7.59 SS G_CDS: 6.42 Total: 14.01 kcal Atomic # 7 Polarization: -130.96 SS G_CDS: -4.03 Total: -134.99 kcal Atomic # 8 Polarization: -27.83 SS G_CDS: -0.04 Total: -27.87 kcal Atomic # 14 Polarization: 50.80 SS G_CDS: 2.03 Total: 52.83 kcal Total: -86.86 3.33 -83.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664677432.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.519 kcal (2) G-P(sol) polarization free energy of solvation -86.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds