Wall clock time and date at job start Tue Mar 31 2020 20:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36937 * 119.99563 * 2 1 4 4 H 1.08009 * 119.99831 * 199.96555 * 3 2 1 5 5 C 1.38804 * 120.00475 * 19.96266 * 3 2 1 6 6 N 1.31628 * 120.00010 * 12.39847 * 5 3 2 7 7 Si 1.86806 * 120.00206 * 192.40052 * 5 3 2 8 8 H 1.48504 * 109.47214 * 90.00019 * 7 5 3 9 9 H 1.48504 * 109.46797 * 209.99939 * 7 5 3 10 10 H 1.48500 * 109.47035 * 329.99722 * 7 5 3 11 11 C 1.46495 * 119.99903 * 180.02562 * 2 1 3 12 12 C 1.52999 * 109.47252 * 90.00246 * 11 2 1 13 13 H 1.08997 * 110.91360 * 308.89498 * 12 11 2 14 14 C 1.55161 * 111.00303 * 184.99933 * 12 11 2 15 15 C 1.54328 * 103.09903 * 206.32981 * 14 12 11 16 16 N 1.47489 * 107.03256 * 22.24193 * 15 14 12 17 17 C 1.34782 * 125.58674 * 181.00214 * 16 15 14 18 18 O 1.21602 * 119.99729 * 180.02562 * 17 16 15 19 19 C 1.47424 * 120.00249 * 0.02776 * 17 16 15 20 20 C 1.38049 * 126.41531 * 355.30326 * 19 17 16 21 21 N 1.34261 * 107.42034 * 179.87528 * 20 19 17 22 22 H 0.97000 * 125.75485 * 180.10923 * 21 20 19 23 23 N 1.39932 * 108.48693 * 0.39926 * 21 20 19 24 24 C 1.30444 * 108.90153 * 359.74817 * 23 21 20 25 25 C 1.50707 * 125.99369 * 179.97438 * 24 23 21 26 26 C 1.52995 * 109.47138 * 241.54473 * 25 24 23 27 27 C 1.53010 * 109.46702 * 1.54444 * 25 24 23 28 28 C 1.53001 * 109.47271 * 121.54019 * 25 24 23 29 29 C 1.47417 * 108.76483 * 1.02186 * 16 15 14 30 30 H 1.09000 * 109.46973 * 273.88765 * 1 2 3 31 31 H 1.09000 * 109.46935 * 33.88653 * 1 2 3 32 32 H 1.08999 * 109.47109 * 153.88934 * 1 2 3 33 33 H 0.96999 * 119.99780 * 179.97438 * 6 5 3 34 34 H 1.08996 * 109.47343 * 329.99500 * 11 2 1 35 35 H 1.09006 * 109.46824 * 209.99927 * 11 2 1 36 36 H 1.08993 * 110.71490 * 324.78134 * 14 12 11 37 37 H 1.09001 * 110.71806 * 87.87857 * 14 12 11 38 38 H 1.09004 * 109.88003 * 141.69459 * 15 14 12 39 39 H 1.08998 * 109.88473 * 262.86337 * 15 14 12 40 40 H 1.08004 * 126.28790 * 0.03539 * 20 19 17 41 41 H 1.09001 * 109.47133 * 68.49387 * 26 25 24 42 42 H 1.09000 * 109.46665 * 188.49093 * 26 25 24 43 43 H 1.08999 * 109.47432 * 308.49438 * 26 25 24 44 44 H 1.08997 * 109.46823 * 60.00138 * 27 25 24 45 45 H 1.09000 * 109.46731 * 180.02562 * 27 25 24 46 46 H 1.09002 * 109.46644 * 299.99629 * 27 25 24 47 47 H 1.09001 * 109.46713 * 50.98057 * 28 25 24 48 48 H 1.08995 * 109.47042 * 170.98519 * 28 25 24 49 49 H 1.09001 * 109.47290 * 290.98936 * 28 25 24 50 50 H 1.08997 * 110.37289 * 217.05624 * 29 16 15 51 51 H 1.09005 * 110.36775 * 94.72864 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1810 1.2141 -0.3194 5 6 1.5182 2.3519 0.4104 6 7 0.3559 2.2896 1.0251 7 14 2.3177 4.0096 0.0903 8 1 1.8727 4.5274 -1.2285 9 1 1.9213 4.9644 1.1564 10 1 3.7946 3.8547 0.0886 11 6 2.1975 -1.2687 -0.0006 12 6 2.4525 -1.7097 -1.4432 13 1 1.5298 -1.6960 -2.0232 14 6 3.1161 -3.1116 -1.4872 15 6 3.8877 -3.0916 -2.8236 16 7 4.1113 -1.6761 -3.1722 17 6 4.7357 -1.2305 -4.2804 18 8 4.8651 -0.0358 -4.4666 19 6 5.2619 -2.1914 -5.2669 20 6 5.2698 -3.5667 -5.1477 21 7 5.8324 -4.0634 -6.2610 22 1 5.9697 -5.0037 -6.4556 23 7 6.1931 -2.9956 -7.0903 24 6 5.8583 -1.8770 -6.5086 25 6 6.0710 -0.4920 -7.0633 26 6 6.9916 0.2958 -6.1292 27 6 6.7133 -0.5906 -8.4486 28 6 4.7239 0.2248 -7.1757 29 6 3.5399 -0.8299 -2.1090 30 1 -0.3633 0.0697 1.0253 31 1 -0.3633 0.8531 -0.5730 32 1 -0.3633 -0.9228 -0.4523 33 1 -0.0852 3.1044 1.3122 34 1 1.6085 -2.0285 0.5130 35 1 3.1499 -1.1385 0.5133 36 1 3.8004 -3.2406 -0.6487 37 1 2.3597 -3.8964 -1.4902 38 1 4.8433 -3.6031 -2.7076 39 1 3.2967 -3.5773 -3.6001 40 1 4.8905 -4.1382 -4.3135 41 1 7.9953 -0.1278 -6.1661 42 1 7.0252 1.3381 -6.4463 43 1 6.6102 0.2382 -5.1097 44 1 6.0573 -1.1518 -9.1140 45 1 6.8674 0.4111 -8.8496 46 1 7.6729 -1.1012 -8.3685 47 1 4.1948 0.1547 -6.2253 48 1 4.8898 1.2733 -7.4228 49 1 4.1275 -0.2432 -7.9589 50 1 3.0924 0.0670 -2.5372 51 1 4.3080 -0.5622 -1.3832 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001664848151.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:25 Heat of formation + Delta-G solvation = 70.041625 kcal Electronic energy + Delta-G solvation = -30284.403388 eV Core-core repulsion = 26414.538644 eV Total energy + Delta-G solvation = -3869.864745 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.74656 -39.47429 -37.68590 -36.50244 -35.29120 -32.45074 -31.16115 -30.87374 -30.26774 -28.72199 -27.10455 -27.02888 -25.83313 -25.70446 -23.94652 -22.76384 -21.77391 -21.25946 -20.04987 -19.60796 -18.27274 -17.58345 -16.82005 -16.55435 -15.81985 -15.30552 -15.11328 -15.01864 -14.76217 -14.36240 -14.26974 -13.76161 -13.52452 -13.33493 -13.16077 -12.99673 -12.80494 -12.47737 -12.35207 -12.12038 -11.87954 -11.75830 -11.38603 -11.30026 -11.16219 -11.13469 -11.11784 -10.93077 -10.76489 -10.65703 -10.48520 -10.38645 -10.34838 -10.13327 -9.85885 -9.72961 -9.66171 -9.42632 -8.93631 -8.48091 -8.33477 -6.74093 -5.67656 -3.11882 1.36506 2.08862 2.48618 3.22521 3.45445 3.50633 3.51784 3.53794 4.24870 4.40243 4.54093 4.70175 4.74118 4.84528 4.96904 5.09813 5.10717 5.20859 5.32851 5.38493 5.42526 5.47070 5.52675 5.71447 5.73754 5.79765 5.90640 5.95147 5.97736 5.99845 6.04496 6.08535 6.15098 6.15291 6.20683 6.38939 6.41186 6.50150 6.52899 6.63980 6.66414 6.74889 6.78836 6.89632 6.91684 7.38852 7.45552 7.75396 7.77825 7.87384 8.43129 8.47039 9.28776 9.92276 10.39069 11.37665 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.013807 B = 0.003389 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.526918 B = 8260.744559 C = 9848.338364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.165 3.835 2 N -0.603 5.603 3 C -0.251 4.251 4 H 0.071 0.929 5 C 0.001 3.999 6 N -0.911 5.911 7 Si 0.901 3.099 8 H -0.287 1.287 9 H -0.292 1.292 10 H -0.279 1.279 11 C 0.163 3.837 12 C -0.117 4.117 13 H 0.077 0.923 14 C -0.130 4.130 15 C 0.094 3.906 16 N -0.615 5.615 17 C 0.598 3.402 18 O -0.523 6.523 19 C -0.276 4.276 20 C 0.087 3.913 21 N -0.467 5.467 22 H 0.442 0.558 23 N -0.299 5.299 24 C 0.149 3.851 25 C 0.019 3.981 26 C -0.149 4.149 27 C -0.136 4.136 28 C -0.148 4.148 29 C 0.125 3.875 30 H 0.026 0.974 31 H 0.047 0.953 32 H -0.006 1.006 33 H 0.251 0.749 34 H 0.041 0.959 35 H 0.049 0.951 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.194 0.806 41 H 0.042 0.958 42 H 0.059 0.941 43 H 0.094 0.906 44 H 0.055 0.945 45 H 0.058 0.942 46 H 0.055 0.945 47 H 0.091 0.909 48 H 0.060 0.940 49 H 0.043 0.957 50 H 0.087 0.913 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.651 -16.087 -13.058 22.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.325 5.325 3 C -0.380 4.380 4 H 0.089 0.911 5 C -0.197 4.197 6 N -0.557 5.557 7 Si 0.731 3.269 8 H -0.214 1.214 9 H -0.219 1.219 10 H -0.204 1.204 11 C 0.034 3.966 12 C -0.139 4.139 13 H 0.095 0.905 14 C -0.169 4.169 15 C -0.029 4.029 16 N -0.349 5.349 17 C 0.388 3.612 18 O -0.402 6.402 19 C -0.291 4.291 20 C -0.065 4.065 21 N -0.171 5.171 22 H 0.286 0.714 23 N -0.120 5.120 24 C -0.020 4.020 25 C 0.016 3.984 26 C -0.206 4.206 27 C -0.194 4.194 28 C -0.206 4.206 29 C 0.004 3.996 30 H 0.044 0.956 31 H 0.066 0.934 32 H 0.012 0.988 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.068 0.932 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.211 0.789 41 H 0.061 0.939 42 H 0.078 0.922 43 H 0.112 0.888 44 H 0.074 0.926 45 H 0.077 0.923 46 H 0.074 0.926 47 H 0.109 0.891 48 H 0.079 0.921 49 H 0.062 0.938 50 H 0.105 0.895 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 10.167 -15.796 -14.170 23.530 hybrid contribution 0.030 0.460 0.449 0.644 sum 10.197 -15.336 -13.720 22.965 Atomic orbital electron populations 1.20794 0.82549 0.95561 0.99104 1.43930 1.01903 1.00638 1.86057 1.19229 0.96574 0.84989 1.37239 0.91086 1.24947 0.97539 0.98342 0.98845 1.70091 1.17030 1.26601 1.41930 0.86297 0.78940 0.84177 0.77453 1.21438 1.21882 1.20398 1.20642 0.96301 0.88617 0.91024 1.23220 0.97296 0.92028 1.01382 0.90478 1.22702 0.99422 0.99005 0.95729 1.22362 0.99100 0.83627 0.97794 1.48607 1.57141 1.07644 1.21497 1.16857 0.77536 0.87335 0.79488 1.90668 1.57907 1.16005 1.75635 1.20306 1.16696 0.92313 0.99741 1.23914 0.95735 0.94954 0.91901 1.46147 1.47360 1.09378 1.14260 0.71425 1.77136 1.24512 0.93427 1.16911 1.22469 0.93438 0.94791 0.91281 1.18991 0.97565 0.86830 0.94973 1.22111 0.97250 0.98808 1.02465 1.21835 1.00640 1.01491 0.95395 1.22095 0.95282 0.99331 1.03879 1.22314 0.94965 0.94424 0.87874 0.95596 0.93395 0.98781 0.93861 0.94064 0.93246 0.90526 0.90428 0.91758 0.91651 0.78941 0.93901 0.92214 0.88795 0.92618 0.92312 0.92586 0.89091 0.92139 0.93822 0.89490 0.91556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.97 8.97 59.85 0.54 4.51 16 2 N -0.60 -14.49 2.91 -181.12 -0.53 -15.02 16 3 C -0.25 -6.70 9.16 -15.06 -0.14 -6.84 16 4 H 0.07 1.86 7.21 -52.48 -0.38 1.49 16 5 C 0.00 0.03 5.11 -17.43 -0.09 -0.06 16 6 N -0.91 -26.49 10.51 55.49 0.58 -25.91 16 7 Si 0.90 22.29 29.57 -169.99 -5.03 17.26 16 8 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 9 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 C 0.16 3.02 5.18 -4.04 -0.02 3.00 16 12 C -0.12 -1.81 3.26 -88.47 -0.29 -2.10 16 13 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 14 C -0.13 -1.39 6.41 -24.89 -0.16 -1.55 16 15 C 0.09 0.94 5.01 -2.81 -0.01 0.93 16 16 N -0.62 -8.83 3.34 -171.41 -0.57 -9.40 16 17 C 0.60 9.32 7.24 -12.52 -0.09 9.23 16 18 O -0.52 -9.62 10.66 5.28 0.06 -9.56 16 19 C -0.28 -3.61 5.86 -105.07 -0.62 -4.23 16 20 C 0.09 0.80 10.50 -16.56 -0.17 0.62 16 21 N -0.47 -4.05 7.29 30.85 0.22 -3.82 16 22 H 0.44 2.07 8.96 -182.72 -1.64 0.43 16 23 N -0.30 -3.66 11.93 33.90 0.40 -3.26 16 24 C 0.15 2.00 5.64 -82.02 -0.46 1.54 16 25 C 0.02 0.24 0.75 -155.65 -0.12 0.13 16 26 C -0.15 -2.00 8.20 37.16 0.30 -1.70 16 27 C -0.14 -1.52 7.94 37.16 0.30 -1.22 16 28 C -0.15 -2.03 8.19 37.16 0.30 -1.73 16 29 C 0.13 2.14 5.28 -2.53 -0.01 2.13 16 30 H 0.03 0.67 7.50 -51.93 -0.39 0.28 16 31 H 0.05 1.27 7.02 -51.93 -0.36 0.90 16 32 H -0.01 -0.13 8.04 -51.93 -0.42 -0.55 16 33 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 34 H 0.04 0.71 8.07 -51.93 -0.42 0.29 16 35 H 0.05 0.93 7.86 -51.93 -0.41 0.52 16 36 H 0.08 0.77 8.04 -51.93 -0.42 0.35 16 37 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.49 6.75 -51.93 -0.35 0.14 16 39 H 0.07 0.55 7.12 -51.93 -0.37 0.18 16 40 H 0.19 1.12 4.45 -52.48 -0.23 0.89 16 41 H 0.04 0.53 8.13 -51.93 -0.42 0.11 16 42 H 0.06 0.75 8.07 -51.93 -0.42 0.33 16 43 H 0.09 1.50 4.73 -51.93 -0.25 1.25 16 44 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 45 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 46 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 47 H 0.09 1.48 4.63 -51.93 -0.24 1.24 16 48 H 0.06 0.77 8.06 -51.93 -0.42 0.35 16 49 H 0.04 0.55 8.12 -51.93 -0.42 0.13 16 50 H 0.09 1.79 8.04 -51.93 -0.42 1.37 16 51 H 0.07 1.19 7.80 -51.93 -0.41 0.78 16 LS Contribution 387.84 15.07 5.84 5.84 Total: -1.00 -32.89 387.84 -9.38 -42.27 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -9.62 Total: -1.06 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: -0.74 Total: 2.65 kcal Atomic # 7 Polarization: -57.52 SS G_CDS: 0.11 Total: -57.41 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: 0.06 Total: -9.56 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.03 Total: 17.26 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.89 -9.38 -42.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664848151.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.308 kcal (2) G-P(sol) polarization free energy of solvation -32.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds