Wall clock time and date at job start Tue Mar 31 2020 20:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36937 * 119.99563 * 2 1 4 4 H 1.08009 * 119.99831 * 199.96555 * 3 2 1 5 5 C 1.38804 * 120.00475 * 19.96266 * 3 2 1 6 6 N 1.31628 * 120.00010 * 12.39847 * 5 3 2 7 7 Si 1.86806 * 120.00206 * 192.40052 * 5 3 2 8 8 H 1.48504 * 109.47214 * 90.00019 * 7 5 3 9 9 H 1.48504 * 109.46797 * 209.99939 * 7 5 3 10 10 H 1.48500 * 109.47035 * 329.99722 * 7 5 3 11 11 C 1.46495 * 119.99903 * 180.02562 * 2 1 3 12 12 C 1.52999 * 109.47252 * 90.00246 * 11 2 1 13 13 H 1.08997 * 110.91360 * 308.89498 * 12 11 2 14 14 C 1.55161 * 111.00303 * 184.99933 * 12 11 2 15 15 C 1.54328 * 103.09903 * 206.32981 * 14 12 11 16 16 N 1.47489 * 107.03256 * 22.24193 * 15 14 12 17 17 C 1.34782 * 125.58674 * 181.00214 * 16 15 14 18 18 O 1.21602 * 119.99729 * 180.02562 * 17 16 15 19 19 C 1.47424 * 120.00249 * 0.02776 * 17 16 15 20 20 C 1.38049 * 126.41531 * 355.30326 * 19 17 16 21 21 N 1.34261 * 107.42034 * 179.87528 * 20 19 17 22 22 H 0.97000 * 125.75485 * 180.10923 * 21 20 19 23 23 N 1.39932 * 108.48693 * 0.39926 * 21 20 19 24 24 C 1.30444 * 108.90153 * 359.74817 * 23 21 20 25 25 C 1.50707 * 125.99369 * 179.97438 * 24 23 21 26 26 C 1.52995 * 109.47138 * 241.54473 * 25 24 23 27 27 C 1.53010 * 109.46702 * 1.54444 * 25 24 23 28 28 C 1.53001 * 109.47271 * 121.54019 * 25 24 23 29 29 C 1.47417 * 108.76483 * 1.02186 * 16 15 14 30 30 H 1.09000 * 109.46973 * 273.88765 * 1 2 3 31 31 H 1.09000 * 109.46935 * 33.88653 * 1 2 3 32 32 H 1.08999 * 109.47109 * 153.88934 * 1 2 3 33 33 H 0.96999 * 119.99780 * 179.97438 * 6 5 3 34 34 H 1.08996 * 109.47343 * 329.99500 * 11 2 1 35 35 H 1.09006 * 109.46824 * 209.99927 * 11 2 1 36 36 H 1.08993 * 110.71490 * 324.78134 * 14 12 11 37 37 H 1.09001 * 110.71806 * 87.87857 * 14 12 11 38 38 H 1.09004 * 109.88003 * 141.69459 * 15 14 12 39 39 H 1.08998 * 109.88473 * 262.86337 * 15 14 12 40 40 H 1.08004 * 126.28790 * 0.03539 * 20 19 17 41 41 H 1.09001 * 109.47133 * 68.49387 * 26 25 24 42 42 H 1.09000 * 109.46665 * 188.49093 * 26 25 24 43 43 H 1.08999 * 109.47432 * 308.49438 * 26 25 24 44 44 H 1.08997 * 109.46823 * 60.00138 * 27 25 24 45 45 H 1.09000 * 109.46731 * 180.02562 * 27 25 24 46 46 H 1.09002 * 109.46644 * 299.99629 * 27 25 24 47 47 H 1.09001 * 109.46713 * 50.98057 * 28 25 24 48 48 H 1.08995 * 109.47042 * 170.98519 * 28 25 24 49 49 H 1.09001 * 109.47290 * 290.98936 * 28 25 24 50 50 H 1.08997 * 110.37289 * 217.05624 * 29 16 15 51 51 H 1.09005 * 110.36775 * 94.72864 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1810 1.2141 -0.3194 5 6 1.5182 2.3519 0.4104 6 7 0.3559 2.2896 1.0251 7 14 2.3177 4.0096 0.0903 8 1 1.8727 4.5274 -1.2285 9 1 1.9213 4.9644 1.1564 10 1 3.7946 3.8547 0.0886 11 6 2.1975 -1.2687 -0.0006 12 6 2.4525 -1.7097 -1.4432 13 1 1.5298 -1.6960 -2.0232 14 6 3.1161 -3.1116 -1.4872 15 6 3.8877 -3.0916 -2.8236 16 7 4.1113 -1.6761 -3.1722 17 6 4.7357 -1.2305 -4.2804 18 8 4.8651 -0.0358 -4.4666 19 6 5.2619 -2.1914 -5.2669 20 6 5.2698 -3.5667 -5.1477 21 7 5.8324 -4.0634 -6.2610 22 1 5.9697 -5.0037 -6.4556 23 7 6.1931 -2.9956 -7.0903 24 6 5.8583 -1.8770 -6.5086 25 6 6.0710 -0.4920 -7.0633 26 6 6.9916 0.2958 -6.1292 27 6 6.7133 -0.5906 -8.4486 28 6 4.7239 0.2248 -7.1757 29 6 3.5399 -0.8299 -2.1090 30 1 -0.3633 0.0697 1.0253 31 1 -0.3633 0.8531 -0.5730 32 1 -0.3633 -0.9228 -0.4523 33 1 -0.0852 3.1044 1.3122 34 1 1.6085 -2.0285 0.5130 35 1 3.1499 -1.1385 0.5133 36 1 3.8004 -3.2406 -0.6487 37 1 2.3597 -3.8964 -1.4902 38 1 4.8433 -3.6031 -2.7076 39 1 3.2967 -3.5773 -3.6001 40 1 4.8905 -4.1382 -4.3135 41 1 7.9953 -0.1278 -6.1661 42 1 7.0252 1.3381 -6.4463 43 1 6.6102 0.2382 -5.1097 44 1 6.0573 -1.1518 -9.1140 45 1 6.8674 0.4111 -8.8496 46 1 7.6729 -1.1012 -8.3685 47 1 4.1948 0.1547 -6.2253 48 1 4.8898 1.2733 -7.4228 49 1 4.1275 -0.2432 -7.9589 50 1 3.0924 0.0670 -2.5372 51 1 4.3080 -0.5622 -1.3832 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001664848151.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:22 Heat of formation + Delta-G solvation = 48.845657 kcal Electronic energy + Delta-G solvation = -30285.322514 eV Core-core repulsion = 26414.538644 eV Total energy + Delta-G solvation = -3870.783871 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.62741 -40.58271 -38.86410 -37.64654 -36.91431 -33.97392 -32.47514 -32.00129 -31.30185 -29.93428 -28.11385 -28.06755 -27.86148 -27.16172 -25.12058 -23.71811 -23.06760 -22.50515 -21.14286 -20.89591 -19.20436 -18.75667 -18.49102 -17.62623 -17.03248 -16.77858 -16.39585 -16.07550 -15.84782 -15.64625 -15.27205 -15.23747 -15.01465 -14.51614 -14.48172 -14.31474 -14.09369 -13.76650 -13.58705 -13.07345 -13.05608 -12.98596 -12.90674 -12.83896 -12.62423 -12.42230 -12.24928 -12.16346 -12.09562 -12.06787 -11.92892 -11.88012 -11.83252 -11.47766 -11.47490 -11.34967 -10.61672 -10.57165 -10.52178 -9.85654 -9.44217 -8.73922 -7.79597 -5.23297 0.55949 1.10016 1.43392 1.47020 1.53461 1.76610 2.17579 2.45124 2.52085 3.32833 3.36690 3.57734 3.64349 3.79821 3.90140 4.01320 4.10010 4.11167 4.18331 4.33657 4.39306 4.43611 4.48262 4.56859 4.72464 4.80459 4.81606 4.82217 4.88430 4.93099 4.95008 4.98548 5.02149 5.04388 5.08451 5.10635 5.15477 5.19738 5.32095 5.37874 5.44750 5.48025 5.51913 5.59668 5.64875 5.68492 5.79117 6.28773 6.36763 6.52881 6.71840 7.20714 7.35496 7.94706 8.34854 9.23890 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.013807 B = 0.003389 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.526918 B = 8260.744559 C = 9848.338364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.620 5.620 3 C -0.243 4.243 4 H 0.069 0.931 5 C -0.054 4.054 6 N -0.940 5.940 7 Si 0.952 3.048 8 H -0.294 1.294 9 H -0.292 1.292 10 H -0.272 1.272 11 C 0.160 3.840 12 C -0.108 4.108 13 H 0.065 0.935 14 C -0.115 4.115 15 C 0.087 3.913 16 N -0.618 5.618 17 C 0.589 3.411 18 O -0.566 6.566 19 C -0.310 4.310 20 C 0.121 3.879 21 N -0.447 5.447 22 H 0.462 0.538 23 N -0.314 5.314 24 C 0.133 3.867 25 C 0.015 3.985 26 C -0.143 4.143 27 C -0.128 4.128 28 C -0.143 4.143 29 C 0.132 3.868 30 H 0.002 0.998 31 H 0.014 0.986 32 H 0.031 0.969 33 H 0.245 0.755 34 H 0.064 0.936 35 H 0.046 0.954 36 H 0.088 0.912 37 H 0.109 0.891 38 H 0.100 0.900 39 H 0.092 0.908 40 H 0.235 0.765 41 H 0.050 0.950 42 H 0.061 0.939 43 H 0.068 0.932 44 H 0.055 0.945 45 H 0.068 0.932 46 H 0.057 0.943 47 H 0.063 0.937 48 H 0.061 0.939 49 H 0.049 0.951 50 H 0.036 0.964 51 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.863 -20.108 -13.963 26.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.343 5.343 3 C -0.373 4.373 4 H 0.087 0.913 5 C -0.249 4.249 6 N -0.588 5.588 7 Si 0.782 3.218 8 H -0.221 1.221 9 H -0.219 1.219 10 H -0.197 1.197 11 C 0.034 3.966 12 C -0.130 4.130 13 H 0.084 0.916 14 C -0.153 4.153 15 C -0.035 4.035 16 N -0.351 5.351 17 C 0.381 3.619 18 O -0.447 6.447 19 C -0.325 4.325 20 C -0.032 4.032 21 N -0.153 5.153 22 H 0.310 0.690 23 N -0.136 5.136 24 C -0.035 4.035 25 C 0.013 3.987 26 C -0.201 4.201 27 C -0.185 4.185 28 C -0.201 4.201 29 C 0.010 3.990 30 H 0.020 0.980 31 H 0.033 0.967 32 H 0.050 0.950 33 H 0.055 0.945 34 H 0.082 0.918 35 H 0.065 0.935 36 H 0.107 0.893 37 H 0.127 0.873 38 H 0.118 0.882 39 H 0.110 0.890 40 H 0.251 0.749 41 H 0.069 0.931 42 H 0.080 0.920 43 H 0.086 0.914 44 H 0.074 0.926 45 H 0.087 0.913 46 H 0.076 0.924 47 H 0.082 0.918 48 H 0.080 0.920 49 H 0.068 0.932 50 H 0.055 0.945 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 11.416 -19.911 -15.100 27.473 hybrid contribution -0.314 1.590 0.707 1.768 sum 11.102 -18.321 -14.394 25.809 Atomic orbital electron populations 1.20518 0.82884 0.95904 0.97336 1.44182 1.02115 1.01878 1.86161 1.19465 0.96475 0.86314 1.35088 0.91323 1.25557 0.98391 1.01020 0.99905 1.70225 1.18238 1.26631 1.43719 0.85477 0.78441 0.81196 0.76696 1.22133 1.21892 1.19747 1.20875 0.95815 0.86712 0.93239 1.22906 0.96583 0.95169 0.98326 0.91641 1.22700 1.00016 0.95963 0.96666 1.22746 1.01387 0.81197 0.98132 1.48608 1.56644 1.09268 1.20534 1.17320 0.77219 0.87389 0.79956 1.90650 1.59467 1.18033 1.76592 1.20180 1.19093 0.93636 0.99559 1.24338 0.93188 0.93483 0.92240 1.46179 1.45755 1.09887 1.13449 0.68972 1.77078 1.25012 0.93775 1.17765 1.22487 0.94141 0.95080 0.91815 1.18970 0.96808 0.87082 0.95814 1.22018 0.97650 0.99250 1.01197 1.21755 1.00420 1.02165 0.94175 1.22004 0.95874 0.99757 1.02449 1.21962 0.94970 0.93840 0.88275 0.98016 0.96741 0.95045 0.94530 0.91810 0.93520 0.89304 0.87266 0.88185 0.88965 0.74923 0.93131 0.92039 0.91380 0.92562 0.91305 0.92409 0.91822 0.92001 0.93209 0.94488 0.93145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.73 8.97 127.77 1.15 9.88 16 2 N -0.62 -30.11 2.91 -726.94 -2.12 -32.23 16 3 C -0.24 -13.33 9.16 84.03 0.77 -12.56 16 4 H 0.07 3.73 7.21 -2.91 -0.02 3.71 16 5 C -0.05 -3.12 5.11 84.86 0.43 -2.69 16 6 N -0.94 -56.55 10.51 21.65 0.23 -56.33 16 7 Si 0.95 47.43 29.57 68.60 2.03 49.46 16 8 H -0.29 -14.80 7.11 99.48 0.71 -14.09 16 9 H -0.29 -14.46 7.11 99.48 0.71 -13.75 16 10 H -0.27 -13.12 7.11 99.48 0.71 -12.42 16 11 C 0.16 5.73 5.18 86.38 0.45 6.18 16 12 C -0.11 -3.16 3.26 -9.40 -0.03 -3.19 16 13 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 14 C -0.12 -1.92 6.41 31.79 0.20 -1.71 16 15 C 0.09 1.31 5.01 86.64 0.43 1.75 16 16 N -0.62 -16.96 3.34 -814.47 -2.72 -19.68 16 17 C 0.59 18.37 7.24 86.66 0.63 18.99 16 18 O -0.57 -22.03 10.66 -4.04 -0.04 -22.08 16 19 C -0.31 -7.57 5.86 -20.15 -0.12 -7.69 16 20 C 0.12 1.69 10.50 84.28 0.88 2.57 16 21 N -0.45 -5.87 7.29 -56.31 -0.41 -6.28 16 22 H 0.46 2.08 8.96 -213.43 -1.91 0.17 16 23 N -0.31 -6.93 11.93 -46.67 -0.56 -7.48 16 24 C 0.13 3.41 5.64 43.52 0.25 3.66 16 25 C 0.02 0.40 0.75 -52.92 -0.04 0.36 16 26 C -0.14 -3.96 8.20 71.98 0.59 -3.37 16 27 C -0.13 -2.72 7.94 71.99 0.57 -2.15 16 28 C -0.14 -4.05 8.19 71.98 0.59 -3.46 16 29 C 0.13 4.58 5.28 86.86 0.46 5.04 16 30 H 0.00 0.08 7.50 -2.39 -0.02 0.06 16 31 H 0.01 0.76 7.02 -2.39 -0.02 0.75 16 32 H 0.03 1.27 8.04 -2.39 -0.02 1.25 16 33 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 34 H 0.06 2.02 8.07 -2.39 -0.02 2.00 16 35 H 0.05 1.70 7.86 -2.38 -0.02 1.68 16 36 H 0.09 1.33 8.04 -2.39 -0.02 1.31 16 37 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.10 0.88 6.75 -2.38 -0.02 0.86 16 39 H 0.09 0.97 7.12 -2.39 -0.02 0.95 16 40 H 0.24 1.13 4.45 -2.91 -0.01 1.12 16 41 H 0.05 1.26 8.13 -2.39 -0.02 1.24 16 42 H 0.06 1.60 8.07 -2.39 -0.02 1.58 16 43 H 0.07 2.29 4.73 -2.39 -0.01 2.28 16 44 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 46 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 47 H 0.06 2.20 4.63 -2.39 -0.01 2.19 16 48 H 0.06 1.65 8.06 -2.39 -0.02 1.63 16 49 H 0.05 1.28 8.12 -2.39 -0.02 1.26 16 50 H 0.04 1.62 8.04 -2.39 -0.02 1.60 16 51 H 0.05 1.87 7.80 -2.38 -0.02 1.85 16 Total: -1.00 -77.83 387.84 2.65 -75.18 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -0.98 Total: 7.83 kcal Atomic # 6 Polarization: 4.40 SS G_CDS: 7.21 Total: 11.61 kcal Atomic # 7 Polarization: -116.43 SS G_CDS: -5.58 Total: -122.00 kcal Atomic # 8 Polarization: -22.03 SS G_CDS: -0.04 Total: -22.08 kcal Atomic # 14 Polarization: 47.43 SS G_CDS: 2.03 Total: 49.46 kcal Total: -77.83 2.65 -75.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664848151.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.030 kcal (2) G-P(sol) polarization free energy of solvation -77.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds