Wall clock time and date at job start Tue Mar 31 2020 19:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47362 * 2 1 4 4 C 1.50708 * 109.46976 * 119.99951 * 2 1 3 5 5 N 1.30442 * 125.98393 * 300.02590 * 4 2 1 6 6 N 1.39941 * 108.89439 * 179.73445 * 5 4 2 7 7 C 1.46500 * 125.75455 * 179.97438 * 6 5 4 8 8 C 1.34256 * 108.49163 * 359.97438 * 6 5 4 9 9 C 1.38050 * 107.41765 * 359.97438 * 8 6 5 10 10 C 1.47426 * 126.41680 * 179.97438 * 9 8 6 11 11 O 1.21604 * 120.00209 * 180.02562 * 10 9 8 12 12 N 1.34786 * 119.99923 * 0.02562 * 10 9 8 13 13 C 1.47021 * 125.64532 * 359.69230 * 12 10 9 14 14 C 1.54316 * 107.27356 * 180.96617 * 13 12 10 15 15 C 1.55159 * 102.86210 * 22.52393 * 14 13 12 16 16 H 1.09005 * 111.00346 * 82.37911 * 15 14 13 17 17 C 1.52996 * 111.03807 * 206.21241 * 15 14 13 18 18 N 1.46494 * 109.47442 * 178.66967 * 17 15 14 19 19 C 1.46504 * 119.99904 * 89.99736 * 18 17 15 20 20 C 1.36937 * 120.00319 * 270.00543 * 18 17 15 21 21 H 1.07995 * 120.00632 * 141.73721 * 20 18 17 22 22 C 1.38813 * 119.99600 * 321.73631 * 20 18 17 23 23 N 1.31618 * 119.99896 * 157.41983 * 22 20 18 24 24 Si 1.86800 * 120.00292 * 337.42324 * 22 20 18 25 25 H 1.48507 * 109.47169 * 95.66341 * 24 22 20 26 26 H 1.48496 * 109.47639 * 215.66521 * 24 22 20 27 27 H 1.48506 * 109.47049 * 335.66670 * 24 22 20 28 28 C 1.47419 * 125.64922 * 179.97438 * 12 10 9 29 29 H 1.09000 * 109.47683 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47664 * 300.00462 * 1 2 3 31 31 H 1.09002 * 109.46964 * 59.99982 * 1 2 3 32 32 H 1.08999 * 109.47214 * 239.99255 * 2 1 3 33 33 H 1.08998 * 109.47378 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.47096 * 299.99937 * 3 2 1 35 35 H 1.09004 * 109.46774 * 59.99872 * 3 2 1 36 36 H 1.08997 * 109.46979 * 89.97415 * 7 6 5 37 37 H 1.08998 * 109.46923 * 209.97930 * 7 6 5 38 38 H 1.09007 * 109.47068 * 329.97757 * 7 6 5 39 39 H 1.07997 * 126.29058 * 180.02562 * 8 6 5 40 40 H 1.09004 * 109.88114 * 300.51123 * 13 12 10 41 41 H 1.09001 * 109.88638 * 61.67939 * 13 12 10 42 42 H 1.08998 * 110.92540 * 264.10763 * 14 13 12 43 43 H 1.09004 * 110.73820 * 140.85306 * 14 13 12 44 44 H 1.09008 * 109.47290 * 298.67524 * 17 15 14 45 45 H 1.09001 * 109.47061 * 58.66752 * 17 15 14 46 46 H 1.09010 * 109.46748 * 85.65825 * 19 18 17 47 47 H 1.08994 * 109.47072 * 205.65116 * 19 18 17 48 48 H 1.08992 * 109.47370 * 325.65664 * 19 18 17 49 49 H 0.97005 * 119.99923 * 179.97438 * 23 22 20 50 50 H 1.09000 * 110.37050 * 274.67706 * 28 12 10 51 51 H 1.08997 * 110.36487 * 36.88929 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7898 -0.3683 2.4657 6 7 2.4246 -1.2765 3.3205 7 6 2.3952 -1.2380 4.7847 8 6 3.0652 -2.1889 2.5724 9 6 2.8420 -1.8681 1.2484 10 6 3.3544 -2.5959 0.0732 11 8 3.0845 -2.2082 -1.0474 12 7 4.1220 -3.6911 0.2407 13 6 4.5285 -4.2630 1.5327 14 6 5.4159 -5.4892 1.2321 15 6 5.9295 -5.2004 -0.2033 16 1 6.7874 -4.5282 -0.1834 17 6 6.2711 -6.4992 -0.9361 18 7 6.7212 -6.1892 -2.2953 19 6 8.1426 -5.9534 -2.5603 20 6 5.8133 -6.1197 -3.3181 21 1 5.9227 -5.3696 -4.0873 22 6 4.7524 -7.0136 -3.3662 23 7 3.6641 -6.7076 -4.0403 24 14 4.8690 -8.6507 -2.4743 25 1 4.2295 -8.5337 -1.1391 26 1 4.1736 -9.6967 -3.2663 27 1 6.2970 -9.0232 -2.3081 28 6 4.6977 -4.5105 -0.8412 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.5460 -1.8178 5.1463 37 1 3.3189 -1.6625 5.1779 38 1 2.2987 -0.2050 5.1192 39 1 3.6474 -3.0213 2.9391 40 1 5.0930 -3.5255 2.1033 41 1 3.6476 -4.5742 2.0941 42 1 4.8305 -6.4083 1.2546 43 1 6.2471 -5.5457 1.9350 44 1 7.0646 -7.0207 -0.4006 45 1 5.3862 -7.1339 -0.9823 46 1 8.6425 -6.9062 -2.7352 47 1 8.2478 -5.3209 -3.4417 48 1 8.5951 -5.4580 -1.7014 49 1 2.9229 -7.3323 -4.0743 50 1 3.9769 -5.2559 -1.1772 51 1 5.0043 -3.8778 -1.6741 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001664853720.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:12 Heat of formation + Delta-G solvation = 72.192266 kcal Electronic energy + Delta-G solvation = -30221.822123 eV Core-core repulsion = 26352.050638 eV Total energy + Delta-G solvation = -3869.771486 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.54142 -39.33909 -37.35930 -35.84152 -35.33339 -32.66767 -31.99847 -31.34706 -30.21966 -28.83344 -27.19376 -27.04889 -26.22667 -25.58635 -23.67206 -22.51365 -21.53597 -21.10157 -20.11712 -19.57356 -18.73155 -16.95363 -16.79813 -16.23042 -15.89553 -15.46903 -15.21373 -14.96756 -14.70194 -14.40122 -14.00932 -13.91107 -13.47949 -13.38602 -13.31025 -13.13668 -13.07021 -12.58538 -12.53413 -12.47905 -12.19059 -12.06614 -11.87511 -11.70691 -11.51987 -11.31185 -11.11165 -11.00274 -10.94695 -10.82530 -10.64245 -10.59389 -10.30804 -10.20727 -9.74697 -9.53662 -9.41429 -9.29594 -8.68574 -8.49235 -8.13539 -6.78866 -5.95560 -3.37875 1.49249 2.22666 2.23175 3.27928 3.42955 3.46553 3.51271 3.73273 4.19738 4.47088 4.52695 4.67426 4.75040 4.79876 4.84208 5.02287 5.02964 5.05104 5.16058 5.28568 5.30235 5.35714 5.41959 5.48785 5.57463 5.64028 5.72175 5.72577 5.90681 5.91466 5.95631 5.97218 6.09533 6.17283 6.21526 6.30095 6.32708 6.35870 6.41475 6.52693 6.59677 6.66745 6.71729 6.73054 6.82141 6.91475 7.04061 7.55711 7.99725 8.08127 8.42415 8.66887 9.01115 9.73532 10.14368 11.19270 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.014708 B = 0.003394 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.219821 B = 8248.802210 C = 9029.491736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.033 4.033 3 C -0.137 4.137 4 C 0.142 3.858 5 N -0.300 5.300 6 N -0.368 5.368 7 C 0.099 3.901 8 C 0.080 3.920 9 C -0.275 4.275 10 C 0.602 3.398 11 O -0.534 6.534 12 N -0.617 5.617 13 C 0.097 3.903 14 C -0.133 4.133 15 C -0.113 4.113 16 H 0.075 0.925 17 C 0.148 3.852 18 N -0.612 5.612 19 C 0.125 3.875 20 C -0.269 4.269 21 H 0.079 0.921 22 C 0.040 3.960 23 N -0.891 5.891 24 Si 0.870 3.130 25 H -0.286 1.286 26 H -0.301 1.301 27 H -0.270 1.270 28 C 0.134 3.866 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.120 0.880 33 H 0.053 0.947 34 H 0.061 0.939 35 H 0.055 0.945 36 H 0.077 0.923 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.191 0.809 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.043 0.957 45 H 0.056 0.944 46 H 0.006 0.994 47 H 0.045 0.955 48 H 0.025 0.975 49 H 0.263 0.737 50 H 0.077 0.923 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.446 9.573 19.723 21.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.053 4.053 3 C -0.195 4.195 4 C -0.025 4.025 5 N -0.121 5.121 6 N -0.147 5.147 7 C -0.042 4.042 8 C -0.070 4.070 9 C -0.290 4.290 10 C 0.391 3.609 11 O -0.411 6.411 12 N -0.351 5.351 13 C -0.027 4.027 14 C -0.171 4.171 15 C -0.135 4.135 16 H 0.093 0.907 17 C 0.022 3.978 18 N -0.335 5.335 19 C -0.020 4.020 20 C -0.398 4.398 21 H 0.096 0.904 22 C -0.161 4.161 23 N -0.532 5.532 24 Si 0.701 3.299 25 H -0.214 1.214 26 H -0.229 1.229 27 H -0.195 1.195 28 C 0.013 3.987 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.138 0.862 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.096 0.904 37 H 0.107 0.893 38 H 0.110 0.890 39 H 0.208 0.792 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.094 0.906 43 H 0.096 0.904 44 H 0.061 0.939 45 H 0.074 0.926 46 H 0.024 0.976 47 H 0.064 0.936 48 H 0.044 0.956 49 H 0.073 0.927 50 H 0.096 0.904 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.373 10.636 19.958 22.656 hybrid contribution 0.403 -1.783 0.353 1.862 sum -0.970 8.853 20.310 22.177 Atomic orbital electron populations 1.21765 0.93991 1.02010 1.01811 1.20011 0.95922 0.95673 0.93739 1.21763 1.01121 0.94810 1.01821 1.22389 0.93903 0.92954 0.93301 1.77096 1.20496 1.14354 1.00160 1.48314 1.38529 1.20928 1.06893 1.21925 1.03536 1.04883 0.73839 1.23830 0.96812 0.95048 0.91284 1.20343 1.12818 1.03230 0.92623 1.16843 0.77732 0.78797 0.87542 1.90736 1.58658 1.66714 1.25022 1.48527 1.50767 1.27439 1.08383 1.22217 0.97855 0.95634 0.86967 1.22729 0.98962 0.97143 0.98297 1.23036 0.97412 1.00257 0.92833 0.90699 1.21118 0.98035 0.93012 0.85641 1.44050 1.02697 1.83642 1.03157 1.21075 0.85106 0.97421 0.98419 1.18761 1.04094 1.12251 1.04696 0.90352 1.25462 0.96227 0.97360 0.97074 1.69895 1.03940 1.35529 1.43809 0.87042 0.78111 0.86427 0.78357 1.21437 1.22931 1.19502 1.22215 0.93903 0.93713 0.88821 0.92665 0.92647 0.91928 0.86183 0.92748 0.91955 0.92638 0.90443 0.89260 0.89049 0.79207 0.91845 0.91919 0.90578 0.90440 0.93860 0.92627 0.97634 0.93619 0.95597 0.92728 0.90447 0.89568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.18 37.16 0.34 -1.41 16 2 C -0.03 -0.48 3.26 -91.77 -0.30 -0.78 16 3 C -0.14 -1.69 9.18 37.16 0.34 -1.35 16 4 C 0.14 2.18 5.77 -82.02 -0.47 1.71 16 5 N -0.30 -4.21 12.50 33.90 0.42 -3.79 16 6 N -0.37 -4.10 3.98 -67.60 -0.27 -4.37 16 7 C 0.10 0.57 11.44 59.85 0.68 1.26 16 8 C 0.08 0.94 9.97 -16.56 -0.17 0.78 16 9 C -0.28 -4.32 6.10 -105.07 -0.64 -4.96 16 10 C 0.60 11.40 7.85 -12.52 -0.10 11.30 16 11 O -0.53 -12.09 14.82 5.27 0.08 -12.02 16 12 N -0.62 -10.85 3.33 -171.79 -0.57 -11.42 16 13 C 0.10 1.21 4.98 -3.07 -0.02 1.19 16 14 C -0.13 -1.72 6.42 -24.90 -0.16 -1.88 16 15 C -0.11 -1.97 3.29 -88.47 -0.29 -2.26 16 16 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 17 C 0.15 2.99 4.07 -4.05 -0.02 2.97 16 18 N -0.61 -14.08 2.41 -181.12 -0.44 -14.51 16 19 C 0.12 2.44 10.70 59.85 0.64 3.08 16 20 C -0.27 -7.35 8.94 -15.06 -0.13 -7.48 16 21 H 0.08 2.35 8.06 -52.49 -0.42 1.93 16 22 C 0.04 1.12 5.29 -17.43 -0.09 1.03 16 23 N -0.89 -26.95 13.97 55.49 0.78 -26.18 16 24 Si 0.87 21.66 25.09 -169.99 -4.26 17.40 16 25 H -0.29 -6.80 6.68 56.52 0.38 -6.42 16 26 H -0.30 -7.70 7.11 56.52 0.40 -7.30 16 27 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 28 C 0.13 2.77 5.36 -2.53 -0.01 2.76 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.12 2.06 5.60 -51.93 -0.29 1.77 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.19 1.60 4.42 -52.49 -0.23 1.37 16 40 H 0.06 0.64 6.87 -51.93 -0.36 0.28 16 41 H 0.06 0.67 6.99 -51.93 -0.36 0.31 16 42 H 0.08 1.02 8.04 -51.93 -0.42 0.60 16 43 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.04 0.77 8.07 -51.92 -0.42 0.35 16 45 H 0.06 1.24 3.34 -51.93 -0.17 1.07 16 46 H 0.01 0.11 8.14 -51.92 -0.42 -0.32 16 47 H 0.05 0.89 8.00 -51.93 -0.42 0.47 16 48 H 0.03 0.43 8.10 -51.93 -0.42 0.01 16 49 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 50 H 0.08 1.87 8.00 -51.93 -0.42 1.45 16 51 H 0.09 2.07 8.03 -51.93 -0.42 1.65 16 LS Contribution 398.34 15.07 6.00 6.00 Total: -1.00 -34.82 398.34 -7.23 -42.05 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -8.58 Total: 0.87 kcal Atomic # 6 Polarization: 6.35 SS G_CDS: -0.39 Total: 5.96 kcal Atomic # 7 Polarization: -60.19 SS G_CDS: -0.08 Total: -60.27 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: 0.08 Total: -12.02 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.26 Total: 17.40 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.82 -7.23 -42.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664853720.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.240 kcal (2) G-P(sol) polarization free energy of solvation -34.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds