Wall clock time and date at job start Tue Mar 31 2020 19:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47362 * 2 1 4 4 C 1.50708 * 109.46976 * 119.99951 * 2 1 3 5 5 N 1.30442 * 125.98393 * 300.02590 * 4 2 1 6 6 N 1.39941 * 108.89439 * 179.73445 * 5 4 2 7 7 C 1.46500 * 125.75455 * 179.97438 * 6 5 4 8 8 C 1.34256 * 108.49163 * 359.97438 * 6 5 4 9 9 C 1.38050 * 107.41765 * 359.97438 * 8 6 5 10 10 C 1.47426 * 126.41680 * 179.97438 * 9 8 6 11 11 O 1.21604 * 120.00209 * 180.02562 * 10 9 8 12 12 N 1.34786 * 119.99923 * 0.02562 * 10 9 8 13 13 C 1.47021 * 125.64532 * 359.69230 * 12 10 9 14 14 C 1.54316 * 107.27356 * 180.96617 * 13 12 10 15 15 C 1.55159 * 102.86210 * 22.52393 * 14 13 12 16 16 H 1.09005 * 111.00346 * 82.37911 * 15 14 13 17 17 C 1.52996 * 111.03807 * 206.21241 * 15 14 13 18 18 N 1.46494 * 109.47442 * 178.66967 * 17 15 14 19 19 C 1.46504 * 119.99904 * 89.99736 * 18 17 15 20 20 C 1.36937 * 120.00319 * 270.00543 * 18 17 15 21 21 H 1.07995 * 120.00632 * 141.73721 * 20 18 17 22 22 C 1.38813 * 119.99600 * 321.73631 * 20 18 17 23 23 N 1.31618 * 119.99896 * 157.41983 * 22 20 18 24 24 Si 1.86800 * 120.00292 * 337.42324 * 22 20 18 25 25 H 1.48507 * 109.47169 * 95.66341 * 24 22 20 26 26 H 1.48496 * 109.47639 * 215.66521 * 24 22 20 27 27 H 1.48506 * 109.47049 * 335.66670 * 24 22 20 28 28 C 1.47419 * 125.64922 * 179.97438 * 12 10 9 29 29 H 1.09000 * 109.47683 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47664 * 300.00462 * 1 2 3 31 31 H 1.09002 * 109.46964 * 59.99982 * 1 2 3 32 32 H 1.08999 * 109.47214 * 239.99255 * 2 1 3 33 33 H 1.08998 * 109.47378 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.47096 * 299.99937 * 3 2 1 35 35 H 1.09004 * 109.46774 * 59.99872 * 3 2 1 36 36 H 1.08997 * 109.46979 * 89.97415 * 7 6 5 37 37 H 1.08998 * 109.46923 * 209.97930 * 7 6 5 38 38 H 1.09007 * 109.47068 * 329.97757 * 7 6 5 39 39 H 1.07997 * 126.29058 * 180.02562 * 8 6 5 40 40 H 1.09004 * 109.88114 * 300.51123 * 13 12 10 41 41 H 1.09001 * 109.88638 * 61.67939 * 13 12 10 42 42 H 1.08998 * 110.92540 * 264.10763 * 14 13 12 43 43 H 1.09004 * 110.73820 * 140.85306 * 14 13 12 44 44 H 1.09008 * 109.47290 * 298.67524 * 17 15 14 45 45 H 1.09001 * 109.47061 * 58.66752 * 17 15 14 46 46 H 1.09010 * 109.46748 * 85.65825 * 19 18 17 47 47 H 1.08994 * 109.47072 * 205.65116 * 19 18 17 48 48 H 1.08992 * 109.47370 * 325.65664 * 19 18 17 49 49 H 0.97005 * 119.99923 * 179.97438 * 23 22 20 50 50 H 1.09000 * 110.37050 * 274.67706 * 28 12 10 51 51 H 1.08997 * 110.36487 * 36.88929 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7898 -0.3683 2.4657 6 7 2.4246 -1.2765 3.3205 7 6 2.3952 -1.2380 4.7847 8 6 3.0652 -2.1889 2.5724 9 6 2.8420 -1.8681 1.2484 10 6 3.3544 -2.5959 0.0732 11 8 3.0845 -2.2082 -1.0474 12 7 4.1220 -3.6911 0.2407 13 6 4.5285 -4.2630 1.5327 14 6 5.4159 -5.4892 1.2321 15 6 5.9295 -5.2004 -0.2033 16 1 6.7874 -4.5282 -0.1834 17 6 6.2711 -6.4992 -0.9361 18 7 6.7212 -6.1892 -2.2953 19 6 8.1426 -5.9534 -2.5603 20 6 5.8133 -6.1197 -3.3181 21 1 5.9227 -5.3696 -4.0873 22 6 4.7524 -7.0136 -3.3662 23 7 3.6641 -6.7076 -4.0403 24 14 4.8690 -8.6507 -2.4743 25 1 4.2295 -8.5337 -1.1391 26 1 4.1736 -9.6967 -3.2663 27 1 6.2970 -9.0232 -2.3081 28 6 4.6977 -4.5105 -0.8412 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.5460 -1.8178 5.1463 37 1 3.3189 -1.6625 5.1779 38 1 2.2987 -0.2050 5.1192 39 1 3.6474 -3.0213 2.9391 40 1 5.0930 -3.5255 2.1033 41 1 3.6476 -4.5742 2.0941 42 1 4.8305 -6.4083 1.2546 43 1 6.2471 -5.5457 1.9350 44 1 7.0646 -7.0207 -0.4006 45 1 5.3862 -7.1339 -0.9823 46 1 8.6425 -6.9062 -2.7352 47 1 8.2478 -5.3209 -3.4417 48 1 8.5951 -5.4580 -1.7014 49 1 2.9229 -7.3323 -4.0743 50 1 3.9769 -5.2559 -1.1772 51 1 5.0043 -3.8778 -1.6741 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001664853720.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:10 Heat of formation + Delta-G solvation = 47.838555 kcal Electronic energy + Delta-G solvation = -30222.878180 eV Core-core repulsion = 26352.050638 eV Total energy + Delta-G solvation = -3870.827542 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.57194 -40.68813 -38.84842 -37.26324 -36.63893 -33.95805 -33.50317 -32.91450 -31.35893 -30.11632 -28.09159 -28.07500 -27.97113 -27.17474 -24.96721 -23.51150 -23.01862 -22.43328 -21.50374 -20.91474 -19.80452 -18.79885 -18.11888 -17.31349 -17.11701 -17.07368 -16.55550 -16.19567 -15.80555 -15.63278 -15.47806 -15.33748 -14.96162 -14.68794 -14.50621 -14.32602 -14.21465 -14.09642 -13.76017 -13.54042 -13.47069 -13.31097 -13.24008 -12.99453 -12.91951 -12.64162 -12.53637 -12.39302 -12.16303 -12.10497 -12.03905 -11.89622 -11.76517 -11.70392 -11.57360 -11.28937 -10.72133 -10.59426 -10.37193 -9.82952 -9.48018 -8.70426 -8.14932 -5.54047 0.50214 1.06272 1.29096 1.42429 1.43985 1.53828 2.10986 2.41056 2.44261 3.06921 3.28772 3.41735 3.58151 3.71229 3.76788 3.93978 4.02232 4.06933 4.20750 4.21657 4.34024 4.36301 4.46017 4.47093 4.55540 4.60860 4.65258 4.69156 4.73102 4.74432 4.77472 4.79491 4.84137 4.89084 4.90991 5.01154 5.06335 5.09820 5.15035 5.16378 5.23121 5.27386 5.28695 5.41143 5.50894 5.53620 5.90960 5.97353 6.20708 6.50391 6.68306 7.04229 7.26561 7.68134 8.08237 9.04947 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.014708 B = 0.003394 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.219821 B = 8248.802210 C = 9029.491736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.040 4.040 3 C -0.128 4.128 4 C 0.127 3.873 5 N -0.314 5.314 6 N -0.357 5.357 7 C 0.085 3.915 8 C 0.112 3.888 9 C -0.316 4.316 10 C 0.592 3.408 11 O -0.594 6.594 12 N -0.620 5.620 13 C 0.087 3.913 14 C -0.119 4.119 15 C -0.105 4.105 16 H 0.087 0.913 17 C 0.142 3.858 18 N -0.627 5.627 19 C 0.123 3.877 20 C -0.255 4.255 21 H 0.027 0.973 22 C -0.017 4.017 23 N -0.949 5.949 24 Si 0.942 3.058 25 H -0.266 1.266 26 H -0.314 1.314 27 H -0.254 1.254 28 C 0.145 3.855 29 H 0.038 0.962 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.042 0.958 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.094 0.906 37 H 0.128 0.872 38 H 0.097 0.903 39 H 0.233 0.767 40 H 0.103 0.897 41 H 0.091 0.909 42 H 0.075 0.925 43 H 0.127 0.873 44 H 0.084 0.916 45 H 0.033 0.967 46 H 0.017 0.983 47 H 0.031 0.969 48 H 0.063 0.937 49 H 0.260 0.740 50 H 0.030 0.970 51 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.389 8.653 25.792 27.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.061 4.061 3 C -0.186 4.186 4 C -0.040 4.040 5 N -0.135 5.135 6 N -0.134 5.134 7 C -0.053 4.053 8 C -0.040 4.040 9 C -0.331 4.331 10 C 0.383 3.617 11 O -0.476 6.476 12 N -0.352 5.352 13 C -0.034 4.034 14 C -0.157 4.157 15 C -0.127 4.127 16 H 0.105 0.895 17 C 0.017 3.983 18 N -0.351 5.351 19 C -0.021 4.021 20 C -0.385 4.385 21 H 0.045 0.955 22 C -0.213 4.213 23 N -0.593 5.593 24 Si 0.770 3.230 25 H -0.193 1.193 26 H -0.243 1.243 27 H -0.177 1.177 28 C 0.022 3.978 29 H 0.057 0.943 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.101 0.899 33 H 0.061 0.939 34 H 0.093 0.907 35 H 0.084 0.916 36 H 0.113 0.887 37 H 0.146 0.854 38 H 0.115 0.885 39 H 0.248 0.752 40 H 0.121 0.879 41 H 0.109 0.891 42 H 0.094 0.906 43 H 0.145 0.855 44 H 0.102 0.898 45 H 0.051 0.949 46 H 0.036 0.964 47 H 0.050 0.950 48 H 0.081 0.919 49 H 0.068 0.932 50 H 0.048 0.952 51 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 0.504 9.723 26.133 27.888 hybrid contribution -0.135 -1.377 -1.489 2.032 sum 0.369 8.346 24.645 26.022 Atomic orbital electron populations 1.21699 0.92804 1.01295 1.02951 1.19953 0.96971 0.96489 0.92655 1.21689 1.00320 0.93653 1.02922 1.22436 0.94400 0.93299 0.93915 1.77037 1.21223 1.15487 0.99764 1.48799 1.36493 1.19468 1.08621 1.22476 1.06388 1.06150 0.70324 1.24225 0.95249 0.95062 0.89509 1.20157 1.15487 1.04366 0.93123 1.17484 0.77225 0.78978 0.87977 1.90702 1.60846 1.68466 1.27633 1.48570 1.50198 1.26803 1.09677 1.22671 0.99587 0.96393 0.84795 1.22776 1.00364 0.97099 0.95507 1.22875 0.95820 0.98564 0.95406 0.89508 1.21286 0.98336 0.94254 0.84449 1.44202 1.03487 1.83889 1.03563 1.21173 0.83220 0.98094 0.99588 1.18508 1.04810 1.10370 1.04789 0.95547 1.26072 0.95544 1.00925 0.98794 1.70068 1.05108 1.36774 1.47333 0.85888 0.78764 0.80657 0.77724 1.19257 1.24260 1.17736 1.21756 0.94711 0.92191 0.89154 0.94261 0.91526 0.90635 0.89897 0.93867 0.90673 0.91577 0.88718 0.85424 0.88472 0.75166 0.87931 0.89118 0.90648 0.85506 0.89809 0.94894 0.96433 0.95012 0.91887 0.93156 0.95201 0.95133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.43 9.18 71.98 0.66 -2.76 16 2 C -0.04 -1.24 3.26 -11.54 -0.04 -1.28 16 3 C -0.13 -3.26 9.18 71.98 0.66 -2.60 16 4 C 0.13 3.92 5.77 43.52 0.25 4.17 16 5 N -0.31 -8.28 12.50 -46.67 -0.58 -8.87 16 6 N -0.36 -6.57 3.98 -367.78 -1.46 -8.04 16 7 C 0.09 0.54 11.44 127.77 1.46 2.00 16 8 C 0.11 2.21 9.97 84.28 0.84 3.05 16 9 C -0.32 -9.83 6.10 -20.15 -0.12 -9.95 16 10 C 0.59 23.59 7.85 86.66 0.68 24.27 16 11 O -0.59 -29.94 14.82 -4.04 -0.06 -30.00 16 12 N -0.62 -21.90 3.33 -815.66 -2.71 -24.61 16 13 C 0.09 1.78 4.98 86.73 0.43 2.21 16 14 C -0.12 -2.47 6.42 31.78 0.20 -2.27 16 15 C -0.11 -3.42 3.29 -9.40 -0.03 -3.45 16 16 H 0.09 2.65 8.14 -2.38 -0.02 2.64 16 17 C 0.14 5.38 4.07 86.38 0.35 5.73 16 18 N -0.63 -28.80 2.41 -726.95 -1.75 -30.55 16 19 C 0.12 4.64 10.70 127.77 1.37 6.01 16 20 C -0.25 -14.70 8.94 84.03 0.75 -13.94 16 21 H 0.03 1.76 8.06 -2.91 -0.02 1.74 16 22 C -0.02 -1.00 5.29 84.86 0.45 -0.55 16 23 N -0.95 -61.61 13.97 21.65 0.30 -61.31 16 24 Si 0.94 45.67 25.09 68.60 1.72 47.39 16 25 H -0.27 -11.89 6.68 99.48 0.66 -11.22 16 26 H -0.31 -15.71 7.11 99.48 0.71 -15.00 16 27 H -0.25 -11.50 7.11 99.48 0.71 -10.79 16 28 C 0.14 6.30 5.36 86.86 0.47 6.77 16 29 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.08 3.20 5.60 -2.39 -0.01 3.19 16 33 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 37 H 0.13 -0.09 8.14 -2.39 -0.02 -0.11 16 38 H 0.10 0.58 8.14 -2.38 -0.02 0.56 16 39 H 0.23 2.38 4.42 -2.91 -0.01 2.36 16 40 H 0.10 1.37 6.87 -2.38 -0.02 1.36 16 41 H 0.09 1.42 6.99 -2.39 -0.02 1.40 16 42 H 0.07 1.63 8.04 -2.39 -0.02 1.61 16 43 H 0.13 1.51 8.14 -2.38 -0.02 1.49 16 44 H 0.08 2.54 8.07 -2.38 -0.02 2.52 16 45 H 0.03 1.41 3.34 -2.39 -0.01 1.40 16 46 H 0.02 0.62 8.14 -2.38 -0.02 0.61 16 47 H 0.03 1.25 8.00 -2.39 -0.02 1.23 16 48 H 0.06 1.90 8.10 -2.39 -0.02 1.88 16 49 H 0.26 16.05 8.31 -92.70 -0.77 15.28 16 50 H 0.03 1.56 8.00 -2.39 -0.02 1.54 16 51 H 0.03 1.61 8.03 -2.39 -0.02 1.59 16 Total: -1.00 -89.00 398.34 4.70 -84.30 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: 0.87 Total: 14.30 kcal Atomic # 6 Polarization: 9.00 SS G_CDS: 8.38 Total: 17.39 kcal Atomic # 7 Polarization: -127.16 SS G_CDS: -6.21 Total: -133.37 kcal Atomic # 8 Polarization: -29.94 SS G_CDS: -0.06 Total: -30.00 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 1.72 Total: 47.39 kcal Total: -89.00 4.70 -84.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664853720.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.138 kcal (2) G-P(sol) polarization free energy of solvation -89.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds