Wall clock time and date at job start Tue Mar 31 2020 20:06:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47054 * 2 1 4 4 C 1.50700 * 109.47100 * 119.99725 * 2 1 3 5 5 N 1.30501 * 125.65172 * 300.02918 * 4 2 1 6 6 C 1.34129 * 109.25567 * 179.97438 * 5 4 2 7 7 C 1.34665 * 108.01830 * 0.26542 * 6 5 4 8 8 N 1.35043 * 125.64882 * 119.99956 * 4 2 1 9 9 C 1.46506 * 126.39595 * 0.05838 * 8 4 2 10 10 C 1.50700 * 109.46916 * 84.99899 * 9 8 4 11 11 O 1.21287 * 120.00390 * 359.97438 * 10 9 8 12 12 N 1.34778 * 119.99871 * 180.02562 * 10 9 8 13 13 C 1.46505 * 119.99954 * 174.55213 * 12 10 9 14 14 C 1.52992 * 110.43527 * 302.94975 * 13 12 10 15 15 N 1.46503 * 109.47154 * 307.75241 * 14 13 12 16 16 C 1.36934 * 120.00154 * 174.97283 * 15 14 13 17 17 H 1.08002 * 119.99871 * 0.02562 * 16 15 14 18 18 C 1.38808 * 120.00093 * 180.02562 * 16 15 14 19 19 N 1.31624 * 120.00081 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 120.00115 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46910 * 60.00102 * 20 18 16 22 22 H 1.48500 * 109.47168 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47139 * 300.00091 * 20 18 16 24 24 C 1.54896 * 110.48242 * 180.40668 * 13 12 10 25 25 C 1.55234 * 102.58874 * 279.18788 * 24 13 12 26 26 C 1.54267 * 104.23417 * 322.08661 * 25 24 13 27 27 C 1.53878 * 106.59822 * 23.61045 * 26 25 24 28 28 H 1.09004 * 109.47492 * 300.00189 * 1 2 3 29 29 H 1.09002 * 109.47726 * 60.00166 * 1 2 3 30 30 H 1.09008 * 109.47107 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47272 * 240.00284 * 2 1 3 32 32 H 1.09004 * 109.47126 * 59.99587 * 3 2 1 33 33 H 1.08994 * 109.47358 * 180.02562 * 3 2 1 34 34 H 1.08999 * 109.47135 * 300.00751 * 3 2 1 35 35 H 1.08001 * 125.99100 * 179.97438 * 6 5 4 36 36 H 1.08006 * 126.59052 * 179.69734 * 7 6 5 37 37 H 1.08995 * 109.46959 * 204.99264 * 9 8 4 38 38 H 1.08999 * 109.46917 * 325.00156 * 9 8 4 39 39 H 0.96995 * 119.99896 * 354.54866 * 12 10 9 40 40 H 1.08998 * 109.47362 * 67.75561 * 14 13 12 41 41 H 1.08996 * 109.47118 * 187.75921 * 14 13 12 42 42 H 0.97006 * 119.99834 * 354.97776 * 15 14 13 43 43 H 0.97002 * 119.99791 * 180.02562 * 19 18 16 44 44 H 1.08996 * 110.75482 * 37.57989 * 24 13 12 45 45 H 1.08999 * 110.74982 * 160.95275 * 24 13 12 46 46 H 1.08997 * 110.46809 * 203.39968 * 25 24 13 47 47 H 1.08999 * 110.47024 * 80.77493 * 25 24 13 48 48 H 1.09003 * 110.03357 * 264.32969 * 26 25 24 49 49 H 1.08998 * 110.03888 * 142.89786 * 26 25 24 50 50 H 1.08999 * 110.03441 * 240.71970 * 27 26 25 51 51 H 1.08997 * 110.03285 * 119.28659 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2305 5 7 1.7855 -0.3622 2.4638 6 6 2.3926 -1.2214 3.2958 7 6 3.0450 -2.1332 2.5499 8 7 2.8120 -1.8129 1.2396 9 6 3.3194 -2.5286 0.0662 10 6 4.5918 -1.8757 -0.4088 11 8 5.0313 -0.9076 0.1749 12 7 5.2409 -2.3669 -1.4830 13 6 6.4099 -1.6638 -2.0172 14 6 6.0458 -0.2237 -2.3836 15 7 4.8684 -0.2244 -3.2554 16 6 4.2938 0.9605 -3.6310 17 1 4.7089 1.8956 -3.2848 18 6 3.1779 0.9598 -4.4566 19 7 2.6724 -0.1798 -4.8788 20 14 2.3936 2.5762 -4.9683 21 1 3.3867 3.3958 -5.7081 22 1 1.2259 2.3042 -5.8445 23 1 1.9453 3.3134 -3.7597 24 6 6.9747 -2.4108 -3.2510 25 6 7.8161 -3.5439 -2.6044 26 6 8.4601 -2.8807 -1.3695 27 6 7.5661 -1.6853 -0.9961 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.6766 1.9564 0.8900 33 1 3.1299 1.4426 -0.0005 34 1 1.6765 1.9564 -0.8899 35 1 2.3670 -1.1852 4.3749 36 1 3.6367 -2.9596 2.9152 37 1 3.5209 -3.5661 0.3325 38 1 2.5751 -2.4955 -0.7294 39 1 4.9341 -3.1859 -1.9024 40 1 5.8253 0.3376 -1.4756 41 1 6.8829 0.2416 -2.9041 42 1 4.4958 -1.0642 -3.5665 43 1 1.8928 -0.1802 -5.4561 44 1 6.1672 -2.8230 -3.8560 45 1 7.6068 -1.7514 -3.8457 46 1 8.5844 -3.8900 -3.2957 47 1 7.1734 -4.3706 -2.3018 48 1 9.4645 -2.5341 -1.6130 49 1 8.4997 -3.5899 -0.5427 50 1 8.1365 -0.7585 -1.0585 51 1 7.1717 -1.8144 0.0118 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001665951132.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:36 Heat of formation + Delta-G solvation = 26.956597 kcal Electronic energy + Delta-G solvation = -31341.526981 eV Core-core repulsion = 27469.793929 eV Total energy + Delta-G solvation = -3871.733052 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.94667 -40.06275 -37.61913 -34.91177 -34.37403 -33.74500 -33.13187 -31.10803 -28.87122 -28.63137 -28.40212 -27.08111 -26.67175 -24.52853 -22.54309 -22.24794 -21.56945 -20.79223 -20.39162 -19.10294 -18.78348 -17.32166 -17.15658 -16.90737 -15.86206 -15.41307 -14.93917 -14.71444 -14.61544 -14.38725 -14.14088 -13.88396 -13.44396 -13.35132 -13.25420 -13.13659 -12.97216 -12.74285 -12.46319 -12.29702 -12.12173 -11.67392 -11.44825 -11.35206 -11.15172 -11.07646 -10.98305 -10.81784 -10.75020 -10.72330 -10.48202 -10.47035 -10.39244 -10.08694 -9.90513 -9.70224 -9.65675 -9.14273 -8.81062 -8.66476 -8.05689 -6.88913 -5.77146 -3.03093 2.21000 2.80293 2.85793 3.43508 3.44469 3.48750 3.50536 3.52867 4.53900 4.63783 4.68707 4.71119 4.76200 4.83511 4.93402 4.99487 5.05336 5.37253 5.44831 5.53638 5.53759 5.56779 5.58950 5.61364 5.68626 5.84516 5.86272 5.89479 5.91032 5.95083 6.13202 6.13812 6.20128 6.24058 6.26699 6.35444 6.36279 6.41479 6.48676 6.54209 6.56700 6.69044 6.82011 6.87732 7.02989 7.03919 7.38261 7.71870 7.75823 8.41492 8.42278 8.47255 9.54543 10.10565 10.47457 11.45735 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.007335 B = 0.006710 C = 0.003861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3816.559783 B = 4171.910295 C = 7249.420312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.009 4.009 3 C -0.129 4.129 4 C 0.244 3.756 5 N -0.493 5.493 6 C -0.030 4.030 7 C -0.062 4.062 8 N -0.438 5.438 9 C 0.081 3.919 10 C 0.508 3.492 11 O -0.511 6.511 12 N -0.704 5.704 13 C 0.172 3.828 14 C 0.145 3.855 15 N -0.723 5.723 16 C -0.227 4.227 17 H 0.066 0.934 18 C -0.011 4.011 19 N -0.936 5.936 20 Si 0.899 3.101 21 H -0.288 1.288 22 H -0.292 1.292 23 H -0.285 1.285 24 C -0.118 4.118 25 C -0.125 4.125 26 C -0.122 4.122 27 C -0.123 4.123 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.048 0.952 31 H 0.087 0.913 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.164 0.836 36 H 0.167 0.833 37 H 0.114 0.886 38 H 0.123 0.877 39 H 0.396 0.604 40 H 0.044 0.956 41 H 0.020 0.980 42 H 0.381 0.619 43 H 0.253 0.747 44 H 0.076 0.924 45 H 0.084 0.916 46 H 0.064 0.936 47 H 0.061 0.939 48 H 0.061 0.939 49 H 0.057 0.943 50 H 0.071 0.929 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.564 -10.931 8.978 14.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.029 4.029 3 C -0.188 4.188 4 C -0.019 4.019 5 N -0.211 5.211 6 C -0.178 4.178 7 C -0.194 4.194 8 N -0.120 5.120 9 C -0.046 4.046 10 C 0.291 3.709 11 O -0.385 6.385 12 N -0.356 5.356 13 C 0.086 3.914 14 C 0.017 3.983 15 N -0.367 5.367 16 C -0.359 4.359 17 H 0.084 0.916 18 C -0.206 4.206 19 N -0.586 5.586 20 Si 0.730 3.270 21 H -0.215 1.215 22 H -0.218 1.218 23 H -0.211 1.211 24 C -0.156 4.156 25 C -0.163 4.163 26 C -0.160 4.160 27 C -0.162 4.162 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.105 0.895 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.182 0.818 36 H 0.184 0.816 37 H 0.132 0.868 38 H 0.141 0.859 39 H 0.230 0.770 40 H 0.062 0.938 41 H 0.038 0.962 42 H 0.214 0.786 43 H 0.063 0.937 44 H 0.095 0.905 45 H 0.103 0.897 46 H 0.082 0.918 47 H 0.080 0.920 48 H 0.080 0.920 49 H 0.076 0.924 50 H 0.089 0.911 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.431 -9.438 9.533 14.127 hybrid contribution -0.084 -0.629 -0.893 1.096 sum 4.347 -10.067 8.640 13.960 Atomic orbital electron populations 1.21756 0.93642 1.01502 1.02482 1.19561 0.95910 0.96625 0.90781 1.21639 1.01893 0.93556 1.01666 1.23335 0.95396 0.87509 0.95620 1.70195 1.25080 1.26784 0.99048 1.22149 1.01666 0.94707 0.99268 1.22488 1.08621 1.05402 0.82868 1.44844 1.38178 1.23366 1.05621 1.21704 0.96852 0.96873 0.89155 1.20325 0.84946 0.84671 0.80930 1.90741 1.66399 1.25750 1.55610 1.45717 1.30881 1.28126 1.30905 1.21384 0.84112 0.93529 0.92381 1.21047 0.90880 0.91735 0.94622 1.42158 1.31160 1.06251 1.57135 1.19139 1.07495 0.86150 1.23067 0.91597 1.24596 0.98748 0.96467 1.00825 1.69622 1.25604 1.23752 1.39616 0.86390 0.78783 0.83583 0.78256 1.21467 1.21774 1.21143 1.22795 0.99531 0.97038 0.96275 1.22460 0.99051 0.97819 0.96930 1.22134 0.98976 0.97337 0.97564 1.22438 0.95786 0.98330 0.99685 0.91849 0.91713 0.93287 0.89466 0.92563 0.92090 0.91745 0.81835 0.81568 0.86786 0.85901 0.77045 0.93820 0.96224 0.78557 0.93699 0.90509 0.89742 0.91754 0.91987 0.92029 0.92430 0.91057 0.90986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 9.17 37.16 0.34 -1.75 16 2 C -0.01 -0.15 3.25 -91.77 -0.30 -0.45 16 3 C -0.13 -2.45 9.18 37.16 0.34 -2.11 16 4 C 0.24 4.27 6.40 -155.41 -0.99 3.28 16 5 N -0.49 -8.87 11.25 -10.82 -0.12 -9.00 16 6 C -0.03 -0.46 11.87 -17.81 -0.21 -0.67 16 7 C -0.06 -0.86 11.58 -16.56 -0.19 -1.05 16 8 N -0.44 -6.67 2.24 -115.19 -0.26 -6.93 16 9 C 0.08 1.04 6.17 -5.19 -0.03 1.00 16 10 C 0.51 7.90 7.14 -10.98 -0.08 7.82 16 11 O -0.51 -10.02 13.38 5.55 0.07 -9.94 16 12 N -0.70 -9.69 4.54 -46.07 -0.21 -9.90 16 13 C 0.17 2.59 0.39 -130.16 -0.05 2.54 16 14 C 0.15 2.92 4.72 -4.04 -0.02 2.90 16 15 N -0.72 -17.00 5.30 -59.91 -0.32 -17.31 16 16 C -0.23 -6.12 9.99 -15.06 -0.15 -6.27 16 17 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 18 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 19 N -0.94 -26.46 13.06 55.49 0.72 -25.74 16 20 Si 0.90 22.05 29.55 -169.99 -5.02 17.03 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 22 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 23 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 24 C -0.12 -1.56 5.67 -24.55 -0.14 -1.70 16 25 C -0.12 -1.29 6.80 -24.88 -0.17 -1.46 16 26 C -0.12 -1.33 6.80 -25.61 -0.17 -1.50 16 27 C -0.12 -1.70 5.68 -25.61 -0.15 -1.84 16 28 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.05 0.69 8.14 -51.92 -0.42 0.27 16 31 H 0.09 1.66 6.85 -51.93 -0.36 1.31 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.16 2.00 8.06 -52.49 -0.42 1.57 16 36 H 0.17 1.72 8.06 -52.48 -0.42 1.30 16 37 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.12 1.53 7.28 -51.93 -0.38 1.15 16 39 H 0.40 4.38 8.50 -40.82 -0.35 4.03 16 40 H 0.04 1.00 6.49 -51.93 -0.34 0.67 16 41 H 0.02 0.41 8.02 -51.93 -0.42 -0.01 16 42 H 0.38 9.12 7.27 -40.82 -0.30 8.83 16 43 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 44 H 0.08 1.05 8.10 -51.93 -0.42 0.63 16 45 H 0.08 1.18 7.97 -51.93 -0.41 0.76 16 46 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 48 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 49 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 50 H 0.07 1.02 7.84 -51.93 -0.41 0.61 16 51 H 0.07 1.10 6.62 -51.93 -0.34 0.75 16 LS Contribution 407.71 15.07 6.14 6.14 Total: -1.00 -32.91 407.71 -9.81 -42.72 By element: Atomic # 1 Polarization: 23.35 SS G_CDS: -8.76 Total: 14.59 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: -2.07 Total: -1.66 kcal Atomic # 7 Polarization: -68.70 SS G_CDS: -0.18 Total: -68.88 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.07 Total: -9.94 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -32.91 -9.81 -42.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665951132.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.680 kcal (2) G-P(sol) polarization free energy of solvation -32.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds