Wall clock time and date at job start Tue Mar 31 2020 20:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47054 * 2 1 4 4 C 1.50700 * 109.47100 * 119.99725 * 2 1 3 5 5 N 1.30501 * 125.65172 * 300.02918 * 4 2 1 6 6 C 1.34129 * 109.25567 * 179.97438 * 5 4 2 7 7 C 1.34665 * 108.01830 * 0.26542 * 6 5 4 8 8 N 1.35043 * 125.64882 * 119.99956 * 4 2 1 9 9 C 1.46506 * 126.39595 * 0.05838 * 8 4 2 10 10 C 1.50700 * 109.46916 * 84.99899 * 9 8 4 11 11 O 1.21287 * 120.00390 * 359.97438 * 10 9 8 12 12 N 1.34778 * 119.99871 * 180.02562 * 10 9 8 13 13 C 1.46505 * 119.99954 * 174.55213 * 12 10 9 14 14 C 1.52992 * 110.43527 * 302.94975 * 13 12 10 15 15 N 1.46503 * 109.47154 * 307.75241 * 14 13 12 16 16 C 1.36934 * 120.00154 * 174.97283 * 15 14 13 17 17 H 1.08002 * 119.99871 * 0.02562 * 16 15 14 18 18 C 1.38808 * 120.00093 * 180.02562 * 16 15 14 19 19 N 1.31624 * 120.00081 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 120.00115 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46910 * 60.00102 * 20 18 16 22 22 H 1.48500 * 109.47168 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47139 * 300.00091 * 20 18 16 24 24 C 1.54896 * 110.48242 * 180.40668 * 13 12 10 25 25 C 1.55234 * 102.58874 * 279.18788 * 24 13 12 26 26 C 1.54267 * 104.23417 * 322.08661 * 25 24 13 27 27 C 1.53878 * 106.59822 * 23.61045 * 26 25 24 28 28 H 1.09004 * 109.47492 * 300.00189 * 1 2 3 29 29 H 1.09002 * 109.47726 * 60.00166 * 1 2 3 30 30 H 1.09008 * 109.47107 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47272 * 240.00284 * 2 1 3 32 32 H 1.09004 * 109.47126 * 59.99587 * 3 2 1 33 33 H 1.08994 * 109.47358 * 180.02562 * 3 2 1 34 34 H 1.08999 * 109.47135 * 300.00751 * 3 2 1 35 35 H 1.08001 * 125.99100 * 179.97438 * 6 5 4 36 36 H 1.08006 * 126.59052 * 179.69734 * 7 6 5 37 37 H 1.08995 * 109.46959 * 204.99264 * 9 8 4 38 38 H 1.08999 * 109.46917 * 325.00156 * 9 8 4 39 39 H 0.96995 * 119.99896 * 354.54866 * 12 10 9 40 40 H 1.08998 * 109.47362 * 67.75561 * 14 13 12 41 41 H 1.08996 * 109.47118 * 187.75921 * 14 13 12 42 42 H 0.97006 * 119.99834 * 354.97776 * 15 14 13 43 43 H 0.97002 * 119.99791 * 180.02562 * 19 18 16 44 44 H 1.08996 * 110.75482 * 37.57989 * 24 13 12 45 45 H 1.08999 * 110.74982 * 160.95275 * 24 13 12 46 46 H 1.08997 * 110.46809 * 203.39968 * 25 24 13 47 47 H 1.08999 * 110.47024 * 80.77493 * 25 24 13 48 48 H 1.09003 * 110.03357 * 264.32969 * 26 25 24 49 49 H 1.08998 * 110.03888 * 142.89786 * 26 25 24 50 50 H 1.08999 * 110.03441 * 240.71970 * 27 26 25 51 51 H 1.08997 * 110.03285 * 119.28659 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2305 5 7 1.7855 -0.3622 2.4638 6 6 2.3926 -1.2214 3.2958 7 6 3.0450 -2.1332 2.5499 8 7 2.8120 -1.8129 1.2396 9 6 3.3194 -2.5286 0.0662 10 6 4.5918 -1.8757 -0.4088 11 8 5.0313 -0.9076 0.1749 12 7 5.2409 -2.3669 -1.4830 13 6 6.4099 -1.6638 -2.0172 14 6 6.0458 -0.2237 -2.3836 15 7 4.8684 -0.2244 -3.2554 16 6 4.2938 0.9605 -3.6310 17 1 4.7089 1.8956 -3.2848 18 6 3.1779 0.9598 -4.4566 19 7 2.6724 -0.1798 -4.8788 20 14 2.3936 2.5762 -4.9683 21 1 3.3867 3.3958 -5.7081 22 1 1.2259 2.3042 -5.8445 23 1 1.9453 3.3134 -3.7597 24 6 6.9747 -2.4108 -3.2510 25 6 7.8161 -3.5439 -2.6044 26 6 8.4601 -2.8807 -1.3695 27 6 7.5661 -1.6853 -0.9961 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.6766 1.9564 0.8900 33 1 3.1299 1.4426 -0.0005 34 1 1.6765 1.9564 -0.8899 35 1 2.3670 -1.1852 4.3749 36 1 3.6367 -2.9596 2.9152 37 1 3.5209 -3.5661 0.3325 38 1 2.5751 -2.4955 -0.7294 39 1 4.9341 -3.1859 -1.9024 40 1 5.8253 0.3376 -1.4756 41 1 6.8829 0.2416 -2.9041 42 1 4.4958 -1.0642 -3.5665 43 1 1.8928 -0.1802 -5.4561 44 1 6.1672 -2.8230 -3.8560 45 1 7.6068 -1.7514 -3.8457 46 1 8.5844 -3.8900 -3.2957 47 1 7.1734 -4.3706 -2.3018 48 1 9.4645 -2.5341 -1.6130 49 1 8.4997 -3.5899 -0.5427 50 1 8.1365 -0.7585 -1.0585 51 1 7.1717 -1.8144 0.0118 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001665951132.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:34 Heat of formation + Delta-G solvation = 6.699250 kcal Electronic energy + Delta-G solvation = -31342.405406 eV Core-core repulsion = 27469.793929 eV Total energy + Delta-G solvation = -3872.611476 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.12685 -41.29619 -38.82727 -36.29620 -36.16020 -34.94233 -34.40319 -32.98412 -30.18632 -29.72739 -29.63462 -28.31665 -28.10184 -26.24646 -24.00383 -23.84661 -22.74328 -21.94476 -21.37723 -20.41703 -20.05352 -19.11086 -18.50335 -18.11712 -17.14983 -16.64133 -16.37226 -16.09244 -15.91525 -15.62035 -15.57224 -15.24288 -15.06205 -14.75062 -14.59996 -14.38045 -14.30292 -14.04973 -13.84710 -13.72600 -13.35505 -13.13952 -13.08229 -12.81060 -12.51385 -12.42586 -12.38971 -12.20100 -12.17317 -12.10300 -11.92104 -11.90256 -11.74292 -11.67420 -11.31838 -11.19533 -10.91018 -10.87686 -10.32334 -9.93583 -9.22127 -8.91354 -7.91798 -5.16272 1.03262 1.45420 1.46513 1.52136 1.61708 1.75017 2.24389 2.35500 2.56773 3.40320 3.42937 3.50563 3.67769 3.70325 3.77215 3.81250 3.95091 4.08018 4.12644 4.18506 4.19131 4.36272 4.40895 4.54767 4.59455 4.61471 4.68767 4.72888 4.74006 4.82784 4.86490 4.88697 4.89459 4.92722 5.06824 5.08609 5.12088 5.17057 5.21573 5.27499 5.29973 5.34632 5.43867 5.49266 5.52255 5.71990 5.92410 6.18133 6.30702 6.62553 7.21120 7.31382 7.40018 8.11018 8.42948 9.30138 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.007335 B = 0.006710 C = 0.003861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3816.559783 B = 4171.910295 C = 7249.420312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.004 4.004 3 C -0.118 4.118 4 C 0.217 3.783 5 N -0.520 5.520 6 C -0.055 4.055 7 C -0.047 4.047 8 N -0.440 5.440 9 C 0.082 3.918 10 C 0.503 3.497 11 O -0.558 6.558 12 N -0.693 5.693 13 C 0.176 3.824 14 C 0.149 3.851 15 N -0.721 5.721 16 C -0.237 4.237 17 H 0.053 0.947 18 C -0.052 4.052 19 N -0.954 5.954 20 Si 0.948 3.052 21 H -0.285 1.285 22 H -0.289 1.289 23 H -0.285 1.285 24 C -0.116 4.116 25 C -0.112 4.112 26 C -0.114 4.114 27 C -0.118 4.118 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.026 0.974 34 H 0.054 0.946 35 H 0.188 0.812 36 H 0.208 0.792 37 H 0.166 0.834 38 H 0.125 0.875 39 H 0.412 0.588 40 H 0.010 0.990 41 H 0.013 0.987 42 H 0.379 0.621 43 H 0.251 0.749 44 H 0.073 0.927 45 H 0.073 0.927 46 H 0.082 0.918 47 H 0.080 0.920 48 H 0.071 0.929 49 H 0.073 0.927 50 H 0.056 0.944 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.062 -13.710 9.438 17.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.024 4.024 3 C -0.176 4.176 4 C -0.046 4.046 5 N -0.239 5.239 6 C -0.202 4.202 7 C -0.179 4.179 8 N -0.121 5.121 9 C -0.044 4.044 10 C 0.288 3.712 11 O -0.435 6.435 12 N -0.346 5.346 13 C 0.089 3.911 14 C 0.021 3.979 15 N -0.364 5.364 16 C -0.369 4.369 17 H 0.071 0.929 18 C -0.245 4.245 19 N -0.604 5.604 20 Si 0.778 3.222 21 H -0.212 1.212 22 H -0.215 1.215 23 H -0.211 1.211 24 C -0.154 4.154 25 C -0.150 4.150 26 C -0.152 4.152 27 C -0.157 4.157 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.046 0.954 34 H 0.073 0.927 35 H 0.205 0.795 36 H 0.224 0.776 37 H 0.184 0.816 38 H 0.143 0.857 39 H 0.249 0.751 40 H 0.028 0.972 41 H 0.031 0.969 42 H 0.213 0.787 43 H 0.060 0.940 44 H 0.091 0.909 45 H 0.092 0.908 46 H 0.101 0.899 47 H 0.099 0.901 48 H 0.089 0.911 49 H 0.092 0.908 50 H 0.075 0.925 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.942 -12.249 9.974 16.552 hybrid contribution -0.172 0.296 -0.989 1.046 sum 4.770 -11.954 8.986 15.697 Atomic orbital electron populations 1.21676 0.91908 1.02405 1.02472 1.19407 0.97311 0.95148 0.90577 1.21503 0.99500 0.95189 1.01451 1.23125 0.97214 0.88987 0.95258 1.70115 1.26118 1.27961 0.99693 1.22690 1.02150 0.94849 1.00480 1.23156 1.07226 1.05549 0.81950 1.44986 1.37465 1.22840 1.06829 1.21929 0.95003 0.98756 0.88694 1.20877 0.85565 0.84069 0.80697 1.90734 1.67792 1.27798 1.57184 1.45604 1.30329 1.28366 1.30265 1.21240 0.85028 0.90733 0.94091 1.21040 0.89229 0.95322 0.92298 1.42130 1.31856 1.05111 1.57347 1.19294 1.07784 0.86914 1.22888 0.92917 1.25122 0.99248 0.98918 1.01242 1.69715 1.25780 1.24874 1.40064 0.85606 0.77989 0.80832 0.77764 1.21196 1.21521 1.21115 1.22751 0.99687 0.97760 0.95173 1.22419 0.99170 0.96850 0.96525 1.22097 0.98604 0.96101 0.98391 1.22357 0.95569 0.99436 0.98367 0.91745 0.91697 0.91923 0.91476 0.91868 0.95444 0.92654 0.79480 0.77563 0.81634 0.85698 0.75118 0.97168 0.96944 0.78729 0.94007 0.90868 0.90839 0.89922 0.90140 0.91057 0.90815 0.92472 0.92424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.90 9.17 71.98 0.66 -3.24 16 2 C 0.00 -0.15 3.25 -11.54 -0.04 -0.19 16 3 C -0.12 -4.73 9.18 71.98 0.66 -4.07 16 4 C 0.22 7.60 6.40 138.13 0.88 8.48 16 5 N -0.52 -18.63 11.25 -188.13 -2.12 -20.74 16 6 C -0.05 -1.59 11.87 83.52 0.99 -0.60 16 7 C -0.05 -1.18 11.58 83.09 0.96 -0.22 16 8 N -0.44 -12.79 2.24 -518.33 -1.16 -13.95 16 9 C 0.08 1.93 6.17 85.63 0.53 2.46 16 10 C 0.50 15.36 7.14 87.66 0.63 15.98 16 11 O -0.56 -22.43 13.38 -3.05 -0.04 -22.48 16 12 N -0.69 -18.33 4.54 -418.05 -1.90 -20.23 16 13 C 0.18 5.24 0.39 4.68 0.00 5.24 16 14 C 0.15 6.23 4.72 86.38 0.41 6.64 16 15 N -0.72 -34.90 5.30 -343.47 -1.82 -36.72 16 16 C -0.24 -13.14 9.99 84.03 0.84 -12.30 16 17 H 0.05 3.01 7.83 -2.91 -0.02 2.99 16 18 C -0.05 -2.88 5.50 84.86 0.47 -2.41 16 19 N -0.95 -54.24 13.06 21.65 0.28 -53.96 16 20 Si 0.95 45.91 29.55 68.60 2.03 47.94 16 21 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 22 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 23 H -0.28 -13.67 7.11 99.48 0.71 -12.96 16 24 C -0.12 -2.87 5.67 32.01 0.18 -2.69 16 25 C -0.11 -1.92 6.80 31.79 0.22 -1.70 16 26 C -0.11 -2.15 6.80 31.32 0.21 -1.93 16 27 C -0.12 -3.18 5.68 31.32 0.18 -3.01 16 28 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 29 H 0.06 1.95 8.14 -2.39 -0.02 1.94 16 30 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 31 H 0.07 2.66 6.85 -2.39 -0.02 2.65 16 32 H 0.06 2.37 8.14 -2.38 -0.02 2.35 16 33 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.19 4.22 8.06 -2.91 -0.02 4.20 16 36 H 0.21 3.35 8.06 -2.91 -0.02 3.33 16 37 H 0.17 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.13 2.94 7.28 -2.39 -0.02 2.92 16 39 H 0.41 8.17 8.50 -92.71 -0.79 7.38 16 40 H 0.01 0.50 6.49 -2.39 -0.02 0.49 16 41 H 0.01 0.55 8.02 -2.39 -0.02 0.53 16 42 H 0.38 18.43 7.27 -92.70 -0.67 17.76 16 43 H 0.25 14.00 8.31 -92.71 -0.77 13.23 16 44 H 0.07 1.88 8.10 -2.39 -0.02 1.86 16 45 H 0.07 1.99 7.97 -2.39 -0.02 1.97 16 46 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 47 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 48 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 49 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 50 H 0.06 1.67 7.84 -2.39 -0.02 1.65 16 51 H 0.06 1.73 6.62 -2.39 -0.02 1.71 16 Total: -1.00 -74.44 407.71 2.51 -71.93 By element: Atomic # 1 Polarization: 42.32 SS G_CDS: -0.54 Total: 41.78 kcal Atomic # 6 Polarization: -1.34 SS G_CDS: 7.78 Total: 6.44 kcal Atomic # 7 Polarization: -138.89 SS G_CDS: -6.72 Total: -145.61 kcal Atomic # 8 Polarization: -22.43 SS G_CDS: -0.04 Total: -22.48 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Total: -74.44 2.51 -71.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665951132.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.631 kcal (2) G-P(sol) polarization free energy of solvation -74.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds