Wall clock time and date at job start Tue Mar 31 2020 18:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50701 * 109.46852 * 2 1 4 4 C 1.35367 * 126.38325 * 85.00203 * 3 2 1 5 5 C 1.41509 * 105.49955 * 180.02562 * 4 3 2 6 6 C 1.47710 * 126.51626 * 180.02562 * 5 4 3 7 7 O 1.21575 * 120.00277 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00055 * 179.97438 * 6 5 4 9 9 C 1.46505 * 120.00181 * 176.44055 * 8 6 5 10 10 C 1.53002 * 109.46936 * 314.08402 * 9 8 6 11 11 N 1.46501 * 109.46943 * 304.57693 * 10 9 8 12 12 C 1.36931 * 119.99660 * 185.74521 * 11 10 9 13 13 H 1.08000 * 120.00708 * 0.02562 * 12 11 10 14 14 C 1.38823 * 119.99738 * 180.02562 * 12 11 10 15 15 N 1.31618 * 120.00016 * 180.02562 * 14 12 11 16 16 Si 1.86803 * 120.00047 * 0.02562 * 14 12 11 17 17 H 1.48496 * 109.47090 * 89.99794 * 16 14 12 18 18 H 1.48500 * 109.46836 * 210.00405 * 16 14 12 19 19 H 1.48500 * 109.47081 * 330.00062 * 16 14 12 20 20 C 1.52995 * 109.47183 * 194.08119 * 9 8 6 21 21 C 1.53001 * 109.47101 * 300.00198 * 20 9 8 22 22 C 1.52999 * 109.47254 * 299.99632 * 21 20 9 23 23 C 1.53008 * 109.46778 * 60.00032 * 22 21 20 24 24 C 1.52995 * 109.47065 * 300.00286 * 23 22 21 25 25 H 1.09000 * 109.46936 * 299.99515 * 24 23 22 26 26 C 1.53008 * 109.47065 * 180.02562 * 24 23 22 27 27 N 1.31811 * 106.96409 * 359.97438 * 5 4 3 28 28 N 1.28467 * 110.07218 * 359.72218 * 27 5 4 29 29 H 0.97000 * 124.88202 * 180.30353 * 28 27 5 30 30 H 1.09002 * 109.47042 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47436 * 299.99489 * 1 2 3 32 32 H 1.08995 * 109.47507 * 59.99910 * 1 2 3 33 33 H 1.09003 * 109.47396 * 119.99771 * 2 1 3 34 34 H 1.08993 * 109.47184 * 240.00408 * 2 1 3 35 35 H 1.07993 * 127.25098 * 359.97438 * 4 3 2 36 36 H 0.97003 * 120.00035 * 356.43917 * 8 6 5 37 37 H 1.08995 * 109.47406 * 64.58060 * 10 9 8 38 38 H 1.08998 * 109.46375 * 184.58086 * 10 9 8 39 39 H 0.96997 * 119.99915 * 5.74779 * 11 10 9 40 40 H 0.97000 * 119.99928 * 179.97438 * 15 14 12 41 41 H 1.09002 * 109.47426 * 60.00028 * 20 9 8 42 42 H 1.09000 * 109.46961 * 180.02562 * 20 9 8 43 43 H 1.09001 * 109.47530 * 59.99905 * 21 20 9 44 44 H 1.09005 * 109.47071 * 180.02562 * 21 20 9 45 45 H 1.08995 * 109.47584 * 179.97438 * 22 21 20 46 46 H 1.09000 * 109.47549 * 300.00317 * 22 21 20 47 47 H 1.09001 * 109.46893 * 60.00409 * 23 22 21 48 48 H 1.08997 * 109.47242 * 179.97438 * 23 22 21 49 49 H 1.09004 * 109.46766 * 306.89578 * 26 24 23 50 50 H 1.08997 * 109.47017 * 66.89078 * 26 24 23 51 51 H 1.08997 * 109.47170 * 186.89512 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.2103 2.2096 1.0857 5 6 2.6918 3.4416 0.5831 6 6 3.0415 4.6379 1.3759 7 8 2.9237 4.6211 2.5858 8 7 3.4911 5.7481 0.7580 9 6 3.7637 6.9596 1.5354 10 6 2.6033 7.2198 2.4980 11 7 1.3493 7.2890 1.7437 12 6 0.1859 7.6315 2.3795 13 1 0.1928 7.8509 3.4370 14 6 -1.0025 7.6966 1.6649 15 7 -2.1206 8.0262 2.2759 16 14 -1.0146 7.3163 -0.1640 17 1 -1.2614 5.8661 -0.3664 18 1 -2.0899 8.0986 -0.8250 19 1 0.2980 7.6821 -0.7543 20 6 3.9165 8.1504 0.5870 21 6 5.0769 7.8901 -0.3756 22 6 6.3693 7.7043 0.4219 23 6 6.2165 6.5134 1.3704 24 6 5.0561 6.7737 2.3329 25 1 5.2590 7.6751 2.9113 26 6 4.9037 5.5831 3.2818 27 7 2.7701 3.3184 -0.7269 28 7 2.3943 2.1425 -1.0824 29 1 2.3713 1.8203 -1.9970 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 1.8933 -0.5137 -0.8900 35 1 2.0235 1.9529 2.1179 36 1 3.6342 5.7449 -0.2014 37 1 2.5457 6.4098 3.2250 38 1 2.7672 8.1637 3.0178 39 1 1.3432 7.0923 0.7939 40 1 -2.9509 8.0720 1.7765 41 1 2.9958 8.2828 0.0187 42 1 4.1198 9.0517 1.1653 43 1 4.8741 6.9887 -0.9540 44 1 5.1861 8.7387 -1.0510 45 1 7.1959 7.5185 -0.2638 46 1 6.5722 8.6057 1.0003 47 1 6.0137 5.6121 0.7920 48 1 7.1373 6.3807 1.9383 49 1 4.8234 4.6639 2.7014 50 1 5.7743 5.5254 3.9350 51 1 4.0048 5.7118 3.8847 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001666051476.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:32 Heat of formation + Delta-G solvation = 50.711603 kcal Electronic energy + Delta-G solvation = -31278.427966 eV Core-core repulsion = 27407.725008 eV Total energy + Delta-G solvation = -3870.702957 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.64475 -40.62107 -37.59460 -34.69134 -34.49427 -33.17277 -32.55424 -31.77438 -31.12145 -29.74710 -29.20266 -26.46092 -25.08752 -24.14796 -23.89074 -22.53276 -21.11670 -21.03046 -20.55532 -20.01653 -18.77491 -17.69006 -17.46514 -16.88687 -15.99284 -15.51182 -14.99566 -14.66244 -14.48571 -14.33711 -14.28802 -13.89373 -13.76080 -13.56800 -13.52359 -13.33862 -12.80920 -12.65013 -12.57189 -12.32183 -11.87456 -11.80710 -11.75859 -11.52751 -11.41701 -11.32353 -11.21640 -10.92390 -10.79992 -10.76832 -10.72399 -10.36876 -10.12855 -9.96300 -9.65295 -9.46258 -9.38069 -9.19377 -8.95437 -8.63829 -8.34508 -6.98720 -5.63476 -2.94777 1.73252 2.18394 2.82780 3.42181 3.46560 3.49510 3.51227 3.83663 4.43110 4.55314 4.69976 4.73434 4.85833 4.86029 4.89521 5.01187 5.22424 5.25026 5.27823 5.36435 5.48200 5.56462 5.61879 5.64256 5.66690 5.68788 5.70935 5.74637 5.80567 5.92425 5.94841 6.00929 6.07457 6.09818 6.15874 6.24469 6.29237 6.38240 6.42617 6.44953 6.53945 6.61922 6.66670 6.83806 6.96479 7.09400 7.26351 7.79902 8.06295 8.15881 8.55887 8.71097 9.37145 10.09975 10.31377 11.55876 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.007664 B = 0.006003 C = 0.004035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3652.596664 B = 4663.349214 C = 6937.060781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.051 4.051 3 C 0.010 3.990 4 C -0.173 4.173 5 C 0.001 3.999 6 C 0.601 3.399 7 O -0.501 6.501 8 N -0.704 5.704 9 C 0.176 3.824 10 C 0.136 3.864 11 N -0.749 5.749 12 C -0.225 4.225 13 H 0.089 0.911 14 C 0.000 4.000 15 N -0.939 5.939 16 Si 0.881 3.119 17 H -0.289 1.289 18 H -0.293 1.293 19 H -0.280 1.280 20 C -0.120 4.120 21 C -0.121 4.121 22 C -0.118 4.118 23 C -0.111 4.111 24 C -0.091 4.091 25 H 0.075 0.925 26 C -0.141 4.141 27 N -0.266 5.266 28 N -0.384 5.384 29 H 0.441 0.559 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.054 0.946 33 H 0.090 0.910 34 H 0.072 0.928 35 H 0.162 0.838 36 H 0.398 0.602 37 H 0.071 0.929 38 H 0.030 0.970 39 H 0.358 0.642 40 H 0.256 0.744 41 H 0.075 0.925 42 H 0.079 0.921 43 H 0.058 0.942 44 H 0.062 0.938 45 H 0.056 0.944 46 H 0.061 0.939 47 H 0.060 0.940 48 H 0.057 0.943 49 H 0.059 0.941 50 H 0.029 0.971 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.375 -13.179 -8.113 22.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.090 4.090 3 C -0.115 4.115 4 C -0.201 4.201 5 C -0.161 4.161 6 C 0.385 3.615 7 O -0.374 6.374 8 N -0.356 5.356 9 C 0.091 3.909 10 C 0.009 3.991 11 N -0.394 5.394 12 C -0.356 4.356 13 H 0.107 0.893 14 C -0.194 4.194 15 N -0.588 5.588 16 Si 0.712 3.288 17 H -0.216 1.216 18 H -0.220 1.220 19 H -0.206 1.206 20 C -0.158 4.158 21 C -0.159 4.159 22 C -0.155 4.155 23 C -0.148 4.148 24 C -0.111 4.111 25 H 0.093 0.907 26 C -0.198 4.198 27 N -0.102 5.102 28 N -0.098 5.098 29 H 0.284 0.716 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.109 0.891 34 H 0.091 0.909 35 H 0.179 0.821 36 H 0.233 0.767 37 H 0.089 0.911 38 H 0.048 0.952 39 H 0.191 0.809 40 H 0.066 0.934 41 H 0.093 0.907 42 H 0.097 0.903 43 H 0.077 0.923 44 H 0.081 0.919 45 H 0.075 0.925 46 H 0.080 0.920 47 H 0.079 0.921 48 H 0.076 0.924 49 H 0.078 0.922 50 H 0.048 0.952 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 16.431 -12.478 -7.941 22.107 hybrid contribution -0.470 -0.784 -1.807 2.025 sum 15.960 -13.262 -9.748 22.927 Atomic orbital electron populations 1.21801 0.93960 1.02122 1.03065 1.20086 0.96516 0.88720 1.03671 1.21412 1.05720 0.96961 0.87427 1.21514 1.06394 0.92359 0.99815 1.22178 1.07178 0.97047 0.89660 1.16637 0.77525 0.80936 0.86423 1.90799 1.51545 1.82244 1.12762 1.45779 1.67297 1.11283 1.11266 1.20709 0.95141 0.83318 0.91781 1.21330 0.83968 0.99825 0.93990 1.42582 1.04375 1.84961 1.07503 1.19076 0.84366 1.37070 0.95055 0.89279 1.24599 0.95475 1.02396 0.96969 1.69696 0.98366 1.55888 1.34848 0.86585 0.76624 0.77821 0.87739 1.21576 1.22003 1.20597 1.21800 0.98780 0.97548 0.97706 1.21577 0.95042 1.01336 0.97922 1.21540 0.97089 0.98768 0.98133 1.21561 0.97861 0.98122 0.97303 1.21474 0.93685 0.99796 0.96176 0.90698 1.22309 1.00986 0.97542 0.98964 1.73516 1.19052 1.02246 1.15350 1.43236 1.48239 1.08632 1.09688 0.71562 0.91827 0.91557 0.92698 0.89106 0.90911 0.82088 0.76669 0.91136 0.95194 0.80921 0.93368 0.90661 0.90261 0.92337 0.91941 0.92533 0.91993 0.92127 0.92419 0.92188 0.95241 0.89971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.89 37.16 0.37 -0.87 16 2 C -0.05 -0.38 6.49 -27.88 -0.18 -0.56 16 3 C 0.01 0.12 6.48 -82.21 -0.53 -0.41 16 4 C -0.17 -2.53 10.73 -39.36 -0.42 -2.95 16 5 C 0.00 0.01 7.13 -82.76 -0.59 -0.58 16 6 C 0.60 10.86 6.01 -12.39 -0.07 10.79 16 7 O -0.50 -10.07 10.26 5.30 0.05 -10.02 16 8 N -0.70 -11.46 3.54 -48.58 -0.17 -11.63 16 9 C 0.18 2.87 0.32 -131.82 -0.04 2.82 16 10 C 0.14 2.86 4.39 -4.04 -0.02 2.84 16 11 N -0.75 -18.73 4.82 -59.91 -0.29 -19.02 16 12 C -0.23 -6.71 10.47 -15.06 -0.16 -6.87 16 13 H 0.09 2.85 8.06 -52.49 -0.42 2.42 16 14 C 0.00 0.01 5.50 -17.43 -0.10 -0.09 16 15 N -0.94 -30.70 13.97 55.49 0.78 -29.93 16 16 Si 0.88 23.49 27.74 -169.99 -4.71 18.77 16 17 H -0.29 -7.80 7.11 56.52 0.40 -7.39 16 18 H -0.29 -7.85 7.11 56.52 0.40 -7.44 16 19 H -0.28 -7.00 6.52 56.52 0.37 -6.63 16 20 C -0.12 -1.79 4.71 -26.73 -0.13 -1.91 16 21 C -0.12 -1.42 5.75 -26.73 -0.15 -1.57 16 22 C -0.12 -1.26 5.92 -26.73 -0.16 -1.41 16 23 C -0.11 -1.31 5.04 -26.73 -0.13 -1.45 16 24 C -0.09 -1.29 2.07 -90.62 -0.19 -1.48 16 25 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 26 C -0.14 -2.17 7.30 37.16 0.27 -1.90 16 27 N -0.27 -3.88 11.93 33.42 0.40 -3.48 16 28 N -0.38 -4.28 6.83 33.50 0.23 -4.05 16 29 H 0.44 3.17 8.96 -190.44 -1.71 1.46 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.16 2.26 8.06 -52.49 -0.42 1.84 16 36 H 0.40 5.96 6.70 -40.82 -0.27 5.69 16 37 H 0.07 1.61 4.20 -51.93 -0.22 1.40 16 38 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.36 8.85 4.47 -40.82 -0.18 8.67 16 40 H 0.26 8.00 8.31 -40.82 -0.34 7.66 16 41 H 0.07 1.29 7.28 -51.93 -0.38 0.91 16 42 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.06 0.68 6.61 -51.93 -0.34 0.33 16 44 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.06 0.76 7.60 -51.93 -0.39 0.36 16 48 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 49 H 0.06 0.98 5.48 -51.93 -0.28 0.69 16 50 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 51 H 0.08 1.47 5.17 -51.93 -0.27 1.20 16 LS Contribution 384.79 15.07 5.80 5.80 Total: -1.00 -35.58 384.79 -9.72 -45.30 By element: Atomic # 1 Polarization: 23.43 SS G_CDS: -9.56 Total: 13.87 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: -2.24 Total: -5.61 kcal Atomic # 7 Polarization: -69.05 SS G_CDS: 0.94 Total: -68.11 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: 0.05 Total: -10.02 kcal Atomic # 14 Polarization: 23.49 SS G_CDS: -4.71 Total: 18.77 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.58 -9.72 -45.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666051476.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.013 kcal (2) G-P(sol) polarization free energy of solvation -35.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds