Wall clock time and date at job start Tue Mar 31 2020 18:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50701 * 109.46852 * 2 1 4 4 C 1.35367 * 126.38325 * 85.00203 * 3 2 1 5 5 C 1.41509 * 105.49955 * 180.02562 * 4 3 2 6 6 C 1.47710 * 126.51626 * 180.02562 * 5 4 3 7 7 O 1.21575 * 120.00277 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00055 * 179.97438 * 6 5 4 9 9 C 1.46505 * 120.00181 * 176.44055 * 8 6 5 10 10 C 1.53002 * 109.46936 * 314.08402 * 9 8 6 11 11 N 1.46501 * 109.46943 * 304.57693 * 10 9 8 12 12 C 1.36931 * 119.99660 * 185.74521 * 11 10 9 13 13 H 1.08000 * 120.00708 * 0.02562 * 12 11 10 14 14 C 1.38823 * 119.99738 * 180.02562 * 12 11 10 15 15 N 1.31618 * 120.00016 * 180.02562 * 14 12 11 16 16 Si 1.86803 * 120.00047 * 0.02562 * 14 12 11 17 17 H 1.48496 * 109.47090 * 89.99794 * 16 14 12 18 18 H 1.48500 * 109.46836 * 210.00405 * 16 14 12 19 19 H 1.48500 * 109.47081 * 330.00062 * 16 14 12 20 20 C 1.52995 * 109.47183 * 194.08119 * 9 8 6 21 21 C 1.53001 * 109.47101 * 300.00198 * 20 9 8 22 22 C 1.52999 * 109.47254 * 299.99632 * 21 20 9 23 23 C 1.53008 * 109.46778 * 60.00032 * 22 21 20 24 24 C 1.52995 * 109.47065 * 300.00286 * 23 22 21 25 25 H 1.09000 * 109.46936 * 299.99515 * 24 23 22 26 26 C 1.53008 * 109.47065 * 180.02562 * 24 23 22 27 27 N 1.31811 * 106.96409 * 359.97438 * 5 4 3 28 28 N 1.28467 * 110.07218 * 359.72218 * 27 5 4 29 29 H 0.97000 * 124.88202 * 180.30353 * 28 27 5 30 30 H 1.09002 * 109.47042 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47436 * 299.99489 * 1 2 3 32 32 H 1.08995 * 109.47507 * 59.99910 * 1 2 3 33 33 H 1.09003 * 109.47396 * 119.99771 * 2 1 3 34 34 H 1.08993 * 109.47184 * 240.00408 * 2 1 3 35 35 H 1.07993 * 127.25098 * 359.97438 * 4 3 2 36 36 H 0.97003 * 120.00035 * 356.43917 * 8 6 5 37 37 H 1.08995 * 109.47406 * 64.58060 * 10 9 8 38 38 H 1.08998 * 109.46375 * 184.58086 * 10 9 8 39 39 H 0.96997 * 119.99915 * 5.74779 * 11 10 9 40 40 H 0.97000 * 119.99928 * 179.97438 * 15 14 12 41 41 H 1.09002 * 109.47426 * 60.00028 * 20 9 8 42 42 H 1.09000 * 109.46961 * 180.02562 * 20 9 8 43 43 H 1.09001 * 109.47530 * 59.99905 * 21 20 9 44 44 H 1.09005 * 109.47071 * 180.02562 * 21 20 9 45 45 H 1.08995 * 109.47584 * 179.97438 * 22 21 20 46 46 H 1.09000 * 109.47549 * 300.00317 * 22 21 20 47 47 H 1.09001 * 109.46893 * 60.00409 * 23 22 21 48 48 H 1.08997 * 109.47242 * 179.97438 * 23 22 21 49 49 H 1.09004 * 109.46766 * 306.89578 * 26 24 23 50 50 H 1.08997 * 109.47017 * 66.89078 * 26 24 23 51 51 H 1.08997 * 109.47170 * 186.89512 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.2103 2.2096 1.0857 5 6 2.6918 3.4416 0.5831 6 6 3.0415 4.6379 1.3759 7 8 2.9237 4.6211 2.5858 8 7 3.4911 5.7481 0.7580 9 6 3.7637 6.9596 1.5354 10 6 2.6033 7.2198 2.4980 11 7 1.3493 7.2890 1.7437 12 6 0.1859 7.6315 2.3795 13 1 0.1928 7.8509 3.4370 14 6 -1.0025 7.6966 1.6649 15 7 -2.1206 8.0262 2.2759 16 14 -1.0146 7.3163 -0.1640 17 1 -1.2614 5.8661 -0.3664 18 1 -2.0899 8.0986 -0.8250 19 1 0.2980 7.6821 -0.7543 20 6 3.9165 8.1504 0.5870 21 6 5.0769 7.8901 -0.3756 22 6 6.3693 7.7043 0.4219 23 6 6.2165 6.5134 1.3704 24 6 5.0561 6.7737 2.3329 25 1 5.2590 7.6751 2.9113 26 6 4.9037 5.5831 3.2818 27 7 2.7701 3.3184 -0.7269 28 7 2.3943 2.1425 -1.0824 29 1 2.3713 1.8203 -1.9970 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 1.8933 -0.5137 -0.8900 35 1 2.0235 1.9529 2.1179 36 1 3.6342 5.7449 -0.2014 37 1 2.5457 6.4098 3.2250 38 1 2.7672 8.1637 3.0178 39 1 1.3432 7.0923 0.7939 40 1 -2.9509 8.0720 1.7765 41 1 2.9958 8.2828 0.0187 42 1 4.1198 9.0517 1.1653 43 1 4.8741 6.9887 -0.9540 44 1 5.1861 8.7387 -1.0510 45 1 7.1959 7.5185 -0.2638 46 1 6.5722 8.6057 1.0003 47 1 6.0137 5.6121 0.7920 48 1 7.1373 6.3807 1.9383 49 1 4.8234 4.6639 2.7014 50 1 5.7743 5.5254 3.9350 51 1 4.0048 5.7118 3.8847 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001666051476.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:19 Heat of formation + Delta-G solvation = 26.102404 kcal Electronic energy + Delta-G solvation = -31279.495101 eV Core-core repulsion = 27407.725008 eV Total energy + Delta-G solvation = -3871.770092 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 8.64 seconds Orbital eigenvalues (eV) -43.68837 -41.92797 -38.86577 -36.54516 -35.29299 -34.62380 -33.78946 -33.30823 -32.67358 -31.14706 -30.18575 -27.90637 -26.57221 -25.36145 -24.64035 -24.37770 -22.38323 -22.03893 -21.82188 -21.19780 -20.20976 -19.57340 -18.58145 -18.06908 -17.28168 -16.77619 -16.42809 -16.36716 -15.63465 -15.53397 -15.31832 -15.22716 -15.02633 -14.84143 -14.72597 -14.65709 -14.25392 -14.17508 -13.72099 -13.50584 -13.35910 -13.14259 -12.85736 -12.79934 -12.66431 -12.55642 -12.50764 -12.31763 -12.14579 -12.11773 -11.86739 -11.85257 -11.72848 -11.36425 -11.15526 -11.07158 -10.82911 -10.56024 -10.31831 -9.95779 -9.72271 -9.16742 -8.03809 -5.33062 0.58180 1.12363 1.25863 1.30642 1.37450 1.90431 2.28581 2.43052 2.52343 3.26994 3.41744 3.57447 3.67824 3.74439 3.81465 3.94117 4.02272 4.17771 4.29304 4.31122 4.38602 4.47729 4.53979 4.55504 4.58488 4.68936 4.69666 4.76906 4.79289 4.89308 4.92576 5.02658 5.03934 5.12626 5.16893 5.19754 5.23335 5.26515 5.30299 5.34982 5.37774 5.40070 5.44505 5.54937 5.71606 5.74953 5.79114 6.11731 6.20259 6.60572 6.90111 7.07504 7.37349 7.85047 8.05945 9.18774 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.007664 B = 0.006003 C = 0.004035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3652.596664 B = 4663.349214 C = 6937.060781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.047 4.047 3 C 0.034 3.966 4 C -0.207 4.207 5 C -0.033 4.033 6 C 0.593 3.407 7 O -0.533 6.533 8 N -0.696 5.696 9 C 0.183 3.817 10 C 0.133 3.867 11 N -0.745 5.745 12 C -0.220 4.220 13 H 0.052 0.948 14 C -0.064 4.064 15 N -0.984 5.984 16 Si 0.950 3.050 17 H -0.291 1.291 18 H -0.290 1.290 19 H -0.253 1.253 20 C -0.118 4.118 21 C -0.115 4.115 22 C -0.112 4.112 23 C -0.104 4.104 24 C -0.087 4.087 25 H 0.082 0.918 26 C -0.133 4.133 27 N -0.272 5.272 28 N -0.365 5.365 29 H 0.460 0.540 30 H 0.086 0.914 31 H 0.041 0.959 32 H 0.049 0.951 33 H 0.103 0.897 34 H 0.107 0.893 35 H 0.154 0.846 36 H 0.406 0.594 37 H 0.051 0.949 38 H 0.025 0.975 39 H 0.362 0.638 40 H 0.256 0.744 41 H 0.051 0.949 42 H 0.082 0.918 43 H 0.061 0.939 44 H 0.079 0.921 45 H 0.079 0.921 46 H 0.069 0.931 47 H 0.054 0.946 48 H 0.073 0.927 49 H 0.048 0.952 50 H 0.046 0.954 51 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.812 -14.549 -11.450 26.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.086 4.086 3 C -0.093 4.093 4 C -0.235 4.235 5 C -0.193 4.193 6 C 0.378 3.622 7 O -0.409 6.409 8 N -0.348 5.348 9 C 0.097 3.903 10 C 0.007 3.993 11 N -0.390 5.390 12 C -0.351 4.351 13 H 0.070 0.930 14 C -0.255 4.255 15 N -0.636 5.636 16 Si 0.779 3.221 17 H -0.218 1.218 18 H -0.216 1.216 19 H -0.178 1.178 20 C -0.156 4.156 21 C -0.152 4.152 22 C -0.150 4.150 23 C -0.141 4.141 24 C -0.107 4.107 25 H 0.100 0.900 26 C -0.190 4.190 27 N -0.109 5.109 28 N -0.082 5.082 29 H 0.308 0.692 30 H 0.105 0.895 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.121 0.879 34 H 0.126 0.874 35 H 0.171 0.829 36 H 0.243 0.757 37 H 0.069 0.931 38 H 0.043 0.957 39 H 0.195 0.805 40 H 0.065 0.935 41 H 0.070 0.930 42 H 0.101 0.899 43 H 0.080 0.920 44 H 0.098 0.902 45 H 0.097 0.903 46 H 0.088 0.912 47 H 0.073 0.927 48 H 0.092 0.908 49 H 0.067 0.933 50 H 0.065 0.935 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 18.928 -13.845 -11.321 26.040 hybrid contribution -1.259 -0.438 -0.654 1.485 sum 17.669 -14.283 -11.975 25.682 Atomic orbital electron populations 1.21804 0.94332 1.03235 1.01613 1.20270 0.95931 0.86340 1.06034 1.21856 1.03181 0.98017 0.86199 1.21664 1.08277 0.92822 1.00733 1.22078 1.09382 0.97213 0.90585 1.16992 0.77107 0.81740 0.86342 1.90793 1.52975 1.82944 1.14146 1.45721 1.66809 1.10728 1.11585 1.20616 0.93955 0.84204 0.91541 1.21416 0.84361 0.98696 0.94856 1.42491 1.04310 1.84505 1.07681 1.19029 0.86316 1.36018 0.93725 0.93030 1.25378 0.94949 1.03020 1.02146 1.69876 0.99100 1.57680 1.36955 0.85464 0.77856 0.77179 0.81632 1.21788 1.21617 1.17768 1.21781 0.99319 0.96745 0.97793 1.21554 0.94040 1.02223 0.97408 1.21524 0.97038 0.98310 0.98101 1.21505 0.97018 0.98604 0.96996 1.21450 0.93523 0.99383 0.96322 0.90006 1.22148 1.00121 0.97732 0.98992 1.73424 1.19461 1.03709 1.14272 1.43343 1.46438 1.07612 1.10789 0.69189 0.89479 0.94009 0.93159 0.87881 0.87418 0.82873 0.75695 0.93103 0.95737 0.80476 0.93480 0.93023 0.89892 0.92027 0.90202 0.90273 0.91231 0.92701 0.90839 0.93316 0.93494 0.93210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.89 71.98 0.71 -1.44 16 2 C -0.05 -0.56 6.49 29.85 0.19 -0.37 16 3 C 0.03 0.71 6.48 41.40 0.27 0.98 16 4 C -0.21 -6.10 10.73 22.41 0.24 -5.86 16 5 C -0.03 -1.09 7.13 42.46 0.30 -0.78 16 6 C 0.59 22.00 6.01 86.75 0.52 22.52 16 7 O -0.53 -22.72 10.26 -3.95 -0.04 -22.76 16 8 N -0.70 -22.52 3.54 -425.88 -1.51 -24.03 16 9 C 0.18 5.91 0.32 3.60 0.00 5.92 16 10 C 0.13 5.81 4.39 86.38 0.38 6.19 16 11 N -0.74 -38.23 4.82 -343.45 -1.66 -39.88 16 12 C -0.22 -13.61 10.47 84.04 0.88 -12.73 16 13 H 0.05 3.52 8.06 -2.91 -0.02 3.49 16 14 C -0.06 -4.03 5.50 84.86 0.47 -3.57 16 15 N -0.98 -66.51 13.97 21.65 0.30 -66.21 16 16 Si 0.95 49.12 27.74 68.60 1.90 51.03 16 17 H -0.29 -15.09 7.11 99.48 0.71 -14.38 16 18 H -0.29 -14.77 7.11 99.48 0.71 -14.06 16 19 H -0.25 -11.83 6.52 99.48 0.65 -11.18 16 20 C -0.12 -3.34 4.71 30.59 0.14 -3.20 16 21 C -0.11 -2.33 5.75 30.59 0.18 -2.15 16 22 C -0.11 -1.97 5.92 30.60 0.18 -1.78 16 23 C -0.10 -2.18 5.04 30.60 0.15 -2.02 16 24 C -0.09 -2.38 2.07 -10.79 -0.02 -2.40 16 25 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 26 C -0.13 -4.17 7.30 71.98 0.53 -3.64 16 27 N -0.27 -7.55 11.93 -48.17 -0.57 -8.13 16 28 N -0.36 -7.26 6.83 -47.93 -0.33 -7.59 16 29 H 0.46 5.05 8.96 -219.99 -1.97 3.08 16 30 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.04 0.79 8.14 -2.38 -0.02 0.77 16 32 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.15 4.58 8.06 -2.91 -0.02 4.56 16 36 H 0.41 11.70 6.70 -92.71 -0.62 11.08 16 37 H 0.05 2.49 4.20 -2.39 -0.01 2.48 16 38 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.36 17.90 4.47 -92.71 -0.41 17.49 16 40 H 0.26 16.44 8.31 -92.71 -0.77 15.67 16 41 H 0.05 1.70 7.28 -2.39 -0.02 1.69 16 42 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 43 H 0.06 1.23 6.61 -2.39 -0.02 1.21 16 44 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 45 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 46 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 47 H 0.05 1.24 7.60 -2.39 -0.02 1.22 16 48 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 49 H 0.05 1.63 5.48 -2.38 -0.01 1.62 16 50 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 51 H 0.05 1.88 5.17 -2.39 -0.01 1.87 16 Total: -1.00 -81.60 384.79 1.12 -80.48 By element: Atomic # 1 Polarization: 43.53 SS G_CDS: -2.10 Total: 41.42 kcal Atomic # 6 Polarization: -9.46 SS G_CDS: 5.13 Total: -4.34 kcal Atomic # 7 Polarization: -142.07 SS G_CDS: -3.77 Total: -145.83 kcal Atomic # 8 Polarization: -22.72 SS G_CDS: -0.04 Total: -22.76 kcal Atomic # 14 Polarization: 49.12 SS G_CDS: 1.90 Total: 51.03 kcal Total: -81.60 1.12 -80.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666051476.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.583 kcal (2) G-P(sol) polarization free energy of solvation -81.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.64 seconds