Wall clock time and date at job start Tue Mar 31 2020 17:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50701 * 109.46945 * 2 1 4 4 C 1.39669 * 126.07382 * 125.26645 * 3 2 1 5 5 C 1.38407 * 105.36482 * 180.10653 * 4 3 2 6 6 C 1.47155 * 126.88783 * 179.91320 * 5 4 3 7 7 O 1.21630 * 120.00327 * 185.01597 * 6 5 4 8 8 N 1.34777 * 120.00045 * 5.02614 * 6 5 4 9 9 C 1.46498 * 119.99952 * 185.24134 * 8 6 5 10 10 C 1.52999 * 109.47320 * 179.97438 * 9 8 6 11 11 C 1.53000 * 109.47642 * 179.97438 * 10 9 8 12 12 C 1.53347 * 109.40525 * 295.12567 * 11 10 9 13 13 C 1.53195 * 109.14943 * 178.68360 * 12 11 10 14 14 N 1.46918 * 108.89555 * 54.56980 * 13 12 11 15 15 C 1.36942 * 120.62823 * 126.29985 * 14 13 12 16 16 H 1.07994 * 120.00255 * 327.52968 * 15 14 13 17 17 C 1.38816 * 119.99693 * 147.52987 * 15 14 13 18 18 N 1.31615 * 119.99695 * 168.01902 * 17 15 14 19 19 Si 1.86796 * 120.00248 * 348.01605 * 17 15 14 20 20 H 1.48498 * 109.47284 * 85.85388 * 19 17 15 21 21 H 1.48501 * 109.47277 * 205.85921 * 19 17 15 22 22 H 1.48507 * 109.47000 * 325.85752 * 19 17 15 23 23 C 1.46931 * 118.74299 * 306.32343 * 14 13 12 24 24 C 1.53038 * 109.46146 * 174.99965 * 11 10 9 25 25 N 1.36601 * 106.22390 * 359.65152 * 5 4 3 26 26 C 1.46506 * 125.18525 * 180.20858 * 25 5 4 27 27 N 1.28440 * 109.62381 * 0.22516 * 25 5 4 28 28 H 1.09006 * 109.46942 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47821 * 299.99971 * 1 2 3 30 30 H 1.08996 * 109.47596 * 60.00347 * 1 2 3 31 31 H 1.08994 * 109.47395 * 239.99814 * 2 1 3 32 32 H 1.09006 * 109.47631 * 119.99556 * 2 1 3 33 33 H 1.08007 * 127.32037 * 0.02562 * 4 3 2 34 34 H 0.97000 * 119.99724 * 5.23347 * 8 6 5 35 35 H 1.09006 * 109.47484 * 59.99669 * 9 8 6 36 36 H 1.08997 * 109.47101 * 299.99420 * 9 8 6 37 37 H 1.09007 * 109.47152 * 59.99724 * 10 9 8 38 38 H 1.09006 * 109.46799 * 300.00035 * 10 9 8 39 39 H 1.09002 * 109.45486 * 55.02546 * 11 10 9 40 40 H 1.08999 * 109.69221 * 58.71304 * 12 11 10 41 41 H 1.09005 * 109.47129 * 298.51677 * 12 11 10 42 42 H 1.09000 * 109.58023 * 294.71630 * 13 12 11 43 43 H 1.08999 * 109.58649 * 174.43229 * 13 12 11 44 44 H 0.97007 * 119.99787 * 179.97438 * 18 17 15 45 45 H 1.09000 * 109.58514 * 173.39330 * 23 14 13 46 46 H 1.08995 * 109.58585 * 293.68085 * 23 14 13 47 47 H 1.09006 * 109.49807 * 61.42187 * 24 11 10 48 48 H 1.08995 * 109.52619 * 301.34243 * 24 11 10 49 49 H 1.09000 * 109.47314 * 84.31901 * 26 25 5 50 50 H 1.09000 * 109.46793 * 204.32094 * 26 25 5 51 51 H 1.08999 * 109.47003 * 324.31167 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.9209 1.9790 0.9217 5 6 3.0840 3.2944 0.5235 6 6 3.9252 4.3148 1.1690 7 8 3.9065 5.4623 0.7661 8 7 4.7167 3.9779 2.2065 9 6 5.4664 5.0131 2.9224 10 6 6.2789 4.3687 4.0473 11 6 7.0623 5.4497 4.7945 12 6 8.0958 6.0749 3.8498 13 6 8.8541 7.1786 4.5939 14 7 9.4229 6.6170 5.8267 15 6 10.7586 6.7447 6.1001 16 1 11.4762 6.7566 5.2931 17 6 11.1902 6.8588 7.4145 18 7 12.4701 6.7446 7.6990 19 14 9.9545 7.1745 8.7793 20 1 9.3908 5.8822 9.2454 21 1 10.6311 7.8567 9.9116 22 1 8.8591 8.0358 8.2657 23 6 8.5314 5.9154 6.7604 24 6 7.7761 4.8242 5.9951 25 7 2.3122 3.4540 -0.5922 26 6 2.1825 4.6960 -1.3584 27 7 1.7174 2.3493 -0.8668 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3635 0.5138 0.8899 30 1 -0.3634 0.5137 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 3.3817 1.4887 1.7666 34 1 4.7899 3.0499 2.4793 35 1 4.7711 5.7379 3.3461 36 1 6.1403 5.5178 2.2302 37 1 6.9742 3.6437 3.6240 38 1 5.6046 3.8642 4.7394 39 1 6.3752 6.2213 5.1420 40 1 7.5906 6.5013 2.9832 41 1 8.7982 5.3088 3.5214 42 1 8.1685 7.9883 4.8436 43 1 9.6562 7.5605 3.9624 44 1 12.7718 6.8248 8.6175 45 1 9.1208 5.4617 7.5572 46 1 7.8211 6.6227 7.1887 47 1 8.4813 4.0697 5.6465 48 1 7.0423 4.3596 6.6536 49 1 3.0042 4.7711 -2.0706 50 1 1.2344 4.6937 -1.8963 51 1 2.2121 5.5472 -0.6783 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001666382397.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:53 Heat of formation + Delta-G solvation = 44.966480 kcal Electronic energy + Delta-G solvation = -28366.932046 eV Core-core repulsion = 24495.979961 eV Total energy + Delta-G solvation = -3870.952085 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.91079 -39.73841 -38.27324 -35.80566 -35.08226 -33.78317 -32.24774 -31.65548 -31.08114 -30.39868 -28.87981 -27.27434 -25.41667 -23.79694 -23.63446 -23.16036 -22.15378 -21.21519 -21.06269 -19.67737 -19.29715 -18.00536 -16.85590 -16.73074 -16.52343 -15.85093 -15.55891 -15.25917 -14.80563 -14.54927 -14.40058 -14.24378 -14.09668 -14.02547 -13.78896 -13.34802 -13.23464 -13.16654 -12.87427 -12.78493 -12.48938 -12.37487 -11.87997 -11.86542 -11.74637 -11.65532 -11.47071 -11.19427 -10.90866 -10.83408 -10.60110 -10.41210 -10.37615 -10.06176 -9.79270 -9.59341 -9.56887 -9.41423 -9.27174 -9.20768 -8.60515 -6.87335 -5.92405 -3.35902 0.91119 2.01620 2.18469 2.87824 2.89749 3.29884 3.46795 3.49823 4.05017 4.18517 4.51570 4.52565 4.73737 4.75672 4.83077 4.89102 4.91619 4.94395 5.00923 5.05179 5.12897 5.18055 5.29699 5.34635 5.35615 5.37266 5.52933 5.53218 5.60432 5.71977 5.82071 5.82883 5.84872 5.94871 5.97214 6.09558 6.11053 6.17128 6.24015 6.38607 6.39727 6.45193 6.55899 6.65915 6.70084 6.73160 6.99775 7.09044 7.69080 7.81126 8.04113 8.36655 8.96983 9.73249 10.13680 11.23901 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.026046 B = 0.001884 C = 0.001812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.751284 B =14858.319063 C =15447.402141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.037 4.037 3 C 0.025 3.975 4 C -0.186 4.186 5 C -0.036 4.036 6 C 0.589 3.411 7 O -0.540 6.540 8 N -0.712 5.712 9 C 0.118 3.882 10 C -0.126 4.126 11 C -0.075 4.075 12 C -0.133 4.133 13 C 0.148 3.852 14 N -0.608 5.608 15 C -0.259 4.259 16 H 0.083 0.917 17 C 0.022 3.978 18 N -0.916 5.916 19 Si 0.896 3.104 20 H -0.287 1.287 21 H -0.305 1.305 22 H -0.272 1.272 23 C 0.119 3.881 24 C -0.127 4.127 25 N -0.257 5.257 26 C 0.086 3.914 27 N -0.274 5.274 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.160 0.840 34 H 0.403 0.597 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.056 0.944 41 H 0.062 0.938 42 H 0.021 0.979 43 H 0.062 0.938 44 H 0.262 0.738 45 H 0.073 0.927 46 H 0.024 0.976 47 H 0.064 0.936 48 H 0.052 0.948 49 H 0.085 0.915 50 H 0.094 0.906 51 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.869 -12.016 -15.224 30.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.076 4.076 3 C -0.131 4.131 4 C -0.215 4.215 5 C -0.165 4.165 6 C 0.374 3.626 7 O -0.418 6.418 8 N -0.363 5.363 9 C -0.004 4.004 10 C -0.164 4.164 11 C -0.095 4.095 12 C -0.172 4.172 13 C 0.022 3.978 14 N -0.332 5.332 15 C -0.387 4.387 16 H 0.101 0.899 17 C -0.177 4.177 18 N -0.559 5.559 19 Si 0.728 3.272 20 H -0.215 1.215 21 H -0.234 1.234 22 H -0.197 1.197 23 C -0.006 4.006 24 C -0.166 4.166 25 N -0.043 5.043 26 C -0.054 4.054 27 N -0.108 5.108 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.096 0.904 32 H 0.101 0.899 33 H 0.178 0.822 34 H 0.238 0.762 35 H 0.088 0.912 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.074 0.926 41 H 0.081 0.919 42 H 0.039 0.961 43 H 0.080 0.920 44 H 0.072 0.928 45 H 0.091 0.909 46 H 0.042 0.958 47 H 0.083 0.917 48 H 0.071 0.929 49 H 0.103 0.897 50 H 0.113 0.887 51 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -24.372 -10.775 -16.414 31.297 hybrid contribution -0.042 -0.398 1.687 1.734 sum -24.413 -11.174 -14.726 30.622 Atomic orbital electron populations 1.21713 0.94557 1.01733 1.02448 1.19883 0.96228 0.88303 1.03151 1.21993 1.00061 0.96745 0.94266 1.22131 1.03826 0.92352 1.03208 1.21407 1.03636 0.96560 0.94871 1.16904 0.79286 0.86389 0.79991 1.90804 1.66943 1.20230 1.63790 1.45752 1.46004 1.12105 1.32447 1.21614 0.94702 0.89988 0.94112 1.21904 0.98675 0.99299 0.96514 1.21021 0.96360 0.96355 0.95733 1.22193 0.97733 0.99954 0.97285 1.20924 0.95841 0.92821 0.88228 1.44323 1.05667 1.62406 1.20818 1.18929 0.81045 1.45380 0.93363 0.89904 1.25412 0.95570 0.99057 0.97661 1.69764 1.13705 1.53263 1.19183 0.86829 0.81044 0.77735 0.81617 1.21509 1.23384 1.19700 1.21442 0.93100 0.92679 0.93400 1.22033 0.98771 0.99279 0.96507 1.45567 1.30187 1.09538 1.19047 1.22353 1.04289 0.81719 0.97040 1.73112 1.19722 0.92675 1.25279 0.92220 0.92728 0.92168 0.90409 0.89940 0.82203 0.76174 0.91197 0.90452 0.91148 0.91494 0.91496 0.92564 0.91936 0.96101 0.91987 0.92779 0.90936 0.95788 0.91718 0.92943 0.89652 0.88723 0.87266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.87 37.15 0.37 -0.51 16 2 C -0.04 -0.23 6.51 -27.89 -0.18 -0.41 16 3 C 0.03 0.23 6.49 -82.47 -0.54 -0.30 16 4 C -0.19 -1.60 10.42 -38.99 -0.41 -2.00 16 5 C -0.04 -0.38 6.96 -82.06 -0.57 -0.95 16 6 C 0.59 6.66 7.79 -12.64 -0.10 6.56 16 7 O -0.54 -7.56 14.81 5.25 0.08 -7.48 16 8 N -0.71 -6.57 5.53 -61.47 -0.34 -6.91 16 9 C 0.12 1.23 5.44 -4.04 -0.02 1.21 16 10 C -0.13 -1.30 4.80 -26.73 -0.13 -1.43 16 11 C -0.08 -1.05 2.15 -90.42 -0.19 -1.24 16 12 C -0.13 -2.04 5.16 -26.45 -0.14 -2.18 16 13 C 0.15 2.88 6.50 -3.71 -0.02 2.85 16 14 N -0.61 -14.31 2.74 -172.32 -0.47 -14.79 16 15 C -0.26 -7.24 10.06 -15.06 -0.15 -7.39 16 16 H 0.08 2.49 8.06 -52.49 -0.42 2.07 16 17 C 0.02 0.63 5.35 -17.43 -0.09 0.53 16 18 N -0.92 -28.20 13.97 55.49 0.78 -27.43 16 19 Si 0.90 22.62 24.24 -169.99 -4.12 18.50 16 20 H -0.29 -6.91 6.42 56.52 0.36 -6.54 16 21 H -0.31 -7.85 7.11 56.52 0.40 -7.45 16 22 H -0.27 -6.75 6.57 56.52 0.37 -6.38 16 23 C 0.12 2.54 4.16 -3.71 -0.02 2.52 16 24 C -0.13 -2.08 5.36 -26.61 -0.14 -2.22 16 25 N -0.26 -2.69 3.75 -63.88 -0.24 -2.93 16 26 C 0.09 0.68 10.71 59.85 0.64 1.32 16 27 N -0.27 -2.93 11.87 33.64 0.40 -2.53 16 28 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.08 0.37 8.12 -51.93 -0.42 -0.05 16 33 H 0.16 0.88 7.62 -52.48 -0.40 0.48 16 34 H 0.40 2.69 7.55 -40.82 -0.31 2.38 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.08 0.90 6.53 -51.93 -0.34 0.56 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.06 0.75 6.52 -51.93 -0.34 0.41 16 41 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.06 1.22 7.93 -51.93 -0.41 0.81 16 44 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 45 H 0.07 1.70 4.41 -51.93 -0.23 1.47 16 46 H 0.02 0.51 6.89 -51.93 -0.36 0.15 16 47 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 48 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 49 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 50 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 51 H 0.11 0.93 6.54 -51.93 -0.34 0.59 16 LS Contribution 397.22 15.07 5.99 5.99 Total: -1.00 -34.06 397.22 -8.32 -42.38 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -8.69 Total: -1.16 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: -1.69 Total: -3.64 kcal Atomic # 7 Polarization: -54.71 SS G_CDS: 0.12 Total: -54.59 kcal Atomic # 8 Polarization: -7.56 SS G_CDS: 0.08 Total: -7.48 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -4.12 Total: 18.50 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.06 -8.32 -42.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666382397.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.343 kcal (2) G-P(sol) polarization free energy of solvation -34.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds