Wall clock time and date at job start Tue Mar 31 2020 17:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50701 * 109.46945 * 2 1 4 4 C 1.39669 * 126.07382 * 125.26645 * 3 2 1 5 5 C 1.38407 * 105.36482 * 180.10653 * 4 3 2 6 6 C 1.47155 * 126.88783 * 179.91320 * 5 4 3 7 7 O 1.21630 * 120.00327 * 185.01597 * 6 5 4 8 8 N 1.34777 * 120.00045 * 5.02614 * 6 5 4 9 9 C 1.46498 * 119.99952 * 185.24134 * 8 6 5 10 10 C 1.52999 * 109.47320 * 179.97438 * 9 8 6 11 11 C 1.53000 * 109.47642 * 179.97438 * 10 9 8 12 12 C 1.53347 * 109.40525 * 295.12567 * 11 10 9 13 13 C 1.53195 * 109.14943 * 178.68360 * 12 11 10 14 14 N 1.46918 * 108.89555 * 54.56980 * 13 12 11 15 15 C 1.36942 * 120.62823 * 126.29985 * 14 13 12 16 16 H 1.07994 * 120.00255 * 327.52968 * 15 14 13 17 17 C 1.38816 * 119.99693 * 147.52987 * 15 14 13 18 18 N 1.31615 * 119.99695 * 168.01902 * 17 15 14 19 19 Si 1.86796 * 120.00248 * 348.01605 * 17 15 14 20 20 H 1.48498 * 109.47284 * 85.85388 * 19 17 15 21 21 H 1.48501 * 109.47277 * 205.85921 * 19 17 15 22 22 H 1.48507 * 109.47000 * 325.85752 * 19 17 15 23 23 C 1.46931 * 118.74299 * 306.32343 * 14 13 12 24 24 C 1.53038 * 109.46146 * 174.99965 * 11 10 9 25 25 N 1.36601 * 106.22390 * 359.65152 * 5 4 3 26 26 C 1.46506 * 125.18525 * 180.20858 * 25 5 4 27 27 N 1.28440 * 109.62381 * 0.22516 * 25 5 4 28 28 H 1.09006 * 109.46942 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47821 * 299.99971 * 1 2 3 30 30 H 1.08996 * 109.47596 * 60.00347 * 1 2 3 31 31 H 1.08994 * 109.47395 * 239.99814 * 2 1 3 32 32 H 1.09006 * 109.47631 * 119.99556 * 2 1 3 33 33 H 1.08007 * 127.32037 * 0.02562 * 4 3 2 34 34 H 0.97000 * 119.99724 * 5.23347 * 8 6 5 35 35 H 1.09006 * 109.47484 * 59.99669 * 9 8 6 36 36 H 1.08997 * 109.47101 * 299.99420 * 9 8 6 37 37 H 1.09007 * 109.47152 * 59.99724 * 10 9 8 38 38 H 1.09006 * 109.46799 * 300.00035 * 10 9 8 39 39 H 1.09002 * 109.45486 * 55.02546 * 11 10 9 40 40 H 1.08999 * 109.69221 * 58.71304 * 12 11 10 41 41 H 1.09005 * 109.47129 * 298.51677 * 12 11 10 42 42 H 1.09000 * 109.58023 * 294.71630 * 13 12 11 43 43 H 1.08999 * 109.58649 * 174.43229 * 13 12 11 44 44 H 0.97007 * 119.99787 * 179.97438 * 18 17 15 45 45 H 1.09000 * 109.58514 * 173.39330 * 23 14 13 46 46 H 1.08995 * 109.58585 * 293.68085 * 23 14 13 47 47 H 1.09006 * 109.49807 * 61.42187 * 24 11 10 48 48 H 1.08995 * 109.52619 * 301.34243 * 24 11 10 49 49 H 1.09000 * 109.47314 * 84.31901 * 26 25 5 50 50 H 1.09000 * 109.46793 * 204.32094 * 26 25 5 51 51 H 1.08999 * 109.47003 * 324.31167 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.9209 1.9790 0.9217 5 6 3.0840 3.2944 0.5235 6 6 3.9252 4.3148 1.1690 7 8 3.9065 5.4623 0.7661 8 7 4.7167 3.9779 2.2065 9 6 5.4664 5.0131 2.9224 10 6 6.2789 4.3687 4.0473 11 6 7.0623 5.4497 4.7945 12 6 8.0958 6.0749 3.8498 13 6 8.8541 7.1786 4.5939 14 7 9.4229 6.6170 5.8267 15 6 10.7586 6.7447 6.1001 16 1 11.4762 6.7566 5.2931 17 6 11.1902 6.8588 7.4145 18 7 12.4701 6.7446 7.6990 19 14 9.9545 7.1745 8.7793 20 1 9.3908 5.8822 9.2454 21 1 10.6311 7.8567 9.9116 22 1 8.8591 8.0358 8.2657 23 6 8.5314 5.9154 6.7604 24 6 7.7761 4.8242 5.9951 25 7 2.3122 3.4540 -0.5922 26 6 2.1825 4.6960 -1.3584 27 7 1.7174 2.3493 -0.8668 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3635 0.5138 0.8899 30 1 -0.3634 0.5137 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 3.3817 1.4887 1.7666 34 1 4.7899 3.0499 2.4793 35 1 4.7711 5.7379 3.3461 36 1 6.1403 5.5178 2.2302 37 1 6.9742 3.6437 3.6240 38 1 5.6046 3.8642 4.7394 39 1 6.3752 6.2213 5.1420 40 1 7.5906 6.5013 2.9832 41 1 8.7982 5.3088 3.5214 42 1 8.1685 7.9883 4.8436 43 1 9.6562 7.5605 3.9624 44 1 12.7718 6.8248 8.6175 45 1 9.1208 5.4617 7.5572 46 1 7.8211 6.6227 7.1887 47 1 8.4813 4.0697 5.6465 48 1 7.0423 4.3596 6.6536 49 1 3.0042 4.7711 -2.0706 50 1 1.2344 4.6937 -1.8963 51 1 2.2121 5.5472 -0.6783 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001666382397.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:49 Heat of formation + Delta-G solvation = 22.054114 kcal Electronic energy + Delta-G solvation = -28367.925600 eV Core-core repulsion = 24495.979961 eV Total energy + Delta-G solvation = -3871.945639 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -43.59132 -40.60417 -39.63994 -36.88061 -35.74268 -35.12738 -33.54894 -32.71357 -32.03747 -31.83598 -30.10033 -27.89041 -26.85984 -25.02887 -24.33326 -24.30602 -23.35167 -22.41147 -21.92148 -20.84328 -20.26714 -18.77292 -18.69497 -17.45617 -17.38810 -17.15787 -16.62190 -16.40497 -15.90015 -15.53102 -15.35928 -15.22211 -15.05946 -14.98054 -14.83451 -14.71184 -14.49108 -14.28520 -14.03173 -13.80265 -13.46317 -13.39435 -13.11621 -13.00972 -12.87973 -12.47899 -12.34915 -12.27439 -12.16467 -12.14672 -11.98426 -11.62299 -11.53956 -11.50236 -11.28266 -11.12551 -11.03277 -10.61213 -10.36581 -10.00453 -9.86883 -8.81896 -8.15355 -5.54854 0.17659 1.28923 1.35795 1.40858 1.50463 1.52891 2.10106 2.15749 2.41515 3.13113 3.35715 3.46601 3.50260 3.78502 3.92469 3.94785 4.06468 4.24455 4.25249 4.27680 4.30696 4.38032 4.44089 4.47732 4.53517 4.59174 4.63086 4.63535 4.68176 4.76648 4.78294 4.86200 4.94121 4.98765 5.03923 5.08119 5.13135 5.25081 5.27762 5.30637 5.32017 5.34836 5.38062 5.39643 5.53510 5.65958 5.75150 5.92144 6.14640 6.37230 6.95897 6.99040 7.07663 7.63832 8.06063 9.04846 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.026046 B = 0.001884 C = 0.001812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.751284 B =14858.319063 C =15447.402141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.037 4.037 3 C 0.016 3.984 4 C -0.176 4.176 5 C -0.057 4.057 6 C 0.588 3.412 7 O -0.574 6.574 8 N -0.698 5.698 9 C 0.124 3.876 10 C -0.111 4.111 11 C -0.071 4.071 12 C -0.122 4.122 13 C 0.139 3.861 14 N -0.623 5.623 15 C -0.248 4.248 16 H 0.045 0.955 17 C -0.040 4.040 18 N -0.965 5.965 19 Si 0.962 3.038 20 H -0.266 1.266 21 H -0.314 1.314 22 H -0.264 1.264 23 C 0.110 3.890 24 C -0.118 4.118 25 N -0.269 5.269 26 C 0.084 3.916 27 N -0.296 5.296 28 H 0.076 0.924 29 H 0.048 0.952 30 H 0.044 0.956 31 H 0.082 0.918 32 H 0.105 0.895 33 H 0.193 0.807 34 H 0.418 0.582 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.077 0.923 38 H 0.091 0.909 39 H 0.073 0.927 40 H 0.080 0.920 41 H 0.052 0.948 42 H 0.030 0.970 43 H 0.046 0.954 44 H 0.261 0.739 45 H 0.048 0.952 46 H 0.031 0.969 47 H 0.055 0.945 48 H 0.085 0.915 49 H 0.090 0.910 50 H 0.110 0.890 51 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.856 -14.012 -14.896 33.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.075 4.075 3 C -0.140 4.140 4 C -0.204 4.204 5 C -0.185 4.185 6 C 0.374 3.626 7 O -0.454 6.454 8 N -0.349 5.349 9 C 0.000 4.000 10 C -0.148 4.148 11 C -0.091 4.091 12 C -0.161 4.161 13 C 0.015 3.985 14 N -0.348 5.348 15 C -0.378 4.378 16 H 0.062 0.938 17 C -0.234 4.234 18 N -0.611 5.611 19 Si 0.791 3.209 20 H -0.192 1.192 21 H -0.243 1.243 22 H -0.188 1.188 23 C -0.014 4.014 24 C -0.157 4.157 25 N -0.056 5.056 26 C -0.056 4.056 27 N -0.130 5.130 28 H 0.095 0.905 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.101 0.899 32 H 0.124 0.876 33 H 0.210 0.790 34 H 0.256 0.744 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.095 0.905 38 H 0.110 0.890 39 H 0.091 0.909 40 H 0.099 0.901 41 H 0.071 0.929 42 H 0.048 0.952 43 H 0.065 0.935 44 H 0.070 0.930 45 H 0.066 0.934 46 H 0.049 0.951 47 H 0.074 0.926 48 H 0.103 0.897 49 H 0.108 0.892 50 H 0.129 0.871 51 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -27.403 -12.811 -16.104 34.269 hybrid contribution 0.909 0.216 1.475 1.746 sum -26.494 -12.595 -14.630 32.781 Atomic orbital electron populations 1.21683 0.94576 1.02532 1.01373 1.20029 0.96161 0.86821 1.04514 1.22567 0.99901 0.97650 0.93894 1.22561 1.02915 0.91446 1.03526 1.21500 1.04326 0.97206 0.95497 1.17062 0.79328 0.86068 0.80115 1.90787 1.68124 1.21629 1.64909 1.45580 1.45020 1.12751 1.31589 1.21472 0.94466 0.90166 0.93847 1.21719 0.98652 0.98015 0.96437 1.20963 0.95938 0.97470 0.94682 1.22071 0.97731 0.98317 0.97970 1.21120 0.95879 0.94599 0.86922 1.44465 1.04392 1.63552 1.22432 1.18847 0.82912 1.43700 0.92382 0.93766 1.26112 0.97291 0.99698 1.00277 1.69918 1.15910 1.55685 1.19607 0.85761 0.78667 0.78345 0.78144 1.19247 1.24324 1.18837 1.21542 0.92755 0.94005 0.93130 1.21928 0.98959 0.97382 0.97465 1.45798 1.30424 1.09945 1.19468 1.22423 1.05389 0.80888 0.96859 1.73100 1.20392 0.93216 1.26286 0.90479 0.93307 0.93716 0.89936 0.87632 0.79027 0.74420 0.91516 0.91776 0.90479 0.89034 0.90855 0.90149 0.92948 0.95152 0.93537 0.92995 0.93370 0.95098 0.92624 0.89692 0.89196 0.87145 0.88214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 9.87 71.98 0.71 -0.73 16 2 C -0.04 -0.36 6.51 29.85 0.19 -0.16 16 3 C 0.02 0.26 6.49 43.05 0.28 0.54 16 4 C -0.18 -2.52 10.42 22.66 0.24 -2.28 16 5 C -0.06 -1.09 6.96 40.78 0.28 -0.81 16 6 C 0.59 12.29 7.79 86.58 0.67 12.96 16 7 O -0.57 -15.65 14.81 -4.13 -0.06 -15.71 16 8 N -0.70 -10.71 5.53 -466.64 -2.58 -13.29 16 9 C 0.12 2.15 5.44 86.38 0.47 2.62 16 10 C -0.11 -1.78 4.80 30.59 0.15 -1.64 16 11 C -0.07 -1.72 2.15 -10.66 -0.02 -1.74 16 12 C -0.12 -3.51 5.16 30.78 0.16 -3.35 16 13 C 0.14 5.34 6.50 86.36 0.56 5.90 16 14 N -0.62 -29.15 2.74 -699.10 -1.92 -31.07 16 15 C -0.25 -14.32 10.06 84.03 0.85 -13.48 16 16 H 0.04 2.82 8.06 -2.91 -0.02 2.80 16 17 C -0.04 -2.34 5.35 84.86 0.45 -1.89 16 18 N -0.96 -61.47 13.97 21.65 0.30 -61.17 16 19 Si 0.96 47.07 24.24 68.60 1.66 48.73 16 20 H -0.27 -12.00 6.42 99.48 0.64 -11.36 16 21 H -0.31 -15.68 7.11 99.48 0.71 -14.97 16 22 H -0.26 -12.38 6.57 99.48 0.65 -11.73 16 23 C 0.11 4.46 4.16 86.36 0.36 4.82 16 24 C -0.12 -3.48 5.36 30.67 0.16 -3.32 16 25 N -0.27 -5.43 3.75 -356.01 -1.33 -6.76 16 26 C 0.08 1.31 10.71 127.77 1.37 2.68 16 27 N -0.30 -6.03 11.87 -47.50 -0.56 -6.59 16 28 H 0.08 0.49 8.14 -2.38 -0.02 0.47 16 29 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.11 0.54 8.12 -2.38 -0.02 0.52 16 33 H 0.19 1.27 7.62 -2.91 -0.02 1.24 16 34 H 0.42 3.85 7.55 -92.71 -0.70 3.15 16 35 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 36 H 0.06 1.32 6.53 -2.39 -0.02 1.30 16 37 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 38 H 0.09 1.12 8.14 -2.38 -0.02 1.10 16 39 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.08 1.95 6.52 -2.39 -0.02 1.93 16 41 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 42 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.05 1.87 7.93 -2.39 -0.02 1.85 16 44 H 0.26 15.80 8.31 -92.70 -0.77 15.03 16 45 H 0.05 2.18 4.41 -2.39 -0.01 2.17 16 46 H 0.03 1.22 6.89 -2.39 -0.02 1.20 16 47 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 48 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 49 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 50 H 0.11 1.26 8.14 -2.39 -0.02 1.25 16 51 H 0.10 1.74 6.54 -2.39 -0.02 1.72 16 Total: -1.00 -76.98 397.22 2.49 -74.49 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: 0.10 Total: 11.26 kcal Atomic # 6 Polarization: -6.76 SS G_CDS: 6.88 Total: 0.13 kcal Atomic # 7 Polarization: -112.79 SS G_CDS: -6.09 Total: -118.89 kcal Atomic # 8 Polarization: -15.65 SS G_CDS: -0.06 Total: -15.71 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 1.66 Total: 48.73 kcal Total: -76.98 2.49 -74.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666382397.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.542 kcal (2) G-P(sol) polarization free energy of solvation -76.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds