Wall clock time and date at job start Tue Mar 31 2020 19:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47002 * 2 1 4 4 C 1.50700 * 109.47181 * 180.02562 * 3 2 1 5 5 N 1.30446 * 125.98841 * 269.96132 * 4 3 2 6 6 N 1.39930 * 108.89891 * 179.78039 * 5 4 3 7 7 H 0.97007 * 125.75591 * 180.29749 * 6 5 4 8 8 C 1.34261 * 108.49403 * 0.42315 * 6 5 4 9 9 C 1.38050 * 107.40965 * 359.58690 * 8 6 5 10 10 C 1.47426 * 126.41052 * 180.28355 * 9 8 6 11 11 O 1.21605 * 120.00061 * 220.61326 * 10 9 8 12 12 N 1.34781 * 120.00085 * 40.60918 * 10 9 8 13 13 C 1.46921 * 120.63259 * 5.52344 * 12 10 9 14 14 C 1.53190 * 108.77686 * 126.36427 * 13 12 10 15 15 C 1.53037 * 109.31391 * 54.63316 * 14 13 12 16 16 C 1.53034 * 109.54026 * 298.63645 * 15 14 13 17 17 H 1.08999 * 109.50095 * 301.38009 * 16 15 14 18 18 C 1.52995 * 109.49927 * 181.31334 * 16 15 14 19 19 H 1.09004 * 109.47206 * 300.00437 * 18 16 15 20 20 C 1.53003 * 109.47093 * 60.00134 * 18 16 15 21 21 N 1.46497 * 109.47526 * 180.02562 * 18 16 15 22 22 C 1.36942 * 120.00282 * 155.00127 * 21 18 16 23 23 H 1.07992 * 119.99629 * 359.97438 * 22 21 18 24 24 C 1.38812 * 119.99781 * 180.02562 * 22 21 18 25 25 N 1.31621 * 120.00059 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 119.99819 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.47245 * 89.99937 * 26 24 22 28 28 H 1.48496 * 109.47222 * 209.99760 * 26 24 22 29 29 H 1.48496 * 109.47221 * 329.99914 * 26 24 22 30 30 C 1.46931 * 120.62983 * 185.23804 * 12 10 9 31 31 H 1.09006 * 109.46984 * 299.99748 * 1 2 3 32 32 H 1.08996 * 109.47023 * 59.99700 * 1 2 3 33 33 H 1.08996 * 109.47031 * 180.02562 * 1 2 3 34 34 H 1.09006 * 109.46984 * 240.00252 * 2 1 3 35 35 H 1.08994 * 109.47455 * 120.00018 * 2 1 3 36 36 H 1.09001 * 109.47661 * 59.99948 * 3 2 1 37 37 H 1.08996 * 109.47476 * 300.00022 * 3 2 1 38 38 H 1.07993 * 126.29848 * 179.84581 * 8 6 5 39 39 H 1.09000 * 109.58547 * 246.15291 * 13 12 10 40 40 H 1.09010 * 109.58335 * 6.43516 * 13 12 10 41 41 H 1.08999 * 109.49856 * 174.58966 * 14 13 12 42 42 H 1.09000 * 109.49797 * 294.68289 * 14 13 12 43 43 H 1.09006 * 109.45319 * 58.65451 * 15 14 13 44 44 H 1.08994 * 109.45994 * 178.62225 * 15 14 13 45 45 H 1.09000 * 109.47305 * 59.99952 * 20 18 16 46 46 H 1.08995 * 109.47175 * 180.02562 * 20 18 16 47 47 H 1.09007 * 109.46798 * 299.99812 * 20 18 16 48 48 H 0.97005 * 119.99737 * 334.99996 * 21 18 16 49 49 H 0.97009 * 119.99923 * 180.02562 * 25 24 22 50 50 H 1.09005 * 109.58500 * 353.42123 * 30 12 10 51 51 H 1.08993 * 109.58806 * 113.84548 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 7 4.3140 1.4431 1.0545 6 7 5.6513 1.4379 0.6428 7 1 6.4247 1.4330 1.2283 8 6 5.6837 1.4434 -0.6994 9 6 4.3768 1.4427 -1.1441 10 6 3.9305 1.4417 -2.5493 11 8 2.9843 2.1267 -2.8872 12 7 4.5714 0.6817 -3.4593 13 6 5.6371 -0.2416 -3.0465 14 6 5.3096 -1.6412 -3.5762 15 6 5.0898 -1.5711 -5.0891 16 6 3.9054 -0.6506 -5.3922 17 1 3.0134 -1.0292 -4.8932 18 6 3.6659 -0.6071 -6.9027 19 1 4.5579 -0.2274 -7.4012 20 6 3.3587 -2.0170 -7.4112 21 7 2.5325 0.2747 -7.1923 22 6 2.4312 0.8801 -8.4164 23 1 3.1871 0.7079 -9.1681 24 6 1.3574 1.7161 -8.6905 25 7 0.4364 1.9264 -7.7740 26 14 1.2196 2.5425 -10.3600 27 1 0.4542 1.6674 -11.2839 28 1 0.5162 3.8419 -10.2126 29 1 2.5789 2.7752 -10.9109 30 6 4.2132 0.7561 -4.8824 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3633 -1.0276 0.0005 34 1 1.8934 -0.5138 -0.8901 35 1 1.8934 -0.5138 0.8899 36 1 1.6767 1.9564 0.8900 37 1 1.6767 1.9564 -0.8899 38 1 6.5692 1.4438 -1.3176 39 1 6.5894 0.0917 -3.4591 40 1 5.6986 -0.2655 -1.9584 41 1 6.1384 -2.3152 -3.3598 42 1 4.4045 -2.0101 -3.0938 43 1 5.9867 -1.1787 -5.5685 44 1 4.8807 -2.5699 -5.4723 45 1 2.4669 -2.3968 -6.9127 46 1 3.1886 -1.9861 -8.4873 47 1 4.2025 -2.6728 -7.1958 48 1 1.8537 0.4297 -6.5169 49 1 -0.3142 2.5103 -7.9657 50 1 3.3338 1.3884 -5.0052 51 1 5.0469 1.1724 -5.4477 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667333237.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:28 Heat of formation + Delta-G solvation = 32.192982 kcal Electronic energy + Delta-G solvation = -30194.323269 eV Core-core repulsion = 26322.817284 eV Total energy + Delta-G solvation = -3871.505985 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.66037 -39.63173 -37.54502 -35.50136 -35.16436 -32.93918 -31.72885 -31.69331 -30.88008 -29.47039 -28.07676 -27.17355 -25.48425 -24.07783 -22.99649 -22.58432 -21.98143 -20.92481 -20.07694 -19.50913 -19.23761 -17.68640 -17.08212 -16.55805 -15.63954 -15.40156 -15.03413 -14.77653 -14.66591 -14.49650 -14.27541 -13.95704 -13.69552 -13.53047 -13.33956 -13.08485 -12.94447 -12.75269 -12.55406 -12.27040 -12.06920 -11.95141 -11.57703 -11.32110 -11.27369 -11.15914 -10.98194 -10.94313 -10.81314 -10.65923 -10.64505 -10.51762 -10.21322 -10.09396 -9.79324 -9.66591 -9.55622 -9.46837 -8.85545 -8.82976 -8.32222 -6.85989 -5.65807 -2.95046 1.41116 2.12700 2.48939 3.13500 3.42096 3.49440 3.54181 3.56546 4.30600 4.47212 4.64694 4.79621 4.87734 4.91553 4.97043 5.07158 5.11259 5.20276 5.27433 5.31202 5.40333 5.47223 5.52322 5.65659 5.71248 5.75587 5.77041 5.84322 5.87716 5.89292 5.97961 6.02329 6.07158 6.17697 6.21532 6.25471 6.27142 6.29095 6.37871 6.49615 6.56000 6.60021 6.79744 6.84383 6.89550 6.98082 7.15976 7.37057 7.68753 7.78464 8.49497 8.51705 9.62856 10.21142 10.55575 11.56275 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.011929 B = 0.003379 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2346.610682 B = 8284.495630 C = 9182.558254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.112 4.112 3 C -0.051 4.051 4 C 0.135 3.865 5 N -0.298 5.298 6 N -0.466 5.466 7 H 0.442 0.558 8 C 0.094 3.906 9 C -0.271 4.271 10 C 0.588 3.412 11 O -0.524 6.524 12 N -0.607 5.607 13 C 0.102 3.898 14 C -0.133 4.133 15 C -0.114 4.114 16 C -0.103 4.103 17 H 0.070 0.930 18 C 0.180 3.820 19 H 0.046 0.954 20 C -0.164 4.164 21 N -0.724 5.724 22 C -0.239 4.239 23 H 0.068 0.932 24 C -0.011 4.011 25 N -0.928 5.928 26 Si 0.903 3.097 27 H -0.291 1.291 28 H -0.292 1.292 29 H -0.283 1.283 30 C 0.124 3.876 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.055 0.945 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.079 0.921 37 H 0.102 0.898 38 H 0.185 0.815 39 H 0.064 0.936 40 H 0.081 0.919 41 H 0.069 0.931 42 H 0.065 0.935 43 H 0.062 0.938 44 H 0.068 0.932 45 H 0.045 0.955 46 H 0.051 0.949 47 H 0.038 0.962 48 H 0.385 0.615 49 H 0.254 0.746 50 H 0.108 0.892 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.632 -6.938 18.172 23.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.151 4.151 3 C -0.091 4.091 4 C -0.033 4.033 5 N -0.121 5.121 6 N -0.171 5.171 7 H 0.286 0.714 8 C -0.057 4.057 9 C -0.287 4.287 10 C 0.375 3.625 11 O -0.399 6.399 12 N -0.341 5.341 13 C -0.021 4.021 14 C -0.171 4.171 15 C -0.152 4.152 16 C -0.123 4.123 17 H 0.088 0.912 18 C 0.070 3.930 19 H 0.064 0.936 20 C -0.225 4.225 21 N -0.365 5.365 22 C -0.370 4.370 23 H 0.086 0.914 24 C -0.208 4.208 25 N -0.576 5.576 26 Si 0.734 3.266 27 H -0.219 1.219 28 H -0.219 1.219 29 H -0.209 1.209 30 C 0.003 3.997 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.098 0.902 37 H 0.121 0.879 38 H 0.202 0.798 39 H 0.083 0.917 40 H 0.100 0.900 41 H 0.087 0.913 42 H 0.084 0.916 43 H 0.080 0.920 44 H 0.087 0.913 45 H 0.064 0.936 46 H 0.071 0.929 47 H 0.056 0.944 48 H 0.219 0.781 49 H 0.064 0.936 50 H 0.126 0.874 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 13.164 -6.448 19.081 24.062 hybrid contribution 0.343 0.409 -1.365 1.466 sum 13.507 -6.039 17.717 23.082 Atomic orbital electron populations 1.21757 0.95073 1.01824 1.02257 1.21403 0.96293 0.95314 1.02049 1.20279 0.85435 0.98616 1.04742 1.22413 0.96979 0.95259 0.88634 1.77131 0.86212 1.26308 1.22417 1.46071 1.07760 1.57910 1.05355 0.71380 1.23131 0.98911 0.98249 0.85459 1.20338 0.92218 1.21194 0.94910 1.17318 0.82215 0.79587 0.83392 1.90838 1.27187 1.41965 1.79955 1.48040 1.37084 1.40677 1.08286 1.21873 0.90357 0.89756 1.00138 1.21903 1.01914 0.96037 0.97259 1.21622 0.98591 1.00380 0.94629 1.21671 0.97893 0.94693 0.98010 0.91201 1.20165 0.91974 0.90385 0.90482 0.93610 1.22484 0.99642 0.98694 1.01640 1.42452 1.25235 1.53466 1.15374 1.19185 1.05863 1.20790 0.91194 0.91356 1.24721 0.97627 1.00716 0.97695 1.69672 1.13373 1.41480 1.33052 0.86259 0.77370 0.78896 0.84062 1.21903 1.21856 1.20873 1.21601 1.02562 0.97965 0.77576 0.92760 0.91936 0.92619 0.91792 0.92167 0.90219 0.87942 0.79781 0.91728 0.90041 0.91252 0.91623 0.91954 0.91302 0.93625 0.92947 0.94357 0.78121 0.93555 0.87373 0.91907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.91 37.16 0.37 -1.25 16 2 C -0.11 -1.30 5.92 -26.73 -0.16 -1.45 16 3 C -0.05 -0.65 5.60 -27.88 -0.16 -0.81 16 4 C 0.13 1.78 6.51 -82.02 -0.53 1.24 16 5 N -0.30 -3.57 12.63 33.89 0.43 -3.14 16 6 N -0.47 -3.85 7.29 30.85 0.22 -3.62 16 7 H 0.44 1.91 8.96 -182.72 -1.64 0.27 16 8 C 0.09 0.83 9.63 -16.56 -0.16 0.67 16 9 C -0.27 -3.53 5.21 -105.07 -0.55 -4.07 16 10 C 0.59 9.51 7.44 -12.52 -0.09 9.41 16 11 O -0.52 -10.89 15.18 5.27 0.08 -10.81 16 12 N -0.61 -8.65 2.98 -174.29 -0.52 -9.17 16 13 C 0.10 1.01 5.49 -3.71 -0.02 0.99 16 14 C -0.13 -1.32 6.08 -26.61 -0.16 -1.48 16 15 C -0.11 -1.37 4.85 -26.69 -0.13 -1.50 16 16 C -0.10 -1.65 1.96 -90.73 -0.18 -1.83 16 17 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 18 C 0.18 3.47 2.48 -67.93 -0.17 3.31 16 19 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 20 C -0.16 -2.91 9.14 37.16 0.34 -2.57 16 21 N -0.72 -18.01 4.52 -53.43 -0.24 -18.25 16 22 C -0.24 -6.63 9.93 -15.06 -0.15 -6.78 16 23 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 24 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 25 N -0.93 -28.63 13.06 55.49 0.72 -27.91 16 26 Si 0.90 22.74 29.55 -169.99 -5.02 17.71 16 27 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 28 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 29 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 30 C 0.12 2.13 5.45 -3.93 -0.02 2.11 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.10 1.53 6.81 -51.93 -0.35 1.18 16 38 H 0.19 0.97 7.35 -52.49 -0.39 0.59 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.08 0.68 4.80 -51.92 -0.25 0.44 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.07 0.80 6.36 -51.93 -0.33 0.47 16 45 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 46 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 47 H 0.04 0.55 6.40 -51.93 -0.33 0.22 16 48 H 0.38 10.45 7.61 -40.82 -0.31 10.14 16 49 H 0.25 7.65 8.31 -40.82 -0.34 7.31 16 50 H 0.11 2.36 6.49 -51.93 -0.34 2.02 16 51 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 400.63 15.07 6.04 6.04 Total: -1.00 -34.71 400.63 -9.98 -44.69 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: -9.82 Total: 8.91 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: -1.87 Total: -4.44 kcal Atomic # 7 Polarization: -62.71 SS G_CDS: 0.62 Total: -62.09 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.08 Total: -10.81 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.71 -9.98 -44.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667333237.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.881 kcal (2) G-P(sol) polarization free energy of solvation -34.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds