Wall clock time and date at job start Tue Mar 31 2020 19:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47002 * 2 1 4 4 C 1.50700 * 109.47181 * 180.02562 * 3 2 1 5 5 N 1.30446 * 125.98841 * 269.96132 * 4 3 2 6 6 N 1.39930 * 108.89891 * 179.78039 * 5 4 3 7 7 H 0.97007 * 125.75591 * 180.29749 * 6 5 4 8 8 C 1.34261 * 108.49403 * 0.42315 * 6 5 4 9 9 C 1.38050 * 107.40965 * 359.58690 * 8 6 5 10 10 C 1.47426 * 126.41052 * 180.28355 * 9 8 6 11 11 O 1.21605 * 120.00061 * 220.61326 * 10 9 8 12 12 N 1.34781 * 120.00085 * 40.60918 * 10 9 8 13 13 C 1.46921 * 120.63259 * 5.52344 * 12 10 9 14 14 C 1.53190 * 108.77686 * 126.36427 * 13 12 10 15 15 C 1.53037 * 109.31391 * 54.63316 * 14 13 12 16 16 C 1.53034 * 109.54026 * 298.63645 * 15 14 13 17 17 H 1.08999 * 109.50095 * 301.38009 * 16 15 14 18 18 C 1.52995 * 109.49927 * 181.31334 * 16 15 14 19 19 H 1.09004 * 109.47206 * 300.00437 * 18 16 15 20 20 C 1.53003 * 109.47093 * 60.00134 * 18 16 15 21 21 N 1.46497 * 109.47526 * 180.02562 * 18 16 15 22 22 C 1.36942 * 120.00282 * 155.00127 * 21 18 16 23 23 H 1.07992 * 119.99629 * 359.97438 * 22 21 18 24 24 C 1.38812 * 119.99781 * 180.02562 * 22 21 18 25 25 N 1.31621 * 120.00059 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 119.99819 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.47245 * 89.99937 * 26 24 22 28 28 H 1.48496 * 109.47222 * 209.99760 * 26 24 22 29 29 H 1.48496 * 109.47221 * 329.99914 * 26 24 22 30 30 C 1.46931 * 120.62983 * 185.23804 * 12 10 9 31 31 H 1.09006 * 109.46984 * 299.99748 * 1 2 3 32 32 H 1.08996 * 109.47023 * 59.99700 * 1 2 3 33 33 H 1.08996 * 109.47031 * 180.02562 * 1 2 3 34 34 H 1.09006 * 109.46984 * 240.00252 * 2 1 3 35 35 H 1.08994 * 109.47455 * 120.00018 * 2 1 3 36 36 H 1.09001 * 109.47661 * 59.99948 * 3 2 1 37 37 H 1.08996 * 109.47476 * 300.00022 * 3 2 1 38 38 H 1.07993 * 126.29848 * 179.84581 * 8 6 5 39 39 H 1.09000 * 109.58547 * 246.15291 * 13 12 10 40 40 H 1.09010 * 109.58335 * 6.43516 * 13 12 10 41 41 H 1.08999 * 109.49856 * 174.58966 * 14 13 12 42 42 H 1.09000 * 109.49797 * 294.68289 * 14 13 12 43 43 H 1.09006 * 109.45319 * 58.65451 * 15 14 13 44 44 H 1.08994 * 109.45994 * 178.62225 * 15 14 13 45 45 H 1.09000 * 109.47305 * 59.99952 * 20 18 16 46 46 H 1.08995 * 109.47175 * 180.02562 * 20 18 16 47 47 H 1.09007 * 109.46798 * 299.99812 * 20 18 16 48 48 H 0.97005 * 119.99737 * 334.99996 * 21 18 16 49 49 H 0.97009 * 119.99923 * 180.02562 * 25 24 22 50 50 H 1.09005 * 109.58500 * 353.42123 * 30 12 10 51 51 H 1.08993 * 109.58806 * 113.84548 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 7 4.3140 1.4431 1.0545 6 7 5.6513 1.4379 0.6428 7 1 6.4247 1.4330 1.2283 8 6 5.6837 1.4434 -0.6994 9 6 4.3768 1.4427 -1.1441 10 6 3.9305 1.4417 -2.5493 11 8 2.9843 2.1267 -2.8872 12 7 4.5714 0.6817 -3.4593 13 6 5.6371 -0.2416 -3.0465 14 6 5.3096 -1.6412 -3.5762 15 6 5.0898 -1.5711 -5.0891 16 6 3.9054 -0.6506 -5.3922 17 1 3.0134 -1.0292 -4.8932 18 6 3.6659 -0.6071 -6.9027 19 1 4.5579 -0.2274 -7.4012 20 6 3.3587 -2.0170 -7.4112 21 7 2.5325 0.2747 -7.1923 22 6 2.4312 0.8801 -8.4164 23 1 3.1871 0.7079 -9.1681 24 6 1.3574 1.7161 -8.6905 25 7 0.4364 1.9264 -7.7740 26 14 1.2196 2.5425 -10.3600 27 1 0.4542 1.6674 -11.2839 28 1 0.5162 3.8419 -10.2126 29 1 2.5789 2.7752 -10.9109 30 6 4.2132 0.7561 -4.8824 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3633 -1.0276 0.0005 34 1 1.8934 -0.5138 -0.8901 35 1 1.8934 -0.5138 0.8899 36 1 1.6767 1.9564 0.8900 37 1 1.6767 1.9564 -0.8899 38 1 6.5692 1.4438 -1.3176 39 1 6.5894 0.0917 -3.4591 40 1 5.6986 -0.2655 -1.9584 41 1 6.1384 -2.3152 -3.3598 42 1 4.4045 -2.0101 -3.0938 43 1 5.9867 -1.1787 -5.5685 44 1 4.8807 -2.5699 -5.4723 45 1 2.4669 -2.3968 -6.9127 46 1 3.1886 -1.9861 -8.4873 47 1 4.2025 -2.6728 -7.1958 48 1 1.8537 0.4297 -6.5169 49 1 -0.3142 2.5103 -7.9657 50 1 3.3338 1.3884 -5.0052 51 1 5.0469 1.1724 -5.4477 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667333237.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:25 Heat of formation + Delta-G solvation = 8.347281 kcal Electronic energy + Delta-G solvation = -30195.357296 eV Core-core repulsion = 26322.817284 eV Total energy + Delta-G solvation = -3872.540012 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.55328 -40.79465 -38.88963 -36.93198 -36.20403 -34.62924 -33.09404 -32.59926 -32.01604 -30.92320 -29.61283 -28.11416 -26.66366 -25.83343 -24.38402 -23.55607 -22.93567 -22.06017 -21.22178 -20.86336 -20.17909 -19.10663 -18.59498 -17.72190 -16.80661 -16.67708 -16.40343 -16.05806 -15.71188 -15.54998 -15.39234 -15.33465 -15.22308 -14.80506 -14.44642 -14.18965 -14.12790 -13.99125 -13.92610 -13.65128 -13.36129 -12.99647 -12.96441 -12.77824 -12.50679 -12.49196 -12.34373 -12.23791 -12.13051 -12.01869 -11.91497 -11.76859 -11.65019 -11.60953 -11.30607 -11.14325 -10.93165 -10.79984 -10.48758 -9.80930 -9.47171 -8.95022 -7.88217 -5.16708 0.61063 1.10399 1.46456 1.48906 1.57021 1.76467 2.03589 2.31317 2.59024 3.39884 3.45096 3.70230 3.75308 3.89303 3.98525 4.02395 4.08284 4.13162 4.17934 4.25293 4.33720 4.37576 4.41421 4.50041 4.58936 4.64063 4.69015 4.78458 4.80059 4.84739 4.90017 4.93840 4.97822 5.00396 5.06487 5.08180 5.10904 5.21516 5.25409 5.32513 5.35994 5.39627 5.43936 5.53374 5.60105 5.63473 5.69936 6.28391 6.32536 6.48239 6.60929 7.30928 7.37726 8.16537 8.38030 9.35343 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.011929 B = 0.003379 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2346.610682 B = 8284.495630 C = 9182.558254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.103 4.103 3 C -0.051 4.051 4 C 0.120 3.880 5 N -0.314 5.314 6 N -0.442 5.442 7 H 0.463 0.537 8 C 0.133 3.867 9 C -0.309 4.309 10 C 0.582 3.418 11 O -0.590 6.590 12 N -0.602 5.602 13 C 0.095 3.905 14 C -0.128 4.128 15 C -0.108 4.108 16 C -0.089 4.089 17 H 0.043 0.957 18 C 0.173 3.827 19 H 0.050 0.950 20 C -0.154 4.154 21 N -0.737 5.737 22 C -0.232 4.232 23 H 0.078 0.922 24 C -0.080 4.080 25 N -0.972 5.972 26 Si 0.969 3.031 27 H -0.288 1.288 28 H -0.301 1.301 29 H -0.266 1.266 30 C 0.133 3.867 31 H 0.069 0.931 32 H 0.040 0.960 33 H 0.066 0.934 34 H 0.043 0.957 35 H 0.075 0.925 36 H 0.090 0.910 37 H 0.068 0.932 38 H 0.231 0.769 39 H 0.098 0.902 40 H 0.102 0.898 41 H 0.110 0.890 42 H 0.049 0.951 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.033 0.967 46 H 0.033 0.967 47 H 0.081 0.919 48 H 0.367 0.633 49 H 0.247 0.753 50 H 0.048 0.952 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.097 -8.874 19.302 27.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.142 4.142 3 C -0.090 4.090 4 C -0.047 4.047 5 N -0.137 5.137 6 N -0.149 5.149 7 H 0.312 0.688 8 C -0.021 4.021 9 C -0.324 4.324 10 C 0.372 3.628 11 O -0.471 6.471 12 N -0.334 5.334 13 C -0.026 4.026 14 C -0.166 4.166 15 C -0.145 4.145 16 C -0.110 4.110 17 H 0.062 0.938 18 C 0.064 3.936 19 H 0.068 0.932 20 C -0.213 4.213 21 N -0.377 5.377 22 C -0.364 4.364 23 H 0.096 0.904 24 C -0.272 4.272 25 N -0.623 5.623 26 Si 0.799 3.201 27 H -0.215 1.215 28 H -0.228 1.228 29 H -0.191 1.191 30 C 0.010 3.990 31 H 0.088 0.912 32 H 0.059 0.941 33 H 0.085 0.915 34 H 0.062 0.938 35 H 0.093 0.907 36 H 0.109 0.891 37 H 0.086 0.914 38 H 0.247 0.753 39 H 0.116 0.884 40 H 0.120 0.880 41 H 0.129 0.871 42 H 0.068 0.932 43 H 0.099 0.901 44 H 0.097 0.903 45 H 0.052 0.948 46 H 0.053 0.947 47 H 0.100 0.900 48 H 0.198 0.802 49 H 0.056 0.944 50 H 0.067 0.933 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 17.737 -8.458 20.241 28.211 hybrid contribution -0.918 0.965 -1.653 2.123 sum 16.818 -7.493 18.588 26.163 Atomic orbital electron populations 1.21755 0.94593 1.02446 1.01984 1.21323 0.96694 0.94525 1.01641 1.20180 0.86335 0.99026 1.03503 1.22389 0.97038 0.96041 0.89270 1.77074 0.87677 1.26863 1.22060 1.46089 1.07337 1.55806 1.05682 0.68818 1.23611 0.98427 0.94439 0.85641 1.20137 0.94301 1.25133 0.92844 1.17869 0.81343 0.78717 0.84864 1.90805 1.30241 1.44825 1.81202 1.48084 1.37763 1.40933 1.06634 1.22291 0.89879 0.88695 1.01720 1.21907 1.02856 0.96713 0.95121 1.21609 0.96738 0.99454 0.96745 1.21507 0.99143 0.95106 0.95197 0.93802 1.20479 0.89954 0.90209 0.92924 0.93227 1.22327 1.00914 0.98042 1.00056 1.42702 1.26438 1.54421 1.14146 1.19624 1.05233 1.19466 0.92067 0.90372 1.25550 0.97904 1.02417 1.01316 1.69867 1.14218 1.42934 1.35281 0.85195 0.77826 0.77216 0.79906 1.21536 1.22833 1.19076 1.21229 1.00258 0.97605 0.79946 0.91151 0.94079 0.91512 0.93786 0.90657 0.89137 0.91356 0.75257 0.88399 0.87959 0.87134 0.93212 0.90124 0.90259 0.94787 0.94737 0.90027 0.80168 0.94436 0.93347 0.91315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.39 9.91 71.98 0.71 -2.67 16 2 C -0.10 -2.51 5.92 30.59 0.18 -2.33 16 3 C -0.05 -1.39 5.60 29.85 0.17 -1.23 16 4 C 0.12 3.15 6.51 43.51 0.28 3.44 16 5 N -0.31 -6.93 12.63 -46.68 -0.59 -7.52 16 6 N -0.44 -5.62 7.29 -56.32 -0.41 -6.03 16 7 H 0.46 1.83 8.96 -213.42 -1.91 -0.08 16 8 C 0.13 1.82 9.63 84.28 0.81 2.64 16 9 C -0.31 -7.81 5.21 -20.15 -0.11 -7.91 16 10 C 0.58 19.68 7.44 86.66 0.65 20.33 16 11 O -0.59 -27.16 15.18 -4.05 -0.06 -27.23 16 12 N -0.60 -17.00 2.98 -823.60 -2.45 -19.46 16 13 C 0.10 1.51 5.49 86.36 0.47 1.98 16 14 C -0.13 -2.02 6.08 30.67 0.19 -1.84 16 15 C -0.11 -2.23 4.85 30.62 0.15 -2.08 16 16 C -0.09 -2.89 1.96 -10.86 -0.02 -2.91 16 17 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 18 C 0.17 6.68 2.48 44.99 0.11 6.80 16 19 H 0.05 1.89 8.08 -2.38 -0.02 1.87 16 20 C -0.15 -5.29 9.14 71.98 0.66 -4.64 16 21 N -0.74 -38.43 4.52 -322.95 -1.46 -39.89 16 22 C -0.23 -13.20 9.93 84.03 0.83 -12.37 16 23 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 24 C -0.08 -4.80 5.50 84.86 0.47 -4.33 16 25 N -0.97 -63.36 13.06 21.65 0.28 -63.08 16 26 Si 0.97 48.09 29.55 68.60 2.03 50.12 16 27 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 28 H -0.30 -15.27 7.11 99.48 0.71 -14.57 16 29 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 30 C 0.13 4.71 5.45 86.22 0.47 5.18 16 31 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 32 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.04 1.22 8.14 -2.38 -0.02 1.20 16 35 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.07 2.33 6.81 -2.39 -0.02 2.31 16 38 H 0.23 0.98 7.35 -2.91 -0.02 0.96 16 39 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.10 1.23 4.80 -2.38 -0.01 1.22 16 41 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 44 H 0.08 1.51 6.36 -2.39 -0.02 1.50 16 45 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 46 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 47 H 0.08 2.10 6.40 -2.38 -0.02 2.08 16 48 H 0.37 21.51 7.61 -92.70 -0.71 20.81 16 49 H 0.25 15.73 8.31 -92.70 -0.77 14.96 16 50 H 0.05 2.32 6.49 -2.38 -0.02 2.31 16 51 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 Total: -1.00 -84.76 400.63 1.68 -83.08 By element: Atomic # 1 Polarization: 33.63 SS G_CDS: -1.68 Total: 31.95 kcal Atomic # 6 Polarization: -7.96 SS G_CDS: 6.03 Total: -1.94 kcal Atomic # 7 Polarization: -131.36 SS G_CDS: -4.63 Total: -135.99 kcal Atomic # 8 Polarization: -27.16 SS G_CDS: -0.06 Total: -27.23 kcal Atomic # 14 Polarization: 48.09 SS G_CDS: 2.03 Total: 50.12 kcal Total: -84.76 1.68 -83.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667333237.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.427 kcal (2) G-P(sol) polarization free energy of solvation -84.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds