Wall clock time and date at job start Tue Mar 31 2020 19:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47002 * 2 1 4 4 C 1.50700 * 109.47181 * 180.02562 * 3 2 1 5 5 N 1.30446 * 125.98841 * 269.96132 * 4 3 2 6 6 N 1.39930 * 108.89891 * 179.78039 * 5 4 3 7 7 H 0.97007 * 125.75591 * 180.29749 * 6 5 4 8 8 C 1.34261 * 108.49403 * 0.42315 * 6 5 4 9 9 C 1.38050 * 107.40965 * 359.58690 * 8 6 5 10 10 C 1.47426 * 126.41052 * 180.28355 * 9 8 6 11 11 O 1.21605 * 120.00061 * 220.61326 * 10 9 8 12 12 N 1.34781 * 120.00085 * 40.60918 * 10 9 8 13 13 C 1.46921 * 120.63259 * 5.52344 * 12 10 9 14 14 C 1.53190 * 108.77686 * 126.36427 * 13 12 10 15 15 C 1.53037 * 109.31391 * 54.63316 * 14 13 12 16 16 C 1.53034 * 109.54026 * 298.63645 * 15 14 13 17 17 H 1.08999 * 109.50095 * 301.38009 * 16 15 14 18 18 C 1.52995 * 109.49927 * 181.31334 * 16 15 14 19 19 H 1.09008 * 109.47049 * 59.99858 * 18 16 15 20 20 C 1.52999 * 109.47394 * 300.00185 * 18 16 15 21 21 N 1.46497 * 109.47526 * 180.02562 * 18 16 15 22 22 C 1.36941 * 120.00310 * 205.00172 * 21 18 16 23 23 H 1.07996 * 120.00111 * 0.02562 * 22 21 18 24 24 C 1.38812 * 119.99846 * 179.97438 * 22 21 18 25 25 N 1.31621 * 120.00409 * 0.02562 * 24 22 21 26 26 Si 1.86806 * 119.99661 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47141 * 0.02562 * 26 24 22 28 28 H 1.48499 * 109.46852 * 120.00174 * 26 24 22 29 29 H 1.48495 * 109.46948 * 239.99893 * 26 24 22 30 30 C 1.46931 * 120.62983 * 185.23804 * 12 10 9 31 31 H 1.09006 * 109.46984 * 299.99748 * 1 2 3 32 32 H 1.08996 * 109.47023 * 59.99700 * 1 2 3 33 33 H 1.08996 * 109.47031 * 180.02562 * 1 2 3 34 34 H 1.09006 * 109.46984 * 240.00252 * 2 1 3 35 35 H 1.08994 * 109.47455 * 120.00018 * 2 1 3 36 36 H 1.09001 * 109.47661 * 59.99948 * 3 2 1 37 37 H 1.08996 * 109.47476 * 300.00022 * 3 2 1 38 38 H 1.07993 * 126.29848 * 179.84581 * 8 6 5 39 39 H 1.09000 * 109.58547 * 246.15291 * 13 12 10 40 40 H 1.09010 * 109.58335 * 6.43516 * 13 12 10 41 41 H 1.08999 * 109.49856 * 174.58966 * 14 13 12 42 42 H 1.09000 * 109.49514 * 294.64910 * 14 13 12 43 43 H 1.09006 * 109.45319 * 58.65451 * 15 14 13 44 44 H 1.08999 * 109.45862 * 178.60893 * 15 14 13 45 45 H 1.09001 * 109.47123 * 299.99984 * 20 18 16 46 46 H 1.08999 * 109.47240 * 59.99315 * 20 18 16 47 47 H 1.08995 * 109.47543 * 179.97438 * 20 18 16 48 48 H 0.97004 * 120.00081 * 24.99895 * 21 18 16 49 49 H 0.96995 * 120.00140 * 180.02562 * 25 24 22 50 50 H 1.09005 * 109.58500 * 353.42123 * 30 12 10 51 51 H 1.08993 * 109.58806 * 113.84548 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 7 4.3140 1.4431 1.0545 6 7 5.6513 1.4379 0.6428 7 1 6.4247 1.4330 1.2283 8 6 5.6837 1.4434 -0.6994 9 6 4.3768 1.4427 -1.1441 10 6 3.9305 1.4417 -2.5493 11 8 2.9843 2.1267 -2.8872 12 7 4.5714 0.6817 -3.4593 13 6 5.6371 -0.2416 -3.0465 14 6 5.3096 -1.6412 -3.5762 15 6 5.0898 -1.5711 -5.0891 16 6 3.9054 -0.6506 -5.3922 17 1 3.0134 -1.0292 -4.8932 18 6 3.6659 -0.6071 -6.9027 19 1 3.4471 -1.6116 -7.2650 20 6 4.9178 -0.0741 -7.6024 21 7 2.5325 0.2747 -7.1923 22 6 1.8054 0.1009 -8.3396 23 1 2.0672 -0.6865 -9.0308 24 6 0.7311 0.9361 -8.6136 25 7 0.4115 1.8955 -7.7710 26 14 -0.2604 0.6995 -10.1791 27 1 0.2988 -0.4388 -10.9518 28 1 -1.6751 0.4130 -9.8304 29 1 -0.1932 1.9356 -10.9991 30 6 4.2132 0.7561 -4.8824 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3633 -1.0276 0.0005 34 1 1.8934 -0.5138 -0.8901 35 1 1.8934 -0.5138 0.8899 36 1 1.6767 1.9564 0.8900 37 1 1.6767 1.9564 -0.8899 38 1 6.5692 1.4438 -1.3176 39 1 6.5894 0.0917 -3.4591 40 1 5.6986 -0.2655 -1.9584 41 1 6.1384 -2.3152 -3.3598 42 1 4.4048 -2.0103 -3.0934 43 1 5.9867 -1.1787 -5.5685 44 1 4.8809 -2.5699 -5.4723 45 1 5.1367 0.9304 -7.2402 46 1 5.7615 -0.7297 -7.3870 47 1 4.7474 -0.0435 -8.6785 48 1 2.2970 0.9817 -6.5713 49 1 -0.3394 2.4788 -7.9624 50 1 3.3338 1.3884 -5.0052 51 1 5.0469 1.1724 -5.4477 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667333239.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:42 Heat of formation + Delta-G solvation = 34.753927 kcal Electronic energy + Delta-G solvation = -30243.292915 eV Core-core repulsion = 26371.897980 eV Total energy + Delta-G solvation = -3871.394934 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.67546 -39.71599 -37.62212 -35.50806 -35.16837 -32.95129 -31.80471 -31.72961 -30.79597 -29.46570 -27.77952 -27.18173 -25.56448 -24.39486 -23.16013 -22.66145 -21.99591 -21.02608 -20.31943 -19.39595 -18.64150 -17.77199 -17.13566 -16.56553 -15.66445 -15.41721 -15.03959 -14.75360 -14.64618 -14.48492 -14.38495 -14.01155 -13.76494 -13.68757 -13.34089 -13.12585 -12.84669 -12.75716 -12.65286 -12.37643 -12.04451 -11.86456 -11.57552 -11.50730 -11.31492 -11.15223 -11.01606 -10.94097 -10.81862 -10.64056 -10.55790 -10.39505 -10.17324 -10.15881 -9.81928 -9.67824 -9.58133 -9.46154 -8.87405 -8.83157 -8.32324 -6.87019 -5.66229 -2.95830 1.39791 2.11454 2.47821 3.10207 3.39574 3.48895 3.53876 3.56631 4.29434 4.45741 4.64368 4.78057 4.86461 4.90932 4.96012 5.07282 5.10899 5.19998 5.26689 5.29800 5.38018 5.46485 5.52000 5.65378 5.70504 5.73586 5.77365 5.81748 5.89103 5.89685 5.92403 6.01598 6.02211 6.13587 6.18370 6.21934 6.29179 6.30352 6.37476 6.42612 6.48905 6.64918 6.72819 6.84459 6.88415 6.95294 7.18267 7.35969 7.64945 7.78572 8.46362 8.51417 9.62362 10.20889 10.54890 11.55839 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.012269 B = 0.003414 C = 0.002939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2281.644515 B = 8200.248705 C = 9523.342024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.112 4.112 3 C -0.052 4.052 4 C 0.135 3.865 5 N -0.298 5.298 6 N -0.466 5.466 7 H 0.442 0.558 8 C 0.094 3.906 9 C -0.272 4.272 10 C 0.588 3.412 11 O -0.524 6.524 12 N -0.607 5.607 13 C 0.103 3.897 14 C -0.133 4.133 15 C -0.114 4.114 16 C -0.103 4.103 17 H 0.073 0.927 18 C 0.180 3.820 19 H 0.048 0.952 20 C -0.169 4.169 21 N -0.725 5.725 22 C -0.239 4.239 23 H 0.069 0.931 24 C -0.013 4.013 25 N -0.928 5.928 26 Si 0.903 3.097 27 H -0.281 1.281 28 H -0.292 1.292 29 H -0.292 1.292 30 C 0.118 3.882 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.055 0.945 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.079 0.921 37 H 0.102 0.898 38 H 0.185 0.815 39 H 0.065 0.935 40 H 0.082 0.918 41 H 0.069 0.931 42 H 0.065 0.935 43 H 0.067 0.933 44 H 0.064 0.936 45 H 0.048 0.952 46 H 0.038 0.962 47 H 0.051 0.949 48 H 0.385 0.615 49 H 0.254 0.746 50 H 0.102 0.898 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.871 -5.566 18.052 24.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.151 4.151 3 C -0.091 4.091 4 C -0.032 4.032 5 N -0.120 5.120 6 N -0.171 5.171 7 H 0.286 0.714 8 C -0.057 4.057 9 C -0.287 4.287 10 C 0.375 3.625 11 O -0.400 6.400 12 N -0.340 5.340 13 C -0.021 4.021 14 C -0.172 4.172 15 C -0.152 4.152 16 C -0.123 4.123 17 H 0.091 0.909 18 C 0.070 3.930 19 H 0.066 0.934 20 C -0.229 4.229 21 N -0.368 5.368 22 C -0.370 4.370 23 H 0.087 0.913 24 C -0.209 4.209 25 N -0.576 5.576 26 Si 0.734 3.266 27 H -0.207 1.207 28 H -0.220 1.220 29 H -0.220 1.220 30 C -0.004 4.004 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.098 0.902 37 H 0.121 0.879 38 H 0.202 0.798 39 H 0.083 0.917 40 H 0.100 0.900 41 H 0.088 0.912 42 H 0.084 0.916 43 H 0.085 0.915 44 H 0.083 0.917 45 H 0.067 0.933 46 H 0.057 0.943 47 H 0.070 0.930 48 H 0.220 0.780 49 H 0.064 0.936 50 H 0.120 0.880 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 14.293 -5.225 18.971 24.321 hybrid contribution 0.071 0.114 -1.318 1.325 sum 14.364 -5.111 17.653 23.326 Atomic orbital electron populations 1.21756 0.95064 1.01846 1.02246 1.21404 0.96310 0.95296 1.02056 1.20281 0.85418 0.98636 1.04745 1.22417 0.96988 0.95220 0.88624 1.77136 0.86205 1.26298 1.22407 1.46073 1.07770 1.57878 1.05353 0.71369 1.23129 0.98894 0.98243 0.85473 1.20322 0.92228 1.21268 0.94864 1.17328 0.82170 0.79571 0.83424 1.90837 1.27160 1.42032 1.79966 1.48015 1.37147 1.40723 1.08119 1.21875 0.90282 0.89730 1.00173 1.21905 1.01965 0.96018 0.97276 1.21617 0.98877 1.00072 0.94624 1.21684 0.97939 0.94659 0.98044 0.90873 1.20165 0.88275 0.94614 0.89973 0.93411 1.22572 0.98396 1.00252 1.01663 1.42528 1.32197 1.37129 1.24907 1.19254 1.07703 1.12249 0.97819 0.91265 1.24739 0.99237 0.98415 0.98491 1.69684 1.30445 1.20966 1.36513 0.86181 0.80143 0.77119 0.83124 1.20667 1.21961 1.21973 1.21720 1.02366 0.98203 0.78064 0.92763 0.91938 0.92606 0.91785 0.92163 0.90207 0.87944 0.79769 0.91690 0.89988 0.91220 0.91600 0.91481 0.91744 0.93311 0.94322 0.92952 0.77966 0.93571 0.87974 0.91302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.91 37.16 0.37 -1.28 16 2 C -0.11 -1.31 5.92 -26.73 -0.16 -1.47 16 3 C -0.05 -0.66 5.60 -27.88 -0.16 -0.81 16 4 C 0.14 1.77 6.51 -82.02 -0.53 1.24 16 5 N -0.30 -3.54 12.63 33.89 0.43 -3.11 16 6 N -0.47 -3.78 7.29 30.85 0.22 -3.56 16 7 H 0.44 1.85 8.96 -182.72 -1.64 0.22 16 8 C 0.09 0.81 9.63 -16.56 -0.16 0.65 16 9 C -0.27 -3.48 5.21 -105.07 -0.55 -4.03 16 10 C 0.59 9.38 7.44 -12.52 -0.09 9.28 16 11 O -0.52 -10.75 15.18 5.27 0.08 -10.67 16 12 N -0.61 -8.48 2.98 -174.29 -0.52 -9.00 16 13 C 0.10 1.00 5.49 -3.71 -0.02 0.98 16 14 C -0.13 -1.32 6.08 -26.61 -0.16 -1.49 16 15 C -0.11 -1.37 4.78 -26.69 -0.13 -1.50 16 16 C -0.10 -1.67 2.32 -90.73 -0.21 -1.88 16 17 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 18 C 0.18 3.50 2.72 -67.94 -0.18 3.31 16 19 H 0.05 0.95 8.08 -51.92 -0.42 0.53 16 20 C -0.17 -2.92 8.79 37.16 0.33 -2.60 16 21 N -0.73 -18.26 5.04 -53.43 -0.27 -18.53 16 22 C -0.24 -6.69 9.93 -15.06 -0.15 -6.84 16 23 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 24 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 25 N -0.93 -28.80 13.06 55.49 0.72 -28.08 16 26 Si 0.90 22.77 29.55 -169.99 -5.02 17.75 16 27 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 28 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 29 H -0.29 -7.43 7.11 56.52 0.40 -7.02 16 30 C 0.12 1.96 5.21 -3.93 -0.02 1.94 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.10 1.53 6.81 -51.93 -0.35 1.18 16 38 H 0.19 0.93 7.35 -52.49 -0.39 0.54 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.08 0.68 4.80 -51.92 -0.25 0.43 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.07 0.75 6.50 -51.93 -0.34 0.42 16 44 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 45 H 0.05 0.85 6.32 -51.93 -0.33 0.52 16 46 H 0.04 0.54 6.46 -51.93 -0.34 0.21 16 47 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 48 H 0.39 10.48 6.16 -40.82 -0.25 10.23 16 49 H 0.25 7.66 8.31 -40.82 -0.34 7.32 16 50 H 0.10 2.15 5.57 -51.93 -0.29 1.86 16 51 H 0.07 1.09 6.16 -51.93 -0.32 0.77 16 LS Contribution 395.13 15.07 5.95 5.95 Total: -1.00 -35.15 395.13 -9.85 -45.00 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: -9.53 Total: 9.20 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: -1.92 Total: -4.96 kcal Atomic # 7 Polarization: -62.87 SS G_CDS: 0.59 Total: -62.28 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.08 Total: -10.67 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.75 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -35.15 -9.85 -45.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667333239.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.759 kcal (2) G-P(sol) polarization free energy of solvation -35.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds