Wall clock time and date at job start Tue Mar 31 2020 19:15:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47002 * 2 1 4 4 C 1.50700 * 109.47181 * 180.02562 * 3 2 1 5 5 N 1.30446 * 125.98841 * 269.96132 * 4 3 2 6 6 N 1.39930 * 108.89891 * 179.78039 * 5 4 3 7 7 H 0.97007 * 125.75591 * 180.29749 * 6 5 4 8 8 C 1.34261 * 108.49403 * 0.42315 * 6 5 4 9 9 C 1.38050 * 107.40965 * 359.58690 * 8 6 5 10 10 C 1.47426 * 126.41052 * 180.28355 * 9 8 6 11 11 O 1.21605 * 120.00061 * 220.61326 * 10 9 8 12 12 N 1.34781 * 120.00085 * 40.60918 * 10 9 8 13 13 C 1.46921 * 120.63259 * 5.52344 * 12 10 9 14 14 C 1.53190 * 108.77686 * 126.36427 * 13 12 10 15 15 C 1.53037 * 109.31391 * 54.63316 * 14 13 12 16 16 C 1.53034 * 109.54026 * 298.63645 * 15 14 13 17 17 H 1.08999 * 109.50095 * 301.38009 * 16 15 14 18 18 C 1.52995 * 109.49927 * 181.31334 * 16 15 14 19 19 H 1.09008 * 109.47049 * 59.99858 * 18 16 15 20 20 C 1.52999 * 109.47394 * 300.00185 * 18 16 15 21 21 N 1.46497 * 109.47526 * 180.02562 * 18 16 15 22 22 C 1.36941 * 120.00310 * 205.00172 * 21 18 16 23 23 H 1.07996 * 120.00111 * 0.02562 * 22 21 18 24 24 C 1.38812 * 119.99846 * 179.97438 * 22 21 18 25 25 N 1.31621 * 120.00409 * 0.02562 * 24 22 21 26 26 Si 1.86806 * 119.99661 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47141 * 0.02562 * 26 24 22 28 28 H 1.48499 * 109.46852 * 120.00174 * 26 24 22 29 29 H 1.48495 * 109.46948 * 239.99893 * 26 24 22 30 30 C 1.46931 * 120.62983 * 185.23804 * 12 10 9 31 31 H 1.09006 * 109.46984 * 299.99748 * 1 2 3 32 32 H 1.08996 * 109.47023 * 59.99700 * 1 2 3 33 33 H 1.08996 * 109.47031 * 180.02562 * 1 2 3 34 34 H 1.09006 * 109.46984 * 240.00252 * 2 1 3 35 35 H 1.08994 * 109.47455 * 120.00018 * 2 1 3 36 36 H 1.09001 * 109.47661 * 59.99948 * 3 2 1 37 37 H 1.08996 * 109.47476 * 300.00022 * 3 2 1 38 38 H 1.07993 * 126.29848 * 179.84581 * 8 6 5 39 39 H 1.09000 * 109.58547 * 246.15291 * 13 12 10 40 40 H 1.09010 * 109.58335 * 6.43516 * 13 12 10 41 41 H 1.08999 * 109.49856 * 174.58966 * 14 13 12 42 42 H 1.09000 * 109.49514 * 294.64910 * 14 13 12 43 43 H 1.09006 * 109.45319 * 58.65451 * 15 14 13 44 44 H 1.08999 * 109.45862 * 178.60893 * 15 14 13 45 45 H 1.09001 * 109.47123 * 299.99984 * 20 18 16 46 46 H 1.08999 * 109.47240 * 59.99315 * 20 18 16 47 47 H 1.08995 * 109.47543 * 179.97438 * 20 18 16 48 48 H 0.97004 * 120.00081 * 24.99895 * 21 18 16 49 49 H 0.96995 * 120.00140 * 180.02562 * 25 24 22 50 50 H 1.09005 * 109.58500 * 353.42123 * 30 12 10 51 51 H 1.08993 * 109.58806 * 113.84548 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 7 4.3140 1.4431 1.0545 6 7 5.6513 1.4379 0.6428 7 1 6.4247 1.4330 1.2283 8 6 5.6837 1.4434 -0.6994 9 6 4.3768 1.4427 -1.1441 10 6 3.9305 1.4417 -2.5493 11 8 2.9843 2.1267 -2.8872 12 7 4.5714 0.6817 -3.4593 13 6 5.6371 -0.2416 -3.0465 14 6 5.3096 -1.6412 -3.5762 15 6 5.0898 -1.5711 -5.0891 16 6 3.9054 -0.6506 -5.3922 17 1 3.0134 -1.0292 -4.8932 18 6 3.6659 -0.6071 -6.9027 19 1 3.4471 -1.6116 -7.2650 20 6 4.9178 -0.0741 -7.6024 21 7 2.5325 0.2747 -7.1923 22 6 1.8054 0.1009 -8.3396 23 1 2.0672 -0.6865 -9.0308 24 6 0.7311 0.9361 -8.6136 25 7 0.4115 1.8955 -7.7710 26 14 -0.2604 0.6995 -10.1791 27 1 0.2988 -0.4388 -10.9518 28 1 -1.6751 0.4130 -9.8304 29 1 -0.1932 1.9356 -10.9991 30 6 4.2132 0.7561 -4.8824 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3633 -1.0276 0.0005 34 1 1.8934 -0.5138 -0.8901 35 1 1.8934 -0.5138 0.8899 36 1 1.6767 1.9564 0.8900 37 1 1.6767 1.9564 -0.8899 38 1 6.5692 1.4438 -1.3176 39 1 6.5894 0.0917 -3.4591 40 1 5.6986 -0.2655 -1.9584 41 1 6.1384 -2.3152 -3.3598 42 1 4.4048 -2.0103 -3.0934 43 1 5.9867 -1.1787 -5.5685 44 1 4.8809 -2.5699 -5.4723 45 1 5.1367 0.9304 -7.2402 46 1 5.7615 -0.7297 -7.3870 47 1 4.7474 -0.0435 -8.6785 48 1 2.2970 0.9817 -6.5713 49 1 -0.3394 2.4788 -7.9624 50 1 3.3338 1.3884 -5.0052 51 1 5.0469 1.1724 -5.4477 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667333239.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:40 Heat of formation + Delta-G solvation = 10.239262 kcal Electronic energy + Delta-G solvation = -30244.355950 eV Core-core repulsion = 26371.897980 eV Total energy + Delta-G solvation = -3872.457970 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.55562 -40.86873 -38.95945 -36.91859 -36.20996 -34.65237 -33.15892 -32.59982 -31.93757 -30.96513 -29.26652 -28.12890 -26.66392 -26.15947 -24.63205 -23.62822 -22.95493 -22.17628 -21.36912 -20.40608 -19.91492 -19.23309 -18.59107 -17.72000 -16.86919 -16.67824 -16.38511 -16.02702 -15.75173 -15.52673 -15.40383 -15.38854 -15.26378 -15.04721 -14.51724 -14.21365 -14.07400 -13.96190 -13.81770 -13.79663 -13.31058 -12.99690 -12.94067 -12.85272 -12.61794 -12.49960 -12.31284 -12.23826 -12.06039 -11.97362 -11.83791 -11.74813 -11.69149 -11.62964 -11.32396 -11.13513 -10.92210 -10.82648 -10.48831 -9.80557 -9.45453 -8.97591 -7.89850 -5.19132 0.61543 1.10282 1.45773 1.47469 1.57295 1.76464 2.02759 2.31279 2.57763 3.39583 3.42900 3.70197 3.76377 3.92805 3.93786 4.01159 4.07208 4.12322 4.16932 4.22531 4.32295 4.37633 4.42025 4.46460 4.58442 4.64004 4.67413 4.76106 4.78878 4.80015 4.87878 4.92708 4.95124 4.97612 5.06098 5.13899 5.17515 5.19609 5.24548 5.28540 5.35088 5.39247 5.43305 5.49642 5.57219 5.64341 5.74668 6.28853 6.31381 6.47717 6.60393 7.30125 7.36337 8.15954 8.36597 9.33746 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.012269 B = 0.003414 C = 0.002939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2281.644515 B = 8200.248705 C = 9523.342024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.103 4.103 3 C -0.051 4.051 4 C 0.119 3.881 5 N -0.314 5.314 6 N -0.442 5.442 7 H 0.463 0.537 8 C 0.133 3.867 9 C -0.309 4.309 10 C 0.582 3.418 11 O -0.590 6.590 12 N -0.602 5.602 13 C 0.096 3.904 14 C -0.129 4.129 15 C -0.107 4.107 16 C -0.091 4.091 17 H 0.038 0.962 18 C 0.171 3.829 19 H 0.044 0.956 20 C -0.156 4.156 21 N -0.742 5.742 22 C -0.234 4.234 23 H 0.078 0.922 24 C -0.081 4.081 25 N -0.972 5.972 26 Si 0.971 3.029 27 H -0.262 1.262 28 H -0.297 1.297 29 H -0.295 1.295 30 C 0.127 3.873 31 H 0.070 0.930 32 H 0.039 0.961 33 H 0.065 0.935 34 H 0.042 0.958 35 H 0.075 0.925 36 H 0.090 0.910 37 H 0.068 0.932 38 H 0.233 0.767 39 H 0.102 0.898 40 H 0.102 0.898 41 H 0.111 0.889 42 H 0.046 0.954 43 H 0.088 0.912 44 H 0.071 0.929 45 H 0.044 0.956 46 H 0.083 0.917 47 H 0.032 0.968 48 H 0.370 0.630 49 H 0.248 0.752 50 H 0.045 0.955 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.154 -7.692 19.166 28.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.142 4.142 3 C -0.090 4.090 4 C -0.048 4.048 5 N -0.137 5.137 6 N -0.149 5.149 7 H 0.312 0.688 8 C -0.020 4.020 9 C -0.325 4.325 10 C 0.372 3.628 11 O -0.471 6.471 12 N -0.334 5.334 13 C -0.025 4.025 14 C -0.167 4.167 15 C -0.145 4.145 16 C -0.111 4.111 17 H 0.056 0.944 18 C 0.063 3.937 19 H 0.062 0.938 20 C -0.215 4.215 21 N -0.383 5.383 22 C -0.366 4.366 23 H 0.096 0.904 24 C -0.273 4.273 25 N -0.624 5.624 26 Si 0.800 3.200 27 H -0.186 1.186 28 H -0.224 1.224 29 H -0.222 1.222 30 C 0.004 3.996 31 H 0.089 0.911 32 H 0.058 0.942 33 H 0.084 0.916 34 H 0.061 0.939 35 H 0.094 0.906 36 H 0.109 0.891 37 H 0.087 0.913 38 H 0.249 0.751 39 H 0.120 0.880 40 H 0.120 0.880 41 H 0.129 0.871 42 H 0.065 0.935 43 H 0.107 0.893 44 H 0.090 0.910 45 H 0.063 0.937 46 H 0.102 0.898 47 H 0.051 0.949 48 H 0.203 0.797 49 H 0.057 0.943 50 H 0.063 0.937 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 18.675 -7.434 20.117 28.437 hybrid contribution -1.146 0.718 -1.599 2.095 sum 17.529 -6.715 18.517 26.367 Atomic orbital electron populations 1.21754 0.94639 1.02413 1.01978 1.21322 0.96664 0.94611 1.01598 1.20175 0.86404 0.98938 1.03521 1.22380 0.97005 0.96069 0.89320 1.77076 0.87706 1.26867 1.22063 1.46091 1.07316 1.55784 1.05717 0.68810 1.23628 0.98423 0.94361 0.85623 1.20132 0.94314 1.25185 0.92821 1.17873 0.81306 0.78745 0.84876 1.90804 1.30180 1.44887 1.81191 1.48074 1.37789 1.40950 1.06566 1.22299 0.89949 0.88527 1.01754 1.21911 1.02772 0.96894 0.95104 1.21604 0.97042 0.99062 0.96780 1.21506 0.98911 0.95498 0.95202 0.94354 1.20481 0.87476 0.93198 0.92567 0.93823 1.22382 0.98401 1.00934 0.99800 1.42821 1.33830 1.37698 1.23922 1.19689 1.07258 1.11369 0.98307 0.90441 1.25587 1.01023 0.98766 1.01924 1.69881 1.31205 1.22481 1.38801 0.85099 0.78129 0.77311 0.79422 1.18646 1.22443 1.22228 1.21381 1.00475 0.97390 0.80333 0.91067 0.94153 0.91585 0.93902 0.90627 0.89104 0.91350 0.75116 0.88034 0.87952 0.87070 0.93512 0.89305 0.91027 0.93686 0.89821 0.94920 0.79739 0.94339 0.93655 0.89996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.47 9.91 71.98 0.71 -2.75 16 2 C -0.10 -2.55 5.92 30.59 0.18 -2.37 16 3 C -0.05 -1.40 5.60 29.85 0.17 -1.23 16 4 C 0.12 3.13 6.51 43.51 0.28 3.41 16 5 N -0.31 -6.89 12.63 -46.68 -0.59 -7.48 16 6 N -0.44 -5.49 7.29 -56.32 -0.41 -5.90 16 7 H 0.46 1.69 8.96 -213.42 -1.91 -0.22 16 8 C 0.13 1.77 9.63 84.28 0.81 2.58 16 9 C -0.31 -7.71 5.21 -20.15 -0.11 -7.81 16 10 C 0.58 19.38 7.44 86.66 0.65 20.03 16 11 O -0.59 -26.80 15.18 -4.05 -0.06 -26.86 16 12 N -0.60 -16.61 2.98 -823.60 -2.45 -19.06 16 13 C 0.10 1.47 5.49 86.36 0.47 1.94 16 14 C -0.13 -2.05 6.08 30.67 0.19 -1.87 16 15 C -0.11 -2.23 4.78 30.62 0.15 -2.09 16 16 C -0.09 -2.98 2.32 -10.86 -0.03 -3.01 16 17 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 18 C 0.17 6.71 2.72 44.99 0.12 6.83 16 19 H 0.04 1.74 8.08 -2.38 -0.02 1.72 16 20 C -0.16 -5.16 8.79 71.98 0.63 -4.53 16 21 N -0.74 -39.19 5.04 -322.95 -1.63 -40.82 16 22 C -0.23 -13.50 9.93 84.03 0.83 -12.67 16 23 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16 24 C -0.08 -4.90 5.50 84.86 0.47 -4.44 16 25 N -0.97 -63.73 13.06 21.65 0.28 -63.44 16 26 Si 0.97 48.24 29.55 68.60 2.03 50.27 16 27 H -0.26 -12.04 7.11 99.48 0.71 -11.34 16 28 H -0.30 -14.84 7.11 99.48 0.71 -14.14 16 29 H -0.29 -14.65 7.11 99.48 0.71 -13.94 16 30 C 0.13 4.37 5.21 86.22 0.45 4.81 16 31 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 32 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.04 1.21 8.14 -2.38 -0.02 1.19 16 35 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 37 H 0.07 2.33 6.81 -2.39 -0.02 2.32 16 38 H 0.23 0.81 7.35 -2.91 -0.02 0.79 16 39 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.10 1.19 4.80 -2.38 -0.01 1.18 16 41 H 0.11 0.98 8.14 -2.39 -0.02 0.97 16 42 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.09 1.52 6.50 -2.38 -0.02 1.50 16 44 H 0.07 1.43 8.14 -2.39 -0.02 1.42 16 45 H 0.04 1.52 6.32 -2.39 -0.02 1.50 16 46 H 0.08 2.02 6.46 -2.39 -0.02 2.00 16 47 H 0.03 1.19 8.14 -2.39 -0.02 1.18 16 48 H 0.37 21.74 6.16 -92.71 -0.57 21.17 16 49 H 0.25 15.78 8.31 -92.71 -0.77 15.01 16 50 H 0.04 2.10 5.57 -2.38 -0.01 2.09 16 51 H 0.08 2.56 6.16 -2.39 -0.01 2.54 16 Total: -1.00 -86.06 395.13 1.62 -84.44 By element: Atomic # 1 Polarization: 33.52 SS G_CDS: -1.53 Total: 31.99 kcal Atomic # 6 Polarization: -9.13 SS G_CDS: 5.98 Total: -3.15 kcal Atomic # 7 Polarization: -131.90 SS G_CDS: -4.80 Total: -136.70 kcal Atomic # 8 Polarization: -26.80 SS G_CDS: -0.06 Total: -26.86 kcal Atomic # 14 Polarization: 48.24 SS G_CDS: 2.03 Total: 50.27 kcal Total: -86.06 1.62 -84.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667333239.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.682 kcal (2) G-P(sol) polarization free energy of solvation -86.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds