Wall clock time and date at job start Tue Mar 31 2020 20:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47072 * 2 1 4 4 C 1.52996 * 109.47148 * 240.00314 * 2 1 3 5 5 C 1.50697 * 109.47378 * 120.00004 * 2 1 3 6 6 N 1.30445 * 125.99014 * 241.24801 * 5 2 1 7 7 N 1.39933 * 108.89752 * 180.02562 * 6 5 2 8 8 H 0.96998 * 125.75428 * 180.02562 * 7 6 5 9 9 C 1.34255 * 108.49132 * 359.75097 * 7 6 5 10 10 C 1.38047 * 107.41906 * 0.39275 * 9 7 6 11 11 C 1.47429 * 126.41535 * 179.86979 * 10 9 7 12 12 O 1.21610 * 119.99674 * 175.76465 * 11 10 9 13 13 N 1.34769 * 120.00000 * 355.76286 * 11 10 9 14 14 C 1.46502 * 119.99670 * 179.97438 * 13 11 10 15 15 H 1.08999 * 110.05824 * 326.41716 * 14 13 11 16 16 C 1.53880 * 110.03202 * 87.83655 * 14 13 11 17 17 C 1.54467 * 106.68426 * 119.44169 * 16 14 13 18 18 C 1.54893 * 104.10326 * 23.34191 * 17 16 14 19 19 C 1.54267 * 110.03152 * 205.00213 * 14 13 11 20 20 H 1.09002 * 110.59716 * 335.83827 * 19 14 13 21 21 C 1.53003 * 110.48795 * 98.42907 * 19 14 13 22 22 N 1.46497 * 109.46988 * 181.22702 * 21 19 14 23 23 C 1.36941 * 119.99657 * 179.97438 * 22 21 19 24 24 H 1.07996 * 119.99914 * 0.02562 * 23 22 21 25 25 C 1.38816 * 119.99985 * 180.02562 * 23 22 21 26 26 N 1.31622 * 119.99822 * 0.02562 * 25 23 22 27 27 Si 1.86791 * 120.00010 * 180.02562 * 25 23 22 28 28 H 1.48501 * 109.47544 * 0.02562 * 27 25 23 29 29 H 1.48507 * 109.47341 * 120.00191 * 27 25 23 30 30 H 1.48500 * 109.47367 * 239.99889 * 27 25 23 31 31 H 1.09008 * 109.47009 * 308.37704 * 1 2 3 32 32 H 1.08998 * 109.47158 * 68.37578 * 1 2 3 33 33 H 1.08999 * 109.46875 * 188.38168 * 1 2 3 34 34 H 1.08994 * 109.47150 * 180.02562 * 3 2 1 35 35 H 1.09003 * 109.47353 * 300.00080 * 3 2 1 36 36 H 1.08998 * 109.46927 * 60.00028 * 3 2 1 37 37 H 1.09001 * 109.46934 * 291.72332 * 4 2 1 38 38 H 1.09009 * 109.47390 * 51.72003 * 4 2 1 39 39 H 1.08994 * 109.47454 * 171.72086 * 4 2 1 40 40 H 1.08009 * 126.29472 * 180.24797 * 9 7 6 41 41 H 0.96997 * 120.00526 * 0.02562 * 13 11 10 42 42 H 1.08992 * 110.02916 * 238.56454 * 16 14 13 43 43 H 1.09004 * 110.02967 * 359.95312 * 16 14 13 44 44 H 1.09002 * 110.40037 * 264.75754 * 17 16 14 45 45 H 1.08992 * 110.65946 * 142.05466 * 17 16 14 46 46 H 1.09000 * 110.75482 * 203.89580 * 18 17 16 47 47 H 1.08995 * 110.75324 * 80.70296 * 18 17 16 48 48 H 1.08999 * 109.46961 * 301.22659 * 21 19 14 49 49 H 1.09001 * 109.47067 * 61.22938 * 21 19 14 50 50 H 0.97003 * 120.00541 * 0.02562 * 22 21 19 51 51 H 0.97001 * 119.99949 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0324 -0.7104 1.2304 6 7 2.7666 -0.1857 2.1724 7 7 3.0265 -1.1617 3.1410 8 1 3.5497 -1.0343 3.9478 9 6 2.4244 -2.3024 2.7684 10 6 1.7911 -2.0616 1.5656 11 6 1.0051 -3.0311 0.7809 12 8 0.4309 -2.6725 -0.2293 13 7 0.9229 -4.3147 1.1832 14 6 0.1412 -5.2779 0.4037 15 1 -0.7206 -4.7840 -0.0451 16 6 1.0198 -5.9050 -0.6930 17 6 1.0539 -7.4248 -0.4190 18 6 -0.2313 -7.6888 0.4041 19 6 -0.3259 -6.4358 1.3098 20 1 0.3330 -6.5378 2.1721 21 6 -1.7695 -6.2113 1.7642 22 7 -2.1801 -7.3071 2.6455 23 6 -3.4411 -7.3207 3.1792 24 1 -4.1331 -6.5239 2.9500 25 6 -3.8300 -8.3588 4.0148 26 7 -2.9865 -9.3297 4.2945 27 14 -5.5504 -8.3778 4.7421 28 1 -6.2982 -7.1824 4.2760 29 1 -6.2597 -9.6067 4.3038 30 1 -5.4615 -8.3597 6.2243 31 1 -0.3633 0.6381 0.8057 32 1 -0.3633 0.3787 -0.9553 33 1 -0.3633 -1.0167 0.1498 34 1 3.1299 1.4426 -0.0005 35 1 1.6767 1.9564 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 1.8025 -1.7826 -1.1784 38 1 1.5609 -0.2999 -2.1331 39 1 3.1198 -0.5948 -1.3264 40 1 2.4357 -3.2374 3.3089 41 1 1.3805 -4.6007 1.9892 42 1 0.5843 -5.7154 -1.6740 43 1 2.0274 -5.4920 -0.6458 44 1 1.9389 -7.6865 0.1610 45 1 1.0300 -7.9847 -1.3538 46 1 -0.1266 -8.5925 1.0046 47 1 -1.1008 -7.7595 -0.2493 48 1 -1.8380 -5.2664 2.3032 49 1 -2.4241 -6.1810 0.8931 50 1 -1.5584 -8.0227 2.8517 51 1 -3.2581 -10.0549 4.8787 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667765512.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:50 Heat of formation + Delta-G solvation = 29.699675 kcal Electronic energy + Delta-G solvation = -29689.537999 eV Core-core repulsion = 25817.923896 eV Total energy + Delta-G solvation = -3871.614103 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.77127 -39.64015 -37.90510 -36.70769 -34.45747 -33.49148 -31.39351 -31.19918 -30.68512 -28.56994 -27.50468 -27.12690 -27.04518 -24.54444 -23.24816 -22.83457 -22.06876 -20.76686 -20.09958 -19.56947 -18.53771 -18.32790 -17.11202 -16.42890 -16.23068 -15.41473 -15.10491 -15.00583 -14.65686 -14.49453 -14.37527 -14.19529 -13.68162 -13.59422 -13.54235 -13.17835 -12.89752 -12.82879 -12.19464 -12.15547 -12.06515 -11.81281 -11.50240 -11.39768 -11.23447 -11.19528 -11.01919 -10.91931 -10.82759 -10.75584 -10.51457 -10.43722 -10.35072 -10.28789 -9.96233 -9.72892 -9.71023 -9.55514 -9.05722 -8.87288 -8.77380 -6.91295 -5.77125 -3.04972 1.29615 2.02066 2.44933 3.30433 3.41503 3.43006 3.49400 3.51258 4.18644 4.39096 4.55356 4.72252 4.77760 4.87416 4.99348 5.01954 5.07005 5.18204 5.30170 5.35947 5.48222 5.57444 5.64176 5.65304 5.70909 5.72010 5.82080 5.84106 5.88148 5.91524 5.94580 5.97145 6.06638 6.07539 6.09179 6.21668 6.24092 6.30967 6.33493 6.48924 6.54306 6.55165 6.58893 6.73799 6.80040 6.84300 6.94391 7.31486 7.63312 7.71496 8.37568 8.42291 9.53726 10.11679 10.46614 11.45931 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.013555 B = 0.002734 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.137837 B =10239.629458 C =10977.909675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.019 3.981 3 C -0.137 4.137 4 C -0.147 4.147 5 C 0.149 3.851 6 N -0.298 5.298 7 N -0.464 5.464 8 H 0.443 0.557 9 C 0.104 3.896 10 C -0.284 4.284 11 C 0.589 3.411 12 O -0.527 6.527 13 N -0.717 5.717 14 C 0.149 3.851 15 H 0.095 0.905 16 C -0.130 4.130 17 C -0.125 4.125 18 C -0.111 4.111 19 C -0.101 4.101 20 H 0.077 0.923 21 C 0.161 3.839 22 N -0.731 5.731 23 C -0.236 4.236 24 H 0.070 0.930 25 C -0.015 4.015 26 N -0.934 5.934 27 Si 0.905 3.095 28 H -0.280 1.280 29 H -0.292 1.292 30 H -0.292 1.292 31 H 0.043 0.957 32 H 0.058 0.942 33 H 0.095 0.905 34 H 0.055 0.945 35 H 0.058 0.942 36 H 0.056 0.944 37 H 0.090 0.910 38 H 0.058 0.942 39 H 0.042 0.958 40 H 0.186 0.814 41 H 0.395 0.605 42 H 0.068 0.932 43 H 0.064 0.936 44 H 0.061 0.939 45 H 0.063 0.937 46 H 0.073 0.927 47 H 0.071 0.929 48 H 0.017 0.983 49 H 0.021 0.979 50 H 0.383 0.617 51 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.236 15.012 -7.483 23.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.016 3.984 3 C -0.194 4.194 4 C -0.204 4.204 5 C -0.020 4.020 6 N -0.119 5.119 7 N -0.168 5.168 8 H 0.288 0.712 9 C -0.049 4.049 10 C -0.299 4.299 11 C 0.377 3.623 12 O -0.406 6.406 13 N -0.367 5.367 14 C 0.044 3.956 15 H 0.113 0.887 16 C -0.169 4.169 17 C -0.163 4.163 18 C -0.148 4.148 19 C -0.121 4.121 20 H 0.095 0.905 21 C 0.034 3.966 22 N -0.375 5.375 23 C -0.367 4.367 24 H 0.088 0.912 25 C -0.211 4.211 26 N -0.584 5.584 27 Si 0.737 3.263 28 H -0.205 1.205 29 H -0.219 1.219 30 H -0.219 1.219 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.113 0.887 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.109 0.891 38 H 0.077 0.923 39 H 0.061 0.939 40 H 0.203 0.797 41 H 0.229 0.771 42 H 0.086 0.914 43 H 0.082 0.918 44 H 0.080 0.920 45 H 0.081 0.919 46 H 0.092 0.908 47 H 0.090 0.910 48 H 0.035 0.965 49 H 0.039 0.961 50 H 0.217 0.783 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 16.237 16.381 -7.757 24.334 hybrid contribution -0.533 -1.178 1.428 1.926 sum 15.704 15.204 -6.328 22.756 Atomic orbital electron populations 1.22120 0.92461 1.05027 1.01084 1.18984 0.96415 0.93778 0.89193 1.21838 1.01040 0.94842 1.01730 1.22081 0.99348 1.03810 0.95199 1.22459 0.93233 0.91325 0.94952 1.77170 1.21856 1.12573 1.00301 1.46127 1.41803 1.07770 1.21058 0.71248 1.23200 0.93666 0.92363 0.95638 1.20324 1.13544 0.96401 0.99609 1.17217 0.79742 0.81191 0.84144 1.90631 1.46427 1.77925 1.25646 1.46028 1.52779 1.08793 1.29088 1.21686 0.93814 0.88705 0.91360 0.88682 1.22573 0.99888 0.95595 0.98851 1.22420 0.98520 0.95362 0.99987 1.22439 0.97108 0.97670 0.97630 1.22419 0.98585 0.93699 0.97374 0.90480 1.20679 0.90709 0.91943 0.93314 1.42337 1.14154 1.25285 1.55732 1.19287 0.90111 1.05604 1.21710 0.91202 1.24720 0.98118 0.97397 1.00843 1.69666 1.34662 1.12837 1.41196 0.86134 0.84251 0.77276 0.78670 1.20546 1.21881 1.21943 0.93794 0.92312 0.88704 0.92629 0.92341 0.92506 0.89109 0.92274 0.93883 0.79734 0.77105 0.91355 0.91764 0.92005 0.91862 0.90838 0.91033 0.96468 0.96117 0.78296 0.93636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 8.20 37.16 0.30 -1.49 16 2 C 0.02 0.21 0.75 -155.66 -0.12 0.10 16 3 C -0.14 -1.37 7.94 37.16 0.30 -1.08 16 4 C -0.15 -1.65 8.19 37.16 0.30 -1.35 16 5 C 0.15 1.79 5.64 -82.02 -0.46 1.33 16 6 N -0.30 -3.40 11.93 33.89 0.40 -2.99 16 7 N -0.46 -3.73 7.29 30.85 0.22 -3.50 16 8 H 0.44 1.98 8.96 -182.73 -1.64 0.34 16 9 C 0.10 0.84 11.52 -16.56 -0.19 0.65 16 10 C -0.28 -3.21 5.90 -105.06 -0.62 -3.83 16 11 C 0.59 7.43 7.21 -12.52 -0.09 7.34 16 12 O -0.53 -7.78 10.03 5.27 0.05 -7.72 16 13 N -0.72 -8.10 4.97 -53.79 -0.27 -8.36 16 14 C 0.15 1.93 2.82 -66.81 -0.19 1.74 16 15 H 0.10 1.42 7.26 -51.93 -0.38 1.04 16 16 C -0.13 -1.51 6.60 -25.50 -0.17 -1.68 16 17 C -0.13 -1.44 6.85 -24.96 -0.17 -1.61 16 18 C -0.11 -1.59 6.00 -24.73 -0.15 -1.74 16 19 C -0.10 -1.50 2.63 -88.96 -0.23 -1.74 16 20 H 0.08 1.12 7.74 -51.93 -0.40 0.71 16 21 C 0.16 3.15 5.54 -4.04 -0.02 3.13 16 22 N -0.73 -17.99 5.44 -59.91 -0.33 -18.31 16 23 C -0.24 -6.55 9.99 -15.06 -0.15 -6.71 16 24 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 25 C -0.02 -0.43 5.50 -17.43 -0.10 -0.53 16 26 N -0.93 -27.87 13.06 55.49 0.72 -27.15 16 27 Si 0.91 22.36 29.55 -169.99 -5.02 17.34 16 28 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 29 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 30 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 31 H 0.04 0.51 8.13 -51.92 -0.42 0.09 16 32 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 33 H 0.09 1.34 4.71 -51.93 -0.24 1.10 16 34 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.09 1.18 4.64 -51.93 -0.24 0.94 16 38 H 0.06 0.61 8.08 -51.92 -0.42 0.19 16 39 H 0.04 0.45 8.13 -51.93 -0.42 0.03 16 40 H 0.19 0.80 7.48 -52.48 -0.39 0.41 16 41 H 0.39 3.57 7.30 -40.82 -0.30 3.28 16 42 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.06 0.72 7.92 -51.93 -0.41 0.31 16 44 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 46 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 47 H 0.07 1.10 8.02 -51.93 -0.42 0.68 16 48 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 49 H 0.02 0.42 8.10 -51.93 -0.42 0.00 16 50 H 0.38 9.81 7.52 -40.82 -0.31 9.50 16 51 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 398.20 15.07 6.00 6.00 Total: -1.00 -33.20 398.20 -9.72 -42.92 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: -9.76 Total: 9.23 kcal Atomic # 6 Polarization: -5.70 SS G_CDS: -1.75 Total: -7.45 kcal Atomic # 7 Polarization: -61.08 SS G_CDS: 0.76 Total: -60.32 kcal Atomic # 8 Polarization: -7.78 SS G_CDS: 0.05 Total: -7.72 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.20 -9.72 -42.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667765512.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.621 kcal (2) G-P(sol) polarization free energy of solvation -33.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds