Wall clock time and date at job start Tue Mar 31 2020 20:30:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47072 * 2 1 4 4 C 1.52996 * 109.47148 * 240.00314 * 2 1 3 5 5 C 1.50697 * 109.47378 * 120.00004 * 2 1 3 6 6 N 1.30445 * 125.99014 * 241.24801 * 5 2 1 7 7 N 1.39933 * 108.89752 * 180.02562 * 6 5 2 8 8 H 0.96998 * 125.75428 * 180.02562 * 7 6 5 9 9 C 1.34255 * 108.49132 * 359.75097 * 7 6 5 10 10 C 1.38047 * 107.41906 * 0.39275 * 9 7 6 11 11 C 1.47429 * 126.41535 * 179.86979 * 10 9 7 12 12 O 1.21610 * 119.99674 * 175.76465 * 11 10 9 13 13 N 1.34769 * 120.00000 * 355.76286 * 11 10 9 14 14 C 1.46502 * 119.99670 * 179.97438 * 13 11 10 15 15 H 1.08999 * 110.05824 * 326.41716 * 14 13 11 16 16 C 1.53880 * 110.03202 * 87.83655 * 14 13 11 17 17 C 1.54467 * 106.68426 * 119.44169 * 16 14 13 18 18 C 1.54893 * 104.10326 * 23.34191 * 17 16 14 19 19 C 1.54267 * 110.03152 * 205.00213 * 14 13 11 20 20 H 1.09002 * 110.59716 * 335.83827 * 19 14 13 21 21 C 1.53003 * 110.48795 * 98.42907 * 19 14 13 22 22 N 1.46497 * 109.46988 * 181.22702 * 21 19 14 23 23 C 1.36941 * 119.99657 * 179.97438 * 22 21 19 24 24 H 1.07996 * 119.99914 * 0.02562 * 23 22 21 25 25 C 1.38816 * 119.99985 * 180.02562 * 23 22 21 26 26 N 1.31622 * 119.99822 * 0.02562 * 25 23 22 27 27 Si 1.86791 * 120.00010 * 180.02562 * 25 23 22 28 28 H 1.48501 * 109.47544 * 0.02562 * 27 25 23 29 29 H 1.48507 * 109.47341 * 120.00191 * 27 25 23 30 30 H 1.48500 * 109.47367 * 239.99889 * 27 25 23 31 31 H 1.09008 * 109.47009 * 308.37704 * 1 2 3 32 32 H 1.08998 * 109.47158 * 68.37578 * 1 2 3 33 33 H 1.08999 * 109.46875 * 188.38168 * 1 2 3 34 34 H 1.08994 * 109.47150 * 180.02562 * 3 2 1 35 35 H 1.09003 * 109.47353 * 300.00080 * 3 2 1 36 36 H 1.08998 * 109.46927 * 60.00028 * 3 2 1 37 37 H 1.09001 * 109.46934 * 291.72332 * 4 2 1 38 38 H 1.09009 * 109.47390 * 51.72003 * 4 2 1 39 39 H 1.08994 * 109.47454 * 171.72086 * 4 2 1 40 40 H 1.08009 * 126.29472 * 180.24797 * 9 7 6 41 41 H 0.96997 * 120.00526 * 0.02562 * 13 11 10 42 42 H 1.08992 * 110.02916 * 238.56454 * 16 14 13 43 43 H 1.09004 * 110.02967 * 359.95312 * 16 14 13 44 44 H 1.09002 * 110.40037 * 264.75754 * 17 16 14 45 45 H 1.08992 * 110.65946 * 142.05466 * 17 16 14 46 46 H 1.09000 * 110.75482 * 203.89580 * 18 17 16 47 47 H 1.08995 * 110.75324 * 80.70296 * 18 17 16 48 48 H 1.08999 * 109.46961 * 301.22659 * 21 19 14 49 49 H 1.09001 * 109.47067 * 61.22938 * 21 19 14 50 50 H 0.97003 * 120.00541 * 0.02562 * 22 21 19 51 51 H 0.97001 * 119.99949 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0324 -0.7104 1.2304 6 7 2.7666 -0.1857 2.1724 7 7 3.0265 -1.1617 3.1410 8 1 3.5497 -1.0343 3.9478 9 6 2.4244 -2.3024 2.7684 10 6 1.7911 -2.0616 1.5656 11 6 1.0051 -3.0311 0.7809 12 8 0.4309 -2.6725 -0.2293 13 7 0.9229 -4.3147 1.1832 14 6 0.1412 -5.2779 0.4037 15 1 -0.7206 -4.7840 -0.0451 16 6 1.0198 -5.9050 -0.6930 17 6 1.0539 -7.4248 -0.4190 18 6 -0.2313 -7.6888 0.4041 19 6 -0.3259 -6.4358 1.3098 20 1 0.3330 -6.5378 2.1721 21 6 -1.7695 -6.2113 1.7642 22 7 -2.1801 -7.3071 2.6455 23 6 -3.4411 -7.3207 3.1792 24 1 -4.1331 -6.5239 2.9500 25 6 -3.8300 -8.3588 4.0148 26 7 -2.9865 -9.3297 4.2945 27 14 -5.5504 -8.3778 4.7421 28 1 -6.2982 -7.1824 4.2760 29 1 -6.2597 -9.6067 4.3038 30 1 -5.4615 -8.3597 6.2243 31 1 -0.3633 0.6381 0.8057 32 1 -0.3633 0.3787 -0.9553 33 1 -0.3633 -1.0167 0.1498 34 1 3.1299 1.4426 -0.0005 35 1 1.6767 1.9564 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 1.8025 -1.7826 -1.1784 38 1 1.5609 -0.2999 -2.1331 39 1 3.1198 -0.5948 -1.3264 40 1 2.4357 -3.2374 3.3089 41 1 1.3805 -4.6007 1.9892 42 1 0.5843 -5.7154 -1.6740 43 1 2.0274 -5.4920 -0.6458 44 1 1.9389 -7.6865 0.1610 45 1 1.0300 -7.9847 -1.3538 46 1 -0.1266 -8.5925 1.0046 47 1 -1.1008 -7.7595 -0.2493 48 1 -1.8380 -5.2664 2.3032 49 1 -2.4241 -6.1810 0.8931 50 1 -1.5584 -8.0227 2.8517 51 1 -3.2581 -10.0549 4.8787 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667765512.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:49 Heat of formation + Delta-G solvation = 7.914717 kcal Electronic energy + Delta-G solvation = -29690.482665 eV Core-core repulsion = 25817.923896 eV Total energy + Delta-G solvation = -3872.558770 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.54744 -40.65611 -38.98867 -37.59094 -36.25078 -34.54958 -33.26311 -31.97172 -31.50309 -30.14385 -28.49581 -28.04290 -27.90782 -26.29078 -24.34919 -23.73844 -23.49081 -21.74232 -21.20145 -20.57879 -19.56204 -19.15848 -18.91765 -17.45261 -17.25193 -16.56913 -16.31229 -15.99974 -15.92263 -15.55607 -15.46271 -15.16174 -15.03144 -15.01931 -14.65770 -14.48381 -14.33992 -13.73945 -13.40453 -13.17849 -13.03613 -12.99586 -12.85969 -12.72487 -12.48728 -12.31370 -12.17384 -12.10687 -12.02216 -11.89306 -11.88271 -11.78330 -11.56923 -11.54047 -11.38028 -11.35816 -10.92560 -10.54254 -10.50382 -9.95117 -9.65426 -8.97403 -7.94661 -5.22171 0.58911 1.15476 1.47426 1.48167 1.58042 1.82688 2.37080 2.51838 2.56522 3.38886 3.41676 3.53578 3.71078 3.76155 3.97780 4.08175 4.13194 4.15709 4.21765 4.40141 4.47719 4.50208 4.53121 4.57364 4.64838 4.69333 4.72323 4.81978 4.85213 4.86417 4.99872 5.04230 5.05422 5.08562 5.12522 5.16329 5.17737 5.22272 5.30284 5.32139 5.39345 5.49703 5.50274 5.55427 5.58312 5.59929 5.84778 6.28550 6.29307 6.53815 6.77520 7.35572 7.46363 8.11123 8.36400 9.28754 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.013555 B = 0.002734 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.137837 B =10239.629458 C =10977.909675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.015 3.985 3 C -0.130 4.130 4 C -0.140 4.140 5 C 0.134 3.866 6 N -0.320 5.320 7 N -0.450 5.450 8 H 0.459 0.541 9 C 0.129 3.871 10 C -0.314 4.314 11 C 0.587 3.413 12 O -0.554 6.554 13 N -0.709 5.709 14 C 0.159 3.841 15 H 0.072 0.928 16 C -0.122 4.122 17 C -0.112 4.112 18 C -0.112 4.112 19 C -0.089 4.089 20 H 0.087 0.913 21 C 0.162 3.838 22 N -0.739 5.739 23 C -0.244 4.244 24 H 0.069 0.931 25 C -0.071 4.071 26 N -0.966 5.966 27 Si 0.968 3.032 28 H -0.270 1.270 29 H -0.293 1.293 30 H -0.292 1.292 31 H 0.041 0.959 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.054 0.946 35 H 0.070 0.930 36 H 0.051 0.949 37 H 0.073 0.927 38 H 0.064 0.936 39 H 0.047 0.953 40 H 0.226 0.774 41 H 0.408 0.592 42 H 0.066 0.934 43 H 0.075 0.925 44 H 0.077 0.923 45 H 0.075 0.925 46 H 0.058 0.942 47 H 0.056 0.944 48 H 0.012 0.988 49 H 0.012 0.988 50 H 0.377 0.623 51 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.540 15.478 -7.064 24.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.012 3.988 3 C -0.187 4.187 4 C -0.198 4.198 5 C -0.034 4.034 6 N -0.142 5.142 7 N -0.155 5.155 8 H 0.307 0.693 9 C -0.025 4.025 10 C -0.329 4.329 11 C 0.377 3.623 12 O -0.435 6.435 13 N -0.360 5.360 14 C 0.054 3.946 15 H 0.090 0.910 16 C -0.160 4.160 17 C -0.150 4.150 18 C -0.150 4.150 19 C -0.108 4.108 20 H 0.105 0.895 21 C 0.036 3.964 22 N -0.382 5.382 23 C -0.376 4.376 24 H 0.087 0.913 25 C -0.264 4.264 26 N -0.617 5.617 27 Si 0.798 3.202 28 H -0.195 1.195 29 H -0.220 1.220 30 H -0.219 1.219 31 H 0.060 0.940 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.073 0.927 35 H 0.089 0.911 36 H 0.070 0.930 37 H 0.092 0.908 38 H 0.083 0.917 39 H 0.066 0.934 40 H 0.243 0.757 41 H 0.244 0.756 42 H 0.085 0.915 43 H 0.094 0.906 44 H 0.096 0.904 45 H 0.094 0.906 46 H 0.077 0.923 47 H 0.074 0.926 48 H 0.030 0.970 49 H 0.030 0.970 50 H 0.210 0.790 51 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 17.569 16.887 -7.327 25.447 hybrid contribution -0.935 -1.283 1.316 2.061 sum 16.635 15.604 -6.012 23.587 Atomic orbital electron populations 1.22040 0.93274 1.03571 1.01321 1.19003 0.95775 0.94593 0.89385 1.21766 1.00910 0.94004 1.02043 1.21995 0.99625 1.02721 0.95472 1.22568 0.93668 0.91886 0.95284 1.77104 1.22341 1.13827 1.00955 1.46164 1.41201 1.07212 1.20954 0.69264 1.23733 0.91192 0.93340 0.94283 1.20312 1.15353 0.96077 1.01206 1.17426 0.79500 0.81458 0.83951 1.90623 1.47556 1.78378 1.26923 1.45866 1.52500 1.08231 1.29433 1.21410 0.93783 0.88086 0.91348 0.90961 1.22493 0.99998 0.95519 0.98031 1.22349 0.97194 0.95229 1.00181 1.22387 0.98345 0.96706 0.97526 1.22258 0.95531 0.94933 0.98119 0.89505 1.20772 0.93642 0.90104 0.91903 1.42481 1.13206 1.26266 1.56214 1.19616 0.91316 1.05321 1.21324 0.91313 1.25475 1.01739 0.97371 1.01806 1.69798 1.36346 1.13436 1.42079 0.85145 0.80114 0.77322 0.77627 1.19487 1.21985 1.21860 0.93985 0.91664 0.90822 0.92662 0.91146 0.93030 0.90793 0.91745 0.93424 0.75746 0.75575 0.91531 0.90640 0.90449 0.90642 0.92278 0.92564 0.97031 0.97033 0.79049 0.93962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.51 8.20 71.98 0.59 -2.92 16 2 C 0.01 0.33 0.75 -52.93 -0.04 0.29 16 3 C -0.13 -2.50 7.94 71.98 0.57 -1.93 16 4 C -0.14 -3.12 8.19 71.98 0.59 -2.54 16 5 C 0.13 3.12 5.64 43.51 0.25 3.37 16 6 N -0.32 -6.87 11.93 -46.68 -0.56 -7.43 16 7 N -0.45 -6.11 7.29 -56.31 -0.41 -6.52 16 8 H 0.46 2.79 8.96 -213.43 -1.91 0.88 16 9 C 0.13 1.72 11.52 84.28 0.97 2.69 16 10 C -0.31 -6.69 5.90 -20.15 -0.12 -6.81 16 11 C 0.59 14.39 7.21 86.67 0.63 15.02 16 12 O -0.55 -16.52 10.03 -4.06 -0.04 -16.56 16 13 N -0.71 -14.98 4.97 -442.35 -2.20 -17.18 16 14 C 0.16 3.98 2.82 45.72 0.13 4.11 16 15 H 0.07 2.18 7.26 -2.39 -0.02 2.16 16 16 C -0.12 -2.61 6.60 31.39 0.21 -2.40 16 17 C -0.11 -2.33 6.85 31.74 0.22 -2.11 16 18 C -0.11 -3.15 6.00 31.89 0.19 -2.96 16 19 C -0.09 -2.58 2.63 -9.72 -0.03 -2.61 16 20 H 0.09 2.38 7.74 -2.39 -0.02 2.36 16 21 C 0.16 6.41 5.54 86.38 0.48 6.89 16 22 N -0.74 -36.69 5.44 -343.45 -1.87 -38.56 16 23 C -0.24 -13.61 9.99 84.03 0.84 -12.77 16 24 H 0.07 3.78 7.83 -2.91 -0.02 3.75 16 25 C -0.07 -4.07 5.50 84.86 0.47 -3.60 16 26 N -0.97 -57.97 13.06 21.65 0.28 -57.69 16 27 Si 0.97 46.02 29.55 68.60 2.03 48.05 16 28 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 29 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 30 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 31 H 0.04 0.99 8.13 -2.38 -0.02 0.97 16 32 H 0.06 1.43 8.08 -2.39 -0.02 1.41 16 33 H 0.07 2.15 4.71 -2.39 -0.01 2.14 16 34 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.07 1.94 4.64 -2.39 -0.01 1.93 16 38 H 0.06 1.31 8.08 -2.38 -0.02 1.29 16 39 H 0.05 0.98 8.13 -2.39 -0.02 0.96 16 40 H 0.23 0.98 7.48 -2.91 -0.02 0.96 16 41 H 0.41 6.34 7.30 -92.71 -0.68 5.66 16 42 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.07 1.49 7.92 -2.38 -0.02 1.47 16 44 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 46 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 47 H 0.06 1.74 8.02 -2.39 -0.02 1.72 16 48 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 49 H 0.01 0.49 8.10 -2.39 -0.02 0.47 16 50 H 0.38 19.51 7.52 -92.71 -0.70 18.82 16 51 H 0.25 14.60 8.31 -92.71 -0.77 13.82 16 Total: -1.00 -72.29 398.20 0.84 -71.45 By element: Atomic # 1 Polarization: 35.06 SS G_CDS: -2.33 Total: 32.73 kcal Atomic # 6 Polarization: -14.23 SS G_CDS: 5.94 Total: -8.30 kcal Atomic # 7 Polarization: -122.63 SS G_CDS: -4.75 Total: -127.38 kcal Atomic # 8 Polarization: -16.52 SS G_CDS: -0.04 Total: -16.56 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.05 kcal Total: -72.29 0.84 -71.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667765512.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.365 kcal (2) G-P(sol) polarization free energy of solvation -72.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds