Wall clock time and date at job start Tue Mar 31 2020 18:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.46799 * 2 1 4 4 C 1.39678 * 126.06703 * 125.27138 * 3 2 1 5 5 C 1.38403 * 105.35857 * 180.14401 * 4 3 2 6 6 C 1.47166 * 126.87976 * 179.91494 * 5 4 3 7 7 O 1.21632 * 119.99610 * 184.98178 * 6 5 4 8 8 N 1.34772 * 120.00431 * 4.98159 * 6 5 4 9 9 C 1.46496 * 120.00329 * 174.99637 * 8 6 5 10 10 H 1.09002 * 109.46896 * 35.27434 * 9 8 6 11 11 C 1.52999 * 109.46994 * 275.27676 * 9 8 6 12 12 C 1.53003 * 109.47018 * 179.97438 * 11 9 8 13 13 C 1.52998 * 109.47271 * 60.00054 * 12 11 9 14 14 C 1.52999 * 109.47056 * 299.99923 * 13 12 11 15 15 C 1.52998 * 109.47332 * 155.27706 * 9 8 6 16 16 H 1.09002 * 109.47353 * 60.00007 * 15 9 8 17 17 C 1.52999 * 109.47056 * 299.99931 * 15 9 8 18 18 N 1.46498 * 109.47382 * 174.99874 * 17 15 9 19 19 C 1.36940 * 120.00309 * 179.97438 * 18 17 15 20 20 H 1.07995 * 119.99805 * 0.02562 * 19 18 17 21 21 C 1.38810 * 119.99950 * 180.02562 * 19 18 17 22 22 N 1.31618 * 119.99883 * 180.02562 * 21 19 18 23 23 Si 1.86794 * 120.00273 * 359.97438 * 21 19 18 24 24 H 1.48502 * 109.47126 * 90.00147 * 23 21 19 25 25 H 1.48502 * 109.47397 * 210.00421 * 23 21 19 26 26 H 1.48503 * 109.47038 * 330.00513 * 23 21 19 27 27 N 1.36592 * 106.23112 * 359.65556 * 5 4 3 28 28 C 1.46508 * 125.18894 * 180.20812 * 27 5 4 29 29 N 1.28434 * 109.62279 * 0.21971 * 27 5 4 30 30 H 1.08998 * 109.47183 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47133 * 299.99794 * 1 2 3 32 32 H 1.09004 * 109.47217 * 59.99609 * 1 2 3 33 33 H 1.08994 * 109.46947 * 240.00723 * 2 1 3 34 34 H 1.08997 * 109.47380 * 120.00047 * 2 1 3 35 35 H 1.07999 * 127.31720 * 0.06322 * 4 3 2 36 36 H 0.97001 * 119.99654 * 355.27175 * 8 6 5 37 37 H 1.09002 * 109.47101 * 299.99632 * 11 9 8 38 38 H 1.08996 * 109.47384 * 59.99965 * 11 9 8 39 39 H 1.09004 * 109.47063 * 180.02562 * 12 11 9 40 40 H 1.09002 * 109.46934 * 299.99796 * 12 11 9 41 41 H 1.09002 * 109.47353 * 59.99998 * 13 12 11 42 42 H 1.08998 * 109.47143 * 179.97438 * 13 12 11 43 43 H 1.08996 * 109.47384 * 179.97438 * 14 13 12 44 44 H 1.09002 * 109.47101 * 300.00229 * 14 13 12 45 45 H 1.09005 * 109.47361 * 295.00342 * 17 15 9 46 46 H 1.09000 * 109.47004 * 54.99845 * 17 15 9 47 47 H 0.97003 * 120.00005 * 0.02562 * 18 17 15 48 48 H 0.96998 * 120.00037 * 179.97438 * 22 21 19 49 49 H 1.09000 * 109.47109 * 94.52620 * 28 27 5 50 50 H 1.08996 * 109.46744 * 214.52692 * 28 27 5 51 51 H 1.09003 * 109.46877 * 334.52587 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.9210 1.9789 0.9218 5 6 3.0834 3.2946 0.5242 6 6 3.9246 4.3150 1.1700 7 8 3.9056 5.4625 0.7672 8 7 4.7159 3.9780 2.2076 9 6 5.6338 4.9659 2.7799 10 1 5.1735 5.9533 2.7438 11 6 6.9346 4.9800 1.9745 12 6 7.8931 6.0122 2.5718 13 6 8.1973 5.6446 4.0254 14 6 6.8965 5.6305 4.8308 15 6 5.9380 4.5977 4.2334 16 1 6.3983 3.6103 4.2694 17 6 4.6372 4.5836 5.0388 18 7 4.9105 4.1158 6.3999 19 6 3.8907 4.0200 7.3088 20 1 2.8849 4.2889 7.0221 21 6 4.1499 3.5773 8.5986 22 7 3.1697 3.4847 9.4720 23 14 5.8896 3.1115 9.0944 24 1 6.5884 4.3070 9.6307 25 1 5.8412 2.0565 10.1384 26 1 6.6224 2.6007 7.9080 27 7 2.3112 3.4545 -0.5911 28 6 2.1807 4.6968 -1.3566 29 7 1.7168 2.3497 -0.8662 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.8933 -0.5137 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 3.3822 1.4883 1.7662 36 1 4.6804 3.0801 2.5729 37 1 7.3950 3.9926 2.0105 38 1 6.7180 5.2423 0.9390 39 1 8.8197 6.0226 1.9977 40 1 7.4325 6.9995 2.5354 41 1 8.6579 4.6573 4.0618 42 1 8.8805 6.3797 4.4508 43 1 7.1131 5.3682 5.8663 44 1 6.4360 6.6178 4.7944 45 1 4.2226 5.5910 5.0772 46 1 3.9215 3.9142 4.5614 47 1 5.8141 3.8746 6.6576 48 1 3.3507 3.1750 10.3732 49 1 2.8885 4.6889 -2.1855 50 1 1.1660 4.7786 -1.7461 51 1 2.3904 5.5471 -0.7077 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001669974064.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:24 Heat of formation + Delta-G solvation = 29.179939 kcal Electronic energy + Delta-G solvation = -29533.054388 eV Core-core repulsion = 25661.417748 eV Total energy + Delta-G solvation = -3871.636640 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 5.83 seconds Orbital eigenvalues (eV) -42.68758 -40.09008 -38.24095 -35.05523 -34.83612 -34.29540 -32.08838 -31.90548 -31.16141 -30.08268 -29.19152 -27.06276 -25.55426 -23.87389 -23.57337 -22.73744 -21.96050 -20.81440 -20.70234 -20.26380 -19.20807 -17.93123 -17.47630 -16.48321 -16.44448 -15.92818 -15.06725 -14.89740 -14.52810 -14.44139 -14.38000 -14.24480 -14.06169 -13.99850 -13.73045 -13.44974 -13.05631 -13.01272 -12.79456 -12.68225 -12.60618 -12.26115 -12.09886 -11.76202 -11.63329 -11.43100 -11.29128 -11.10171 -11.01531 -10.85049 -10.68577 -10.56790 -10.41091 -10.17979 -10.10957 -9.96262 -9.59674 -9.31462 -9.02877 -8.98713 -8.88968 -7.24548 -5.77977 -3.13680 1.13846 2.22908 2.41183 3.09923 3.11327 3.34381 3.36911 3.43196 4.26666 4.39458 4.57030 4.60774 4.71801 4.78547 4.89573 4.95061 4.98568 5.06681 5.14605 5.17753 5.19751 5.29518 5.36316 5.41446 5.46527 5.48571 5.53342 5.53621 5.56261 5.61419 5.71985 5.75576 5.78950 5.94701 5.97600 6.01791 6.08015 6.08782 6.12622 6.20783 6.33367 6.39477 6.39600 6.46442 6.61144 6.63494 6.75558 7.34511 7.91698 7.98463 8.03957 8.40896 9.19944 9.91987 10.11744 11.40562 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.009282 B = 0.003480 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3015.730407 B = 8043.689425 C =10259.462463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.036 4.036 3 C 0.026 3.974 4 C -0.182 4.182 5 C -0.036 4.036 6 C 0.595 3.405 7 O -0.545 6.545 8 N -0.703 5.703 9 C 0.156 3.844 10 H 0.093 0.907 11 C -0.127 4.127 12 C -0.114 4.114 13 C -0.123 4.123 14 C -0.108 4.108 15 C -0.105 4.105 16 H 0.076 0.924 17 C 0.162 3.838 18 N -0.754 5.754 19 C -0.244 4.244 20 H 0.089 0.911 21 C 0.005 3.995 22 N -0.934 5.934 23 Si 0.883 3.117 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.277 1.277 27 N -0.258 5.258 28 C 0.082 3.918 29 N -0.276 5.276 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.162 0.838 36 H 0.406 0.594 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.061 0.939 40 H 0.064 0.936 41 H 0.061 0.939 42 H 0.062 0.938 43 H 0.073 0.927 44 H 0.066 0.934 45 H 0.027 0.973 46 H 0.027 0.973 47 H 0.361 0.639 48 H 0.259 0.741 49 H 0.081 0.919 50 H 0.091 0.909 51 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.694 -1.521 -22.386 22.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.075 4.075 3 C -0.130 4.130 4 C -0.211 4.211 5 C -0.164 4.164 6 C 0.380 3.620 7 O -0.423 6.423 8 N -0.353 5.353 9 C 0.052 3.948 10 H 0.112 0.888 11 C -0.165 4.165 12 C -0.152 4.152 13 C -0.160 4.160 14 C -0.147 4.147 15 C -0.124 4.124 16 H 0.094 0.906 17 C 0.035 3.965 18 N -0.400 5.400 19 C -0.374 4.374 20 H 0.107 0.893 21 C -0.191 4.191 22 N -0.582 5.582 23 Si 0.714 3.286 24 H -0.211 1.211 25 H -0.217 1.217 26 H -0.204 1.204 27 N -0.045 5.045 28 C -0.058 4.058 29 N -0.109 5.109 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.094 0.906 34 H 0.102 0.898 35 H 0.179 0.821 36 H 0.241 0.759 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.091 0.909 44 H 0.085 0.915 45 H 0.045 0.955 46 H 0.045 0.955 47 H 0.194 0.806 48 H 0.069 0.931 49 H 0.100 0.900 50 H 0.109 0.891 51 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 3.807 -0.327 -23.613 23.920 hybrid contribution 1.593 -0.924 1.393 2.309 sum 5.400 -1.251 -22.220 22.901 Atomic orbital electron populations 1.21716 0.94563 1.01685 1.02508 1.19879 0.96261 0.88336 1.03058 1.21979 0.99991 0.96727 0.94320 1.22188 1.03568 0.92466 1.02924 1.21382 1.03687 0.96501 0.94848 1.16863 0.78849 0.86209 0.80042 1.90746 1.67228 1.19793 1.64559 1.45767 1.40012 1.16526 1.32970 1.21055 0.88747 0.93038 0.91991 0.88848 1.21912 0.95267 0.99937 0.99407 1.21479 0.98729 0.98958 0.96070 1.21609 0.97773 1.01592 0.95037 1.21524 0.94354 0.99132 0.99648 1.21668 0.97977 1.00085 0.92670 0.90588 1.20648 0.93020 0.97606 0.85220 1.42703 1.07689 1.80973 1.08612 1.19052 0.90179 1.37376 0.90750 0.89320 1.24664 0.96813 1.01484 0.96122 1.69701 1.30358 1.53198 1.04946 0.86567 0.85846 0.78241 0.77972 1.21069 1.21735 1.20350 1.45518 1.30296 1.09456 1.19233 1.22407 1.04090 0.82227 0.97073 1.73072 1.19624 0.92708 1.25546 0.92283 0.92519 0.92282 0.90594 0.89844 0.82088 0.75864 0.91734 0.91758 0.92006 0.91709 0.92029 0.91929 0.90851 0.91480 0.95461 0.95503 0.80644 0.93060 0.90027 0.89077 0.86543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.87 37.16 0.37 -0.91 16 2 C -0.04 -0.32 6.51 -27.88 -0.18 -0.51 16 3 C 0.03 0.31 6.49 -82.47 -0.54 -0.23 16 4 C -0.18 -2.14 10.43 -38.98 -0.41 -2.54 16 5 C -0.04 -0.46 6.96 -82.06 -0.57 -1.03 16 6 C 0.59 8.03 7.76 -12.64 -0.10 7.93 16 7 O -0.54 -8.38 14.22 5.25 0.07 -8.30 16 8 N -0.70 -8.51 4.29 -54.97 -0.24 -8.75 16 9 C 0.16 1.94 1.94 -67.93 -0.13 1.81 16 10 H 0.09 1.32 7.52 -51.93 -0.39 0.93 16 11 C -0.13 -1.35 5.49 -26.73 -0.15 -1.50 16 12 C -0.11 -1.13 5.92 -26.73 -0.16 -1.29 16 13 C -0.12 -1.31 5.92 -26.73 -0.16 -1.47 16 14 C -0.11 -1.45 5.08 -26.70 -0.14 -1.59 16 15 C -0.10 -1.45 1.81 -90.59 -0.16 -1.62 16 16 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 17 C 0.16 2.99 5.56 -4.04 -0.02 2.97 16 18 N -0.75 -17.24 5.13 -59.91 -0.31 -17.55 16 19 C -0.24 -6.82 10.47 -15.06 -0.16 -6.98 16 20 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 21 C 0.00 0.14 5.50 -17.43 -0.10 0.05 16 22 N -0.93 -29.21 13.97 55.49 0.78 -28.43 16 23 Si 0.88 21.68 27.73 -169.99 -4.71 16.96 16 24 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 26 H -0.28 -6.31 6.52 56.52 0.37 -5.95 16 27 N -0.26 -3.26 3.75 -63.88 -0.24 -3.50 16 28 C 0.08 0.79 11.01 59.85 0.66 1.45 16 29 N -0.28 -3.57 11.87 33.64 0.40 -3.17 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.08 0.63 8.12 -51.93 -0.42 0.21 16 35 H 0.16 1.52 7.58 -52.49 -0.40 1.12 16 36 H 0.41 4.40 7.42 -40.82 -0.30 4.09 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.07 1.11 7.18 -51.93 -0.37 0.74 16 44 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 45 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.03 0.51 7.30 -51.93 -0.38 0.13 16 47 H 0.36 7.98 4.71 -40.82 -0.19 7.79 16 48 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 49 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 50 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 51 H 0.12 1.22 5.97 -51.93 -0.31 0.91 16 LS Contribution 402.75 15.07 6.07 6.07 Total: -1.00 -33.63 402.75 -8.82 -42.45 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: -8.70 Total: 9.67 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: -1.94 Total: -5.46 kcal Atomic # 7 Polarization: -61.79 SS G_CDS: 0.39 Total: -61.40 kcal Atomic # 8 Polarization: -8.38 SS G_CDS: 0.07 Total: -8.30 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.71 Total: 16.96 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.63 -8.82 -42.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669974064.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.629 kcal (2) G-P(sol) polarization free energy of solvation -33.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.83 seconds