Wall clock time and date at job start Tue Mar 31 2020 18:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50694 * 109.47524 * 2 1 4 4 C 1.39677 * 126.07150 * 125.26757 * 3 2 1 5 5 C 1.38402 * 105.35982 * 180.10995 * 4 3 2 6 6 C 1.47165 * 126.88361 * 179.91409 * 5 4 3 7 7 O 1.21633 * 120.00159 * 184.54319 * 6 5 4 8 8 N 1.34778 * 120.00185 * 4.55280 * 6 5 4 9 9 C 1.46499 * 120.00305 * 174.39611 * 8 6 5 10 10 H 1.09002 * 109.46969 * 324.99318 * 9 8 6 11 11 C 1.52992 * 109.47243 * 84.99492 * 9 8 6 12 12 C 1.53003 * 109.47214 * 180.02562 * 11 9 8 13 13 C 1.53001 * 109.46921 * 299.99906 * 12 11 9 14 14 C 1.53006 * 109.47127 * 59.99875 * 13 12 11 15 15 C 1.52995 * 109.46987 * 205.00000 * 9 8 6 16 16 H 1.09002 * 109.47202 * 299.99669 * 15 9 8 17 17 C 1.52999 * 109.47800 * 59.99713 * 15 9 8 18 18 N 1.46499 * 109.47537 * 185.00103 * 17 15 9 19 19 C 1.36936 * 120.00099 * 179.97438 * 18 17 15 20 20 H 1.07997 * 120.00138 * 0.02562 * 19 18 17 21 21 C 1.38811 * 119.99953 * 179.97438 * 19 18 17 22 22 N 1.31621 * 119.99906 * 179.97438 * 21 19 18 23 23 Si 1.86804 * 119.99940 * 0.02562 * 21 19 18 24 24 H 1.48491 * 109.47470 * 89.99425 * 23 21 19 25 25 H 1.48507 * 109.46717 * 209.99527 * 23 21 19 26 26 H 1.48501 * 109.46921 * 329.98822 * 23 21 19 27 27 N 1.36597 * 106.23479 * 359.64642 * 5 4 3 28 28 C 1.46500 * 125.19307 * 180.20457 * 27 5 4 29 29 N 1.28447 * 109.61428 * 0.23209 * 27 5 4 30 30 H 1.09001 * 109.47115 * 300.00390 * 1 2 3 31 31 H 1.09005 * 109.46884 * 59.99530 * 1 2 3 32 32 H 1.08992 * 109.47731 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47115 * 239.99610 * 2 1 3 34 34 H 1.09010 * 109.46995 * 119.99998 * 2 1 3 35 35 H 1.08002 * 127.32253 * 0.02562 * 4 3 2 36 36 H 0.97004 * 119.99232 * 354.38854 * 8 6 5 37 37 H 1.09003 * 109.47482 * 299.99828 * 11 9 8 38 38 H 1.09002 * 109.47281 * 60.00016 * 11 9 8 39 39 H 1.09001 * 109.47315 * 180.02562 * 12 11 9 40 40 H 1.09002 * 109.47153 * 59.99730 * 12 11 9 41 41 H 1.09002 * 109.47557 * 300.00072 * 13 12 11 42 42 H 1.08999 * 109.46894 * 179.97438 * 13 12 11 43 43 H 1.09002 * 109.46741 * 59.99697 * 14 13 12 44 44 H 1.08995 * 109.47049 * 179.97438 * 14 13 12 45 45 H 1.09002 * 109.46406 * 305.00006 * 17 15 9 46 46 H 1.08996 * 109.46846 * 64.99867 * 17 15 9 47 47 H 0.96997 * 119.99673 * 359.97438 * 18 17 15 48 48 H 0.97004 * 119.99534 * 180.02562 * 22 21 19 49 49 H 1.09003 * 109.46464 * 84.21754 * 28 27 5 50 50 H 1.08998 * 109.47184 * 204.20851 * 28 27 5 51 51 H 1.08993 * 109.47276 * 324.21168 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.9212 1.9787 0.9218 5 6 3.0843 3.2942 0.5236 6 6 3.9257 4.3145 1.1691 7 8 3.9135 5.4602 0.7608 8 7 4.7101 3.9795 2.2127 9 6 5.6381 4.9627 2.7769 10 1 6.0294 5.5930 1.9783 11 6 4.9016 5.8318 3.7981 12 6 5.8707 6.8590 4.3869 13 6 7.0276 6.1323 5.0757 14 6 7.7642 5.2631 4.0544 15 6 6.7947 4.2356 3.4657 16 1 6.4035 3.6052 4.2643 17 6 7.5313 3.3664 2.4445 18 7 8.5622 2.5796 3.1260 19 6 9.3542 1.7222 2.4099 20 1 9.2191 1.6262 1.3427 21 6 10.3314 0.9771 3.0556 22 7 11.0922 0.1526 2.3674 23 14 10.5656 1.1437 4.9014 24 1 9.7032 0.1578 5.6008 25 1 11.9877 0.8890 5.2448 26 1 10.1923 2.5170 5.3257 27 7 2.3127 3.4540 -0.5921 28 6 2.1830 4.6960 -1.3582 29 7 1.7177 2.3492 -0.8667 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0275 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8901 35 1 3.3819 1.4884 1.7666 36 1 4.6600 3.0873 2.5902 37 1 4.0776 6.3499 3.3074 38 1 4.5103 5.2015 4.5967 39 1 5.3461 7.4779 5.1148 40 1 6.2616 7.4893 3.5881 41 1 6.6367 5.5021 5.8745 42 1 7.7182 6.8642 5.4948 43 1 8.1550 5.8934 3.2556 44 1 8.5886 4.7458 4.5450 45 1 6.8222 2.6947 1.9606 46 1 7.9979 4.0042 1.6939 47 1 8.6838 2.6661 4.0844 48 1 11.7749 -0.3683 2.8187 49 1 3.0058 4.7718 -2.0691 50 1 1.2359 4.6928 -1.8977 51 1 2.2108 5.5471 -0.6779 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001669974066.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:00 Heat of formation + Delta-G solvation = 7.439543 kcal Electronic energy + Delta-G solvation = -29554.588592 eV Core-core repulsion = 25682.009218 eV Total energy + Delta-G solvation = -3872.579375 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 4.35 seconds Orbital eigenvalues (eV) -43.59745 -41.14350 -39.32645 -36.57694 -35.86862 -35.26735 -33.84277 -32.82526 -32.08858 -31.60484 -30.19567 -27.87279 -27.11351 -24.83077 -24.40229 -24.31765 -23.01279 -22.11412 -21.72706 -21.19535 -20.25782 -19.65225 -18.65998 -17.49728 -17.35497 -16.96530 -16.59005 -16.16589 -15.73416 -15.69300 -15.42987 -15.17573 -14.98843 -14.87229 -14.73729 -14.64187 -14.59636 -14.28931 -13.81075 -13.73134 -13.68903 -13.43310 -13.05274 -13.00684 -12.75960 -12.65883 -12.35357 -12.21073 -12.17759 -12.15034 -11.90562 -11.83489 -11.57609 -11.52107 -11.38474 -11.22268 -11.04697 -10.91513 -10.31749 -9.98475 -9.86928 -9.28701 -8.01745 -5.35757 0.16929 1.34439 1.38954 1.43514 1.50870 1.51461 2.08121 2.17247 2.49811 3.29607 3.37046 3.46051 3.50154 3.74150 3.86639 3.93127 3.99608 4.23711 4.24422 4.26302 4.28718 4.30571 4.41965 4.45049 4.46698 4.50261 4.52654 4.55772 4.59142 4.75908 4.83691 4.84896 4.87324 5.04606 5.09920 5.12182 5.13447 5.23145 5.23625 5.28751 5.30415 5.36510 5.40601 5.44417 5.51303 5.58781 5.75285 5.75797 6.21649 6.35599 6.96458 7.05940 7.09051 7.83763 8.05116 9.20057 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.009245 B = 0.003486 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3027.947469 B = 8029.522857 C =10131.167226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.039 4.039 3 C 0.017 3.983 4 C -0.183 4.183 5 C -0.055 4.055 6 C 0.594 3.406 7 O -0.567 6.567 8 N -0.697 5.697 9 C 0.165 3.835 10 H 0.072 0.928 11 C -0.118 4.118 12 C -0.111 4.111 13 C -0.115 4.115 14 C -0.110 4.110 15 C -0.090 4.090 16 H 0.091 0.909 17 C 0.161 3.839 18 N -0.751 5.751 19 C -0.236 4.236 20 H 0.049 0.951 21 C -0.064 4.064 22 N -0.986 5.986 23 Si 0.957 3.043 24 H -0.274 1.274 25 H -0.299 1.299 26 H -0.247 1.247 27 N -0.267 5.267 28 C 0.085 3.915 29 N -0.291 5.291 30 H 0.050 0.950 31 H 0.047 0.953 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.100 0.900 35 H 0.182 0.818 36 H 0.413 0.587 37 H 0.060 0.940 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.059 0.941 41 H 0.072 0.928 42 H 0.073 0.927 43 H 0.058 0.942 44 H 0.056 0.944 45 H 0.027 0.973 46 H 0.009 0.991 47 H 0.368 0.632 48 H 0.258 0.742 49 H 0.086 0.914 50 H 0.113 0.887 51 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.255 9.752 2.940 24.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.078 4.078 3 C -0.139 4.139 4 C -0.211 4.211 5 C -0.183 4.183 6 C 0.380 3.620 7 O -0.447 6.447 8 N -0.347 5.347 9 C 0.060 3.940 10 H 0.090 0.910 11 C -0.157 4.157 12 C -0.149 4.149 13 C -0.152 4.152 14 C -0.148 4.148 15 C -0.109 4.109 16 H 0.110 0.890 17 C 0.035 3.965 18 N -0.397 5.397 19 C -0.367 4.367 20 H 0.067 0.933 21 C -0.255 4.255 22 N -0.636 5.636 23 Si 0.783 3.217 24 H -0.200 1.200 25 H -0.226 1.226 26 H -0.171 1.171 27 N -0.054 5.054 28 C -0.055 4.055 29 N -0.125 5.125 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.118 0.882 35 H 0.199 0.801 36 H 0.250 0.750 37 H 0.078 0.922 38 H 0.096 0.904 39 H 0.100 0.900 40 H 0.077 0.923 41 H 0.091 0.909 42 H 0.092 0.908 43 H 0.076 0.924 44 H 0.075 0.925 45 H 0.045 0.955 46 H 0.027 0.973 47 H 0.203 0.797 48 H 0.067 0.933 49 H 0.105 0.895 50 H 0.131 0.869 51 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -22.823 10.836 1.400 25.303 hybrid contribution 1.302 -0.786 1.126 1.893 sum -21.521 10.050 2.527 23.886 Atomic orbital electron populations 1.21660 0.93966 1.02589 1.01554 1.20032 0.96645 0.86860 1.04246 1.22503 0.99910 0.97666 0.93836 1.22520 1.02963 0.91931 1.03732 1.21484 1.04243 0.97092 0.95512 1.16956 0.79114 0.86000 0.79883 1.90751 1.67582 1.20853 1.65498 1.45723 1.39331 1.17412 1.32281 1.20941 0.87937 0.89324 0.95772 0.91004 1.21839 0.98226 0.97694 0.97936 1.21477 0.95982 0.97305 1.00151 1.21562 0.97345 0.98763 0.97561 1.21525 0.97428 0.96833 0.99046 1.21535 0.94757 0.96859 0.97781 0.89037 1.20765 0.89552 0.92160 0.94056 1.42621 1.40716 1.49761 1.06650 1.18986 1.10530 1.14795 0.92384 0.93301 1.25544 0.98152 0.98817 1.02970 1.69906 1.25216 1.31397 1.37103 0.85388 0.76747 0.79262 0.80263 1.19996 1.22554 1.17087 1.45803 1.30276 1.10029 1.19339 1.22442 1.05360 0.80802 0.96860 1.73070 1.20434 0.93168 1.25867 0.93080 0.93418 0.90459 0.90184 0.88168 0.80084 0.74998 0.92165 0.90364 0.89992 0.92256 0.90928 0.90848 0.92367 0.92480 0.95496 0.97320 0.79749 0.93339 0.89512 0.86881 0.87830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 9.88 71.98 0.71 -1.38 16 2 C -0.04 -0.66 6.51 29.85 0.19 -0.47 16 3 C 0.02 0.39 6.49 43.05 0.28 0.67 16 4 C -0.18 -4.16 10.43 22.66 0.24 -3.93 16 5 C -0.05 -1.42 6.96 40.79 0.28 -1.13 16 6 C 0.59 15.85 7.75 86.59 0.67 16.52 16 7 O -0.57 -17.34 14.45 -4.13 -0.06 -17.40 16 8 N -0.70 -16.12 4.29 -446.07 -1.91 -18.03 16 9 C 0.16 3.88 1.86 44.99 0.08 3.96 16 10 H 0.07 2.00 7.66 -2.39 -0.02 1.98 16 11 C -0.12 -2.26 5.49 30.59 0.17 -2.10 16 12 C -0.11 -1.89 5.92 30.60 0.18 -1.71 16 13 C -0.11 -2.10 5.92 30.60 0.18 -1.92 16 14 C -0.11 -2.75 5.08 30.61 0.16 -2.60 16 15 C -0.09 -2.34 1.80 -10.78 -0.02 -2.36 16 16 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 17 C 0.16 5.87 5.56 86.38 0.48 6.35 16 18 N -0.75 -33.75 5.13 -343.46 -1.76 -35.51 16 19 C -0.24 -13.40 10.47 84.03 0.88 -12.52 16 20 H 0.05 3.10 8.06 -2.91 -0.02 3.08 16 21 C -0.06 -3.71 5.50 84.86 0.47 -3.24 16 22 N -0.99 -63.15 13.97 21.65 0.30 -62.84 16 23 Si 0.96 44.16 27.74 68.60 1.90 46.06 16 24 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 25 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 26 H -0.25 -10.03 6.52 99.48 0.65 -9.38 16 27 N -0.27 -6.80 3.75 -356.03 -1.33 -8.13 16 28 C 0.08 1.64 10.70 127.77 1.37 3.01 16 29 N -0.29 -7.55 11.87 -47.50 -0.56 -8.12 16 30 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 32 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.10 1.34 8.12 -2.38 -0.02 1.32 16 35 H 0.18 3.15 7.58 -2.91 -0.02 3.13 16 36 H 0.41 8.24 7.43 -92.71 -0.69 7.55 16 37 H 0.06 1.28 8.07 -2.39 -0.02 1.26 16 38 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.06 1.63 7.18 -2.39 -0.02 1.62 16 45 H 0.03 1.00 7.30 -2.39 -0.02 0.98 16 46 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 47 H 0.37 15.44 4.71 -92.71 -0.44 15.00 16 48 H 0.26 15.70 8.31 -92.70 -0.77 14.92 16 49 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 50 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 51 H 0.10 2.09 6.55 -2.39 -0.02 2.07 16 Total: -1.00 -74.03 403.25 2.63 -71.40 By element: Atomic # 1 Polarization: 35.68 SS G_CDS: -0.26 Total: 35.42 kcal Atomic # 6 Polarization: -9.16 SS G_CDS: 6.32 Total: -2.84 kcal Atomic # 7 Polarization: -127.36 SS G_CDS: -5.27 Total: -132.64 kcal Atomic # 8 Polarization: -17.34 SS G_CDS: -0.06 Total: -17.40 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 1.90 Total: 46.06 kcal Total: -74.03 2.63 -71.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669974066.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.838 kcal (2) G-P(sol) polarization free energy of solvation -74.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.36 seconds