Wall clock time and date at job start Tue Mar 31 2020 18:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50700 * 109.47460 * 2 1 4 4 C 1.39670 * 126.07081 * 124.99775 * 3 2 1 5 5 C 1.38403 * 105.36325 * 179.97438 * 4 3 2 6 6 C 1.47157 * 126.88694 * 180.02562 * 5 4 3 7 7 O 1.21624 * 120.00211 * 184.66247 * 6 5 4 8 8 N 1.34781 * 119.99909 * 4.66139 * 6 5 4 9 9 C 1.46502 * 120.00001 * 174.39380 * 8 6 5 10 10 H 1.09010 * 109.46920 * 35.00020 * 9 8 6 11 11 C 1.52994 * 109.47237 * 275.00431 * 9 8 6 12 12 C 1.53002 * 109.47316 * 299.99778 * 11 9 8 13 13 C 1.53005 * 109.46949 * 300.00360 * 12 11 9 14 14 C 1.53002 * 109.47278 * 59.99517 * 13 12 11 15 15 C 1.52995 * 109.47048 * 155.00082 * 9 8 6 16 16 H 1.09004 * 109.47252 * 180.02562 * 15 9 8 17 17 C 1.53002 * 109.47260 * 300.00079 * 15 9 8 18 18 N 1.46501 * 109.47195 * 185.00075 * 17 15 9 19 19 C 1.36933 * 120.00107 * 180.02562 * 18 17 15 20 20 H 1.08011 * 119.99745 * 0.02562 * 19 18 17 21 21 C 1.38807 * 120.00478 * 180.02562 * 19 18 17 22 22 N 1.31627 * 119.99809 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 120.00512 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47139 * 89.99878 * 23 21 19 25 25 H 1.48496 * 109.46988 * 209.99839 * 23 21 19 26 26 H 1.48503 * 109.46643 * 329.99654 * 23 21 19 27 27 N 1.36604 * 106.22863 * 0.25967 * 5 4 3 28 28 C 1.46501 * 125.18933 * 179.74066 * 27 5 4 29 29 N 1.28441 * 109.61730 * 359.55635 * 27 5 4 30 30 H 1.08996 * 109.47220 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47056 * 299.99701 * 1 2 3 32 32 H 1.09004 * 109.47135 * 59.99660 * 1 2 3 33 33 H 1.09000 * 109.47056 * 240.00299 * 2 1 3 34 34 H 1.09004 * 109.47135 * 120.00340 * 2 1 3 35 35 H 1.08009 * 127.31658 * 359.94930 * 4 3 2 36 36 H 0.97000 * 119.99916 * 354.39326 * 8 6 5 37 37 H 1.09002 * 109.47301 * 59.99638 * 11 9 8 38 38 H 1.09002 * 109.47414 * 179.97438 * 11 9 8 39 39 H 1.09002 * 109.46891 * 59.99664 * 12 11 9 40 40 H 1.08991 * 109.47432 * 179.97438 * 12 11 9 41 41 H 1.08991 * 109.46909 * 299.99911 * 13 12 11 42 42 H 1.08999 * 109.46925 * 179.97438 * 13 12 11 43 43 H 1.08992 * 109.47383 * 179.97438 * 14 13 12 44 44 H 1.09005 * 109.47063 * 59.99777 * 14 13 12 45 45 H 1.09002 * 109.46961 * 304.99988 * 17 15 9 46 46 H 1.08996 * 109.46985 * 64.99661 * 17 15 9 47 47 H 0.96998 * 119.99733 * 0.02562 * 18 17 15 48 48 H 0.96994 * 120.00317 * 179.97438 * 22 21 19 49 49 H 1.08998 * 109.47042 * 90.45802 * 28 27 5 50 50 H 1.08997 * 109.46786 * 210.46108 * 28 27 5 51 51 H 1.09005 * 109.46928 * 330.45638 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.9170 1.9802 0.9248 5 6 3.0844 3.2942 0.5236 6 6 3.9257 4.3145 1.1691 7 8 3.9156 5.4594 0.7589 8 7 4.7073 3.9802 2.2151 9 6 5.6354 4.9632 2.7796 10 1 5.1902 5.9568 2.7243 11 6 6.9427 4.9452 1.9851 12 6 7.5675 3.5508 2.0626 13 6 7.8541 3.2009 3.5243 14 6 6.5467 3.2189 4.3188 15 6 5.9219 4.6133 4.2412 16 1 6.6121 5.3449 4.6614 17 6 4.6145 4.6313 5.0357 18 7 4.9028 4.4142 6.4556 19 6 3.8802 4.3892 7.3659 20 1 2.8609 4.5291 7.0370 21 6 4.1534 4.1841 8.7112 22 7 5.3955 4.0131 9.1120 23 14 2.7582 4.1492 9.9530 24 1 2.2590 2.7582 10.0977 25 1 3.2518 4.6370 11.2659 26 1 1.6550 5.0248 9.4826 27 7 2.3081 3.4556 -0.5888 28 6 2.1731 4.6995 -1.3509 29 7 1.7177 2.3493 -0.8668 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.3731 1.4914 1.7731 36 1 4.6552 3.0889 2.5940 37 1 6.7385 5.1945 0.9438 38 1 7.6331 5.6769 2.4048 39 1 6.8770 2.8194 1.6426 40 1 8.4987 3.5378 1.4962 41 1 8.5445 3.9322 3.9443 42 1 8.2988 2.2073 3.5795 43 1 6.7507 2.9692 5.3599 44 1 5.8561 2.4875 3.8987 45 1 4.1249 5.5968 4.9079 46 1 3.9581 3.8403 4.6731 47 1 5.8182 4.2883 6.7508 48 1 5.5865 3.8701 10.0521 49 1 2.9265 4.7269 -2.1381 50 1 1.1796 4.7462 -1.7969 51 1 2.3126 5.5508 -0.6845 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001669974067.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:39 Heat of formation + Delta-G solvation = 27.654516 kcal Electronic energy + Delta-G solvation = -29778.749747 eV Core-core repulsion = 25907.046959 eV Total energy + Delta-G solvation = -3871.702788 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 2.60 seconds Orbital eigenvalues (eV) -42.68489 -40.20592 -38.11309 -35.01019 -34.66395 -33.81985 -32.06166 -31.85680 -31.14491 -29.77204 -29.24030 -27.06857 -25.29395 -23.74798 -23.58590 -22.97343 -22.19842 -21.29358 -20.63073 -19.54171 -18.95159 -17.94198 -17.08281 -16.47824 -16.34379 -15.50562 -15.34086 -14.91554 -14.61244 -14.58933 -14.32887 -14.08743 -13.93695 -13.87399 -13.59370 -13.29825 -13.09049 -13.04873 -12.82346 -12.61953 -12.27943 -12.13976 -12.00997 -11.71514 -11.65419 -11.45376 -11.43956 -10.91236 -10.89470 -10.74519 -10.68992 -10.38587 -10.22127 -10.07547 -10.00577 -9.89283 -9.64187 -9.29290 -9.01518 -8.94421 -8.85060 -6.92436 -5.77513 -3.05775 1.15701 2.24496 2.40978 3.14808 3.17561 3.43191 3.48843 3.50268 4.27010 4.43507 4.56655 4.72709 4.82234 4.85868 4.89391 4.94178 4.99127 5.13334 5.16525 5.21571 5.28696 5.29987 5.36529 5.50706 5.55001 5.57628 5.58718 5.61272 5.65319 5.71735 5.73207 5.79184 5.92917 6.01732 6.05376 6.09419 6.12972 6.21640 6.24179 6.34010 6.34681 6.45574 6.51078 6.61215 6.65990 6.78872 6.84963 7.41319 7.69992 7.92629 8.09028 8.41678 9.53107 10.10386 10.45305 11.45333 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.009338 B = 0.003351 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2997.911870 B = 8354.833599 C = 9961.179031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.036 4.036 3 C 0.026 3.974 4 C -0.184 4.184 5 C -0.034 4.034 6 C 0.592 3.408 7 O -0.546 6.546 8 N -0.697 5.697 9 C 0.156 3.844 10 H 0.092 0.908 11 C -0.128 4.128 12 C -0.117 4.117 13 C -0.121 4.121 14 C -0.111 4.111 15 C -0.102 4.102 16 H 0.088 0.912 17 C 0.160 3.840 18 N -0.730 5.730 19 C -0.238 4.238 20 H 0.069 0.931 21 C -0.013 4.013 22 N -0.934 5.934 23 Si 0.905 3.095 24 H -0.290 1.290 25 H -0.291 1.291 26 H -0.282 1.282 27 N -0.258 5.258 28 C 0.085 3.915 29 N -0.276 5.276 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.160 0.840 36 H 0.404 0.596 37 H 0.062 0.938 38 H 0.074 0.926 39 H 0.059 0.941 40 H 0.057 0.943 41 H 0.063 0.937 42 H 0.059 0.941 43 H 0.080 0.920 44 H 0.054 0.946 45 H 0.018 0.982 46 H 0.018 0.982 47 H 0.384 0.616 48 H 0.255 0.745 49 H 0.082 0.918 50 H 0.091 0.909 51 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.487 -4.806 -21.643 22.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.075 4.075 3 C -0.131 4.131 4 C -0.213 4.213 5 C -0.162 4.162 6 C 0.378 3.622 7 O -0.425 6.425 8 N -0.348 5.348 9 C 0.051 3.949 10 H 0.110 0.890 11 C -0.167 4.167 12 C -0.154 4.154 13 C -0.158 4.158 14 C -0.149 4.149 15 C -0.121 4.121 16 H 0.106 0.894 17 C 0.032 3.968 18 N -0.375 5.375 19 C -0.370 4.370 20 H 0.087 0.913 21 C -0.209 4.209 22 N -0.582 5.582 23 Si 0.737 3.263 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.208 1.208 27 N -0.045 5.045 28 C -0.055 4.055 29 N -0.110 5.110 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.094 0.906 34 H 0.101 0.899 35 H 0.178 0.822 36 H 0.241 0.759 37 H 0.081 0.919 38 H 0.093 0.907 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.099 0.901 44 H 0.073 0.927 45 H 0.036 0.964 46 H 0.036 0.964 47 H 0.218 0.782 48 H 0.065 0.935 49 H 0.100 0.900 50 H 0.110 0.890 51 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -1.281 -3.606 -22.893 23.210 hybrid contribution -0.019 -0.564 1.735 1.825 sum -1.299 -4.170 -21.158 21.604 Atomic orbital electron populations 1.21713 0.94605 1.01653 1.02478 1.19875 0.96206 0.88382 1.03060 1.21965 1.00136 0.96722 0.94230 1.22164 1.03676 0.92598 1.02892 1.21426 1.03427 0.96556 0.94804 1.16878 0.78937 0.86149 0.80281 1.90750 1.67104 1.19912 1.64709 1.45805 1.39680 1.17316 1.32028 1.21046 0.88530 0.92807 0.92496 0.89026 1.21913 0.96520 0.97854 1.00363 1.21502 1.00095 0.96824 0.97006 1.21586 0.98041 1.01345 0.94847 1.21540 0.95692 0.96068 1.01559 1.21635 0.99336 0.98400 0.92707 0.89420 1.20646 0.92911 0.97649 0.85614 1.42352 1.07366 1.87161 1.00603 1.19218 0.88578 1.41214 0.87947 0.91327 1.24712 0.96279 1.02865 0.97020 1.69652 1.17054 1.56329 1.15213 0.86212 0.81361 0.77628 0.81146 1.21724 1.21775 1.20801 1.45519 1.30210 1.09329 1.19459 1.22364 1.03976 0.82044 0.97152 1.73074 1.19847 0.92628 1.25467 0.92302 0.92587 0.92267 0.90576 0.89882 0.82214 0.75862 0.91892 0.90747 0.92253 0.92418 0.91842 0.92181 0.90129 0.92712 0.96434 0.96421 0.78198 0.93541 0.89991 0.89026 0.86826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.88 37.16 0.37 -0.87 16 2 C -0.04 -0.31 6.51 -27.89 -0.18 -0.50 16 3 C 0.03 0.30 6.49 -82.47 -0.54 -0.24 16 4 C -0.18 -2.15 10.43 -38.99 -0.41 -2.55 16 5 C -0.03 -0.44 6.96 -82.06 -0.57 -1.01 16 6 C 0.59 8.14 7.76 -12.64 -0.10 8.04 16 7 O -0.55 -8.56 14.29 5.26 0.08 -8.49 16 8 N -0.70 -8.70 3.60 -54.97 -0.20 -8.90 16 9 C 0.16 2.03 2.27 -67.93 -0.15 1.87 16 10 H 0.09 1.34 7.50 -51.92 -0.39 0.95 16 11 C -0.13 -1.44 5.60 -26.73 -0.15 -1.59 16 12 C -0.12 -1.21 5.77 -26.73 -0.15 -1.37 16 13 C -0.12 -1.36 5.92 -26.73 -0.16 -1.52 16 14 C -0.11 -1.52 4.90 -26.73 -0.13 -1.65 16 15 C -0.10 -1.50 2.02 -90.62 -0.18 -1.69 16 16 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 17 C 0.16 3.08 5.42 -4.04 -0.02 3.06 16 18 N -0.73 -17.86 5.33 -59.91 -0.32 -18.18 16 19 C -0.24 -6.60 9.99 -15.06 -0.15 -6.75 16 20 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 21 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 22 N -0.93 -27.78 13.06 55.49 0.72 -27.06 16 23 Si 0.91 22.33 29.55 -169.99 -5.02 17.31 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 25 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 26 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 27 N -0.26 -3.26 3.75 -63.88 -0.24 -3.50 16 28 C 0.08 0.82 10.89 59.85 0.65 1.47 16 29 N -0.28 -3.55 11.87 33.64 0.40 -3.15 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.08 0.60 8.12 -51.93 -0.42 0.18 16 35 H 0.16 1.51 7.58 -52.48 -0.40 1.11 16 36 H 0.40 4.66 5.70 -40.82 -0.23 4.42 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.06 0.62 7.60 -51.93 -0.39 0.22 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.08 1.33 7.18 -51.93 -0.37 0.96 16 44 H 0.05 0.70 6.51 -51.93 -0.34 0.37 16 45 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 46 H 0.02 0.35 7.61 -51.93 -0.40 -0.05 16 47 H 0.38 9.77 6.85 -40.82 -0.28 9.49 16 48 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 49 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 50 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 51 H 0.11 1.20 6.20 -51.93 -0.32 0.88 16 LS Contribution 401.93 15.07 6.06 6.06 Total: -1.00 -32.44 401.93 -9.08 -41.53 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: -8.59 Total: 10.13 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: -1.97 Total: -5.75 kcal Atomic # 7 Polarization: -61.15 SS G_CDS: 0.37 Total: -60.78 kcal Atomic # 8 Polarization: -8.56 SS G_CDS: 0.08 Total: -8.49 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -32.44 -9.08 -41.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669974067.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.180 kcal (2) G-P(sol) polarization free energy of solvation -32.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.60 seconds