Wall clock time and date at job start Tue Mar 31 2020 18:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50700 * 109.47460 * 2 1 4 4 C 1.39670 * 126.07081 * 124.99775 * 3 2 1 5 5 C 1.38403 * 105.36325 * 179.97438 * 4 3 2 6 6 C 1.47157 * 126.88694 * 180.02562 * 5 4 3 7 7 O 1.21624 * 120.00211 * 184.66247 * 6 5 4 8 8 N 1.34781 * 119.99909 * 4.66139 * 6 5 4 9 9 C 1.46502 * 120.00001 * 174.39380 * 8 6 5 10 10 H 1.09010 * 109.46920 * 35.00020 * 9 8 6 11 11 C 1.52994 * 109.47237 * 275.00431 * 9 8 6 12 12 C 1.53002 * 109.47316 * 299.99778 * 11 9 8 13 13 C 1.53005 * 109.46949 * 300.00360 * 12 11 9 14 14 C 1.53002 * 109.47278 * 59.99517 * 13 12 11 15 15 C 1.52995 * 109.47048 * 155.00082 * 9 8 6 16 16 H 1.09004 * 109.47252 * 180.02562 * 15 9 8 17 17 C 1.53002 * 109.47260 * 300.00079 * 15 9 8 18 18 N 1.46501 * 109.47195 * 185.00075 * 17 15 9 19 19 C 1.36933 * 120.00107 * 180.02562 * 18 17 15 20 20 H 1.08011 * 119.99745 * 0.02562 * 19 18 17 21 21 C 1.38807 * 120.00478 * 180.02562 * 19 18 17 22 22 N 1.31627 * 119.99809 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 120.00512 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47139 * 89.99878 * 23 21 19 25 25 H 1.48496 * 109.46988 * 209.99839 * 23 21 19 26 26 H 1.48503 * 109.46643 * 329.99654 * 23 21 19 27 27 N 1.36604 * 106.22863 * 0.25967 * 5 4 3 28 28 C 1.46501 * 125.18933 * 179.74066 * 27 5 4 29 29 N 1.28441 * 109.61730 * 359.55635 * 27 5 4 30 30 H 1.08996 * 109.47220 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47056 * 299.99701 * 1 2 3 32 32 H 1.09004 * 109.47135 * 59.99660 * 1 2 3 33 33 H 1.09000 * 109.47056 * 240.00299 * 2 1 3 34 34 H 1.09004 * 109.47135 * 120.00340 * 2 1 3 35 35 H 1.08009 * 127.31658 * 359.94930 * 4 3 2 36 36 H 0.97000 * 119.99916 * 354.39326 * 8 6 5 37 37 H 1.09002 * 109.47301 * 59.99638 * 11 9 8 38 38 H 1.09002 * 109.47414 * 179.97438 * 11 9 8 39 39 H 1.09002 * 109.46891 * 59.99664 * 12 11 9 40 40 H 1.08991 * 109.47432 * 179.97438 * 12 11 9 41 41 H 1.08991 * 109.46909 * 299.99911 * 13 12 11 42 42 H 1.08999 * 109.46925 * 179.97438 * 13 12 11 43 43 H 1.08992 * 109.47383 * 179.97438 * 14 13 12 44 44 H 1.09005 * 109.47063 * 59.99777 * 14 13 12 45 45 H 1.09002 * 109.46961 * 304.99988 * 17 15 9 46 46 H 1.08996 * 109.46985 * 64.99661 * 17 15 9 47 47 H 0.96998 * 119.99733 * 0.02562 * 18 17 15 48 48 H 0.96994 * 120.00317 * 179.97438 * 22 21 19 49 49 H 1.08998 * 109.47042 * 90.45802 * 28 27 5 50 50 H 1.08997 * 109.46786 * 210.46108 * 28 27 5 51 51 H 1.09005 * 109.46928 * 330.45638 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.9170 1.9802 0.9248 5 6 3.0844 3.2942 0.5236 6 6 3.9257 4.3145 1.1691 7 8 3.9156 5.4594 0.7589 8 7 4.7073 3.9802 2.2151 9 6 5.6354 4.9632 2.7796 10 1 5.1902 5.9568 2.7243 11 6 6.9427 4.9452 1.9851 12 6 7.5675 3.5508 2.0626 13 6 7.8541 3.2009 3.5243 14 6 6.5467 3.2189 4.3188 15 6 5.9219 4.6133 4.2412 16 1 6.6121 5.3449 4.6614 17 6 4.6145 4.6313 5.0357 18 7 4.9028 4.4142 6.4556 19 6 3.8802 4.3892 7.3659 20 1 2.8609 4.5291 7.0370 21 6 4.1534 4.1841 8.7112 22 7 5.3955 4.0131 9.1120 23 14 2.7582 4.1492 9.9530 24 1 2.2590 2.7582 10.0977 25 1 3.2518 4.6370 11.2659 26 1 1.6550 5.0248 9.4826 27 7 2.3081 3.4556 -0.5888 28 6 2.1731 4.6995 -1.3509 29 7 1.7177 2.3493 -0.8668 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.3731 1.4914 1.7731 36 1 4.6552 3.0889 2.5940 37 1 6.7385 5.1945 0.9438 38 1 7.6331 5.6769 2.4048 39 1 6.8770 2.8194 1.6426 40 1 8.4987 3.5378 1.4962 41 1 8.5445 3.9322 3.9443 42 1 8.2988 2.2073 3.5795 43 1 6.7507 2.9692 5.3599 44 1 5.8561 2.4875 3.8987 45 1 4.1249 5.5968 4.9079 46 1 3.9581 3.8403 4.6731 47 1 5.8182 4.2883 6.7508 48 1 5.5865 3.8701 10.0521 49 1 2.9265 4.7269 -2.1381 50 1 1.1796 4.7462 -1.7969 51 1 2.3126 5.5508 -0.6845 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001669974067.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:22 Heat of formation + Delta-G solvation = 8.344411 kcal Electronic energy + Delta-G solvation = -29779.587096 eV Core-core repulsion = 25907.046959 eV Total energy + Delta-G solvation = -3872.540137 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 9.38 seconds Orbital eigenvalues (eV) -43.59313 -41.30653 -39.25149 -36.46710 -35.77676 -34.84607 -33.71848 -32.77006 -32.07978 -31.23425 -30.42687 -27.86803 -26.96107 -24.76496 -24.68137 -24.31520 -23.25599 -22.26136 -21.93004 -20.53585 -20.02191 -19.23449 -18.71493 -17.39332 -17.34499 -16.78789 -16.50648 -16.23357 -16.03028 -15.56706 -15.30512 -15.09914 -15.05196 -14.89870 -14.86162 -14.67926 -14.58190 -14.08332 -13.79822 -13.45916 -13.40578 -13.12621 -13.00530 -12.96999 -12.86064 -12.70953 -12.59523 -12.35218 -12.17307 -12.11152 -11.92480 -11.84248 -11.51175 -11.40901 -11.21565 -11.14922 -11.02033 -10.84848 -10.30531 -9.96967 -9.85830 -8.97758 -7.94668 -5.22567 0.18101 1.36623 1.47581 1.48344 1.52376 1.56843 2.12104 2.18167 2.55938 3.38778 3.42961 3.48895 3.61921 3.79020 3.85302 3.95263 4.09934 4.24217 4.25947 4.27404 4.31083 4.42818 4.47032 4.49229 4.49262 4.53044 4.58297 4.60858 4.67138 4.73834 4.78190 4.85540 4.92274 5.02805 5.08940 5.11810 5.17499 5.24311 5.28180 5.32500 5.33989 5.37221 5.44633 5.48533 5.51692 5.53902 5.60293 5.76207 6.27858 6.37607 6.98470 7.07511 7.35183 8.10497 8.35254 9.28483 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.009338 B = 0.003351 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2997.911870 B = 8354.833599 C = 9961.179031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.036 4.036 3 C 0.018 3.982 4 C -0.183 4.183 5 C -0.053 4.053 6 C 0.593 3.407 7 O -0.570 6.570 8 N -0.690 5.690 9 C 0.163 3.837 10 H 0.075 0.925 11 C -0.122 4.122 12 C -0.110 4.110 13 C -0.114 4.114 14 C -0.106 4.106 15 C -0.088 4.088 16 H 0.082 0.918 17 C 0.161 3.839 18 N -0.739 5.739 19 C -0.246 4.246 20 H 0.069 0.931 21 C -0.069 4.069 22 N -0.965 5.965 23 Si 0.968 3.032 24 H -0.285 1.285 25 H -0.294 1.294 26 H -0.274 1.274 27 N -0.266 5.266 28 C 0.081 3.919 29 N -0.291 5.291 30 H 0.078 0.922 31 H 0.043 0.957 32 H 0.047 0.953 33 H 0.087 0.913 34 H 0.100 0.900 35 H 0.180 0.820 36 H 0.410 0.590 37 H 0.061 0.939 38 H 0.082 0.918 39 H 0.062 0.938 40 H 0.075 0.925 41 H 0.063 0.937 42 H 0.072 0.928 43 H 0.050 0.950 44 H 0.064 0.936 45 H 0.004 0.996 46 H 0.022 0.978 47 H 0.377 0.623 48 H 0.252 0.748 49 H 0.095 0.905 50 H 0.108 0.892 51 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.514 -6.067 -22.734 23.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.075 4.075 3 C -0.138 4.138 4 C -0.212 4.212 5 C -0.181 4.181 6 C 0.379 3.621 7 O -0.450 6.450 8 N -0.341 5.341 9 C 0.059 3.941 10 H 0.093 0.907 11 C -0.160 4.160 12 C -0.147 4.147 13 C -0.151 4.151 14 C -0.144 4.144 15 C -0.107 4.107 16 H 0.100 0.900 17 C 0.034 3.966 18 N -0.382 5.382 19 C -0.378 4.378 20 H 0.087 0.913 21 C -0.262 4.262 22 N -0.616 5.616 23 Si 0.797 3.203 24 H -0.212 1.212 25 H -0.221 1.221 26 H -0.200 1.200 27 N -0.054 5.054 28 C -0.058 4.058 29 N -0.125 5.125 30 H 0.096 0.904 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.106 0.894 34 H 0.118 0.882 35 H 0.197 0.803 36 H 0.248 0.752 37 H 0.080 0.920 38 H 0.101 0.899 39 H 0.081 0.919 40 H 0.094 0.906 41 H 0.081 0.919 42 H 0.091 0.909 43 H 0.069 0.931 44 H 0.083 0.917 45 H 0.022 0.978 46 H 0.040 0.960 47 H 0.210 0.790 48 H 0.060 0.940 49 H 0.113 0.887 50 H 0.127 0.873 51 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -1.322 -4.871 -24.017 24.541 hybrid contribution -0.056 -0.157 2.025 2.032 sum -1.379 -5.028 -21.992 22.601 Atomic orbital electron populations 1.21684 0.94539 1.02577 1.01339 1.20022 0.96194 0.86842 1.04455 1.22507 0.99801 0.97755 0.93723 1.22489 1.03341 0.92094 1.03257 1.21449 1.04173 0.96949 0.95578 1.16993 0.78843 0.85990 0.80240 1.90738 1.67914 1.20921 1.65471 1.45721 1.39356 1.17378 1.31694 1.20897 0.89662 0.92061 0.91505 0.90729 1.21862 0.95392 0.98981 0.99762 1.21461 1.00939 0.95952 0.96365 1.21529 0.96386 1.02211 0.94977 1.21465 0.97379 0.95181 1.00333 1.21461 0.96822 0.99315 0.93098 0.89996 1.20750 0.95401 0.96680 0.83756 1.42503 1.06427 1.87000 1.02283 1.19561 0.89303 1.40090 0.88823 0.91333 1.25466 0.98494 1.03429 0.98798 1.69794 1.18819 1.57762 1.15221 0.85221 0.78801 0.77711 0.78519 1.21190 1.22086 1.19962 1.45795 1.30072 1.09882 1.19602 1.22489 1.05492 0.80815 0.96998 1.73071 1.20250 0.93029 1.26153 0.90356 0.93754 0.93334 0.89431 0.88189 0.80261 0.75160 0.92038 0.89938 0.91912 0.90613 0.91850 0.90888 0.93143 0.91716 0.97849 0.95987 0.79026 0.93952 0.88700 0.87320 0.88002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 9.88 71.98 0.71 -1.47 16 2 C -0.04 -0.55 6.51 29.85 0.19 -0.36 16 3 C 0.02 0.39 6.49 43.05 0.28 0.67 16 4 C -0.18 -3.98 10.43 22.66 0.24 -3.75 16 5 C -0.05 -1.34 6.96 40.78 0.28 -1.05 16 6 C 0.59 15.99 7.76 86.58 0.67 16.66 16 7 O -0.57 -17.89 14.29 -4.11 -0.06 -17.95 16 8 N -0.69 -16.60 3.60 -446.06 -1.61 -18.20 16 9 C 0.16 4.15 2.27 44.99 0.10 4.25 16 10 H 0.07 2.19 7.50 -2.38 -0.02 2.17 16 11 C -0.12 -2.53 5.60 30.59 0.17 -2.35 16 12 C -0.11 -1.98 5.77 30.60 0.18 -1.80 16 13 C -0.11 -2.33 5.92 30.60 0.18 -2.14 16 14 C -0.11 -2.81 4.90 30.59 0.15 -2.66 16 15 C -0.09 -2.58 2.02 -10.80 -0.02 -2.60 16 16 H 0.08 2.53 8.14 -2.38 -0.02 2.51 16 17 C 0.16 6.26 5.42 86.38 0.47 6.73 16 18 N -0.74 -36.64 5.33 -343.45 -1.83 -38.47 16 19 C -0.25 -13.70 9.99 84.03 0.84 -12.86 16 20 H 0.07 3.74 7.83 -2.90 -0.02 3.72 16 21 C -0.07 -3.94 5.50 84.86 0.47 -3.48 16 22 N -0.97 -58.09 13.06 21.65 0.28 -57.81 16 23 Si 0.97 45.99 29.55 68.60 2.03 48.02 16 24 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 25 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 26 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 27 N -0.27 -6.54 3.75 -356.02 -1.33 -7.87 16 28 C 0.08 1.53 10.89 127.77 1.39 2.92 16 29 N -0.29 -7.19 11.87 -47.50 -0.56 -7.75 16 30 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 33 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.10 1.18 8.12 -2.38 -0.02 1.16 16 35 H 0.18 2.99 7.58 -2.91 -0.02 2.97 16 36 H 0.41 8.85 5.70 -92.71 -0.53 8.33 16 37 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.06 1.12 7.60 -2.39 -0.02 1.10 16 40 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.05 1.67 7.18 -2.39 -0.02 1.65 16 44 H 0.06 1.57 6.51 -2.38 -0.02 1.55 16 45 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 46 H 0.02 0.85 7.61 -2.39 -0.02 0.83 16 47 H 0.38 19.61 6.85 -92.71 -0.64 18.97 16 48 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 49 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 50 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 51 H 0.10 2.17 6.20 -2.38 -0.01 2.16 16 Total: -1.00 -69.51 401.93 2.98 -66.53 By element: Atomic # 1 Polarization: 37.02 SS G_CDS: -0.23 Total: 36.79 kcal Atomic # 6 Polarization: -9.58 SS G_CDS: 6.30 Total: -3.28 kcal Atomic # 7 Polarization: -125.05 SS G_CDS: -5.05 Total: -130.11 kcal Atomic # 8 Polarization: -17.89 SS G_CDS: -0.06 Total: -17.95 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Total: -69.51 2.98 -66.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669974067.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.874 kcal (2) G-P(sol) polarization free energy of solvation -69.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 9.38 seconds