Wall clock time and date at job start Tue Mar 31 2020 18:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50702 * 109.47144 * 2 1 4 4 C 1.34668 * 126.59510 * 275.05004 * 3 2 1 5 5 N 1.34120 * 108.01907 * 179.97438 * 4 3 2 6 6 C 1.30496 * 109.26394 * 0.02562 * 5 4 3 7 7 C 1.50699 * 125.65659 * 180.02562 * 6 5 4 8 8 C 1.50690 * 109.46860 * 304.99833 * 7 6 5 9 9 O 1.21287 * 120.00402 * 0.02562 * 8 7 6 10 10 N 1.34781 * 120.00130 * 179.97438 * 8 7 6 11 11 C 1.46500 * 120.00223 * 179.97438 * 10 8 7 12 12 C 1.53003 * 109.47026 * 179.97438 * 11 10 8 13 13 C 1.52997 * 109.49648 * 300.06634 * 12 11 10 14 14 C 1.53040 * 109.49920 * 180.02562 * 12 11 10 15 15 C 1.53040 * 109.53856 * 178.68179 * 14 12 11 16 16 C 1.53198 * 109.31039 * 61.36551 * 15 14 12 17 17 N 1.46921 * 108.77299 * 305.36393 * 16 15 14 18 18 C 1.36941 * 120.62989 * 233.60635 * 17 16 15 19 19 H 1.08006 * 119.99465 * 27.68737 * 18 17 16 20 20 C 1.38803 * 120.00266 * 207.69016 * 18 17 16 21 21 N 1.31620 * 120.00471 * 17.35666 * 20 18 17 22 22 Si 1.86803 * 120.00240 * 197.35792 * 20 18 17 23 23 H 1.48501 * 109.47150 * 59.99612 * 22 20 18 24 24 H 1.48498 * 109.47493 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47026 * 300.00184 * 22 20 18 26 26 C 1.46925 * 118.74202 * 53.61086 * 17 16 15 27 27 N 1.35048 * 108.69221 * 359.97438 * 6 5 4 28 28 H 0.97001 * 126.39148 * 180.26332 * 27 6 5 29 29 H 1.08998 * 109.47696 * 59.99572 * 1 2 3 30 30 H 1.09002 * 109.46944 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46783 * 299.99477 * 1 2 3 32 32 H 1.08999 * 109.46783 * 240.00523 * 2 1 3 33 33 H 1.08994 * 109.47239 * 120.00355 * 2 1 3 34 34 H 1.08006 * 125.98730 * 359.95864 * 4 3 2 35 35 H 1.09003 * 109.46877 * 65.00027 * 7 6 5 36 36 H 1.08994 * 109.46990 * 184.99727 * 7 6 5 37 37 H 0.97001 * 119.99243 * 359.97438 * 10 8 7 38 38 H 1.08995 * 109.47321 * 300.00223 * 11 10 8 39 39 H 1.08996 * 109.46746 * 60.00581 * 11 10 8 40 40 H 1.09001 * 109.47330 * 60.00136 * 13 12 11 41 41 H 1.09007 * 109.47087 * 179.97438 * 13 12 11 42 42 H 1.09004 * 109.47655 * 299.99685 * 13 12 11 43 43 H 1.09005 * 109.45540 * 298.70654 * 14 12 11 44 44 H 1.09004 * 109.45726 * 58.66499 * 14 12 11 45 45 H 1.09003 * 109.49396 * 181.31551 * 15 14 12 46 46 H 1.08997 * 109.49873 * 301.41676 * 15 14 12 47 47 H 1.09000 * 109.58716 * 65.15118 * 16 15 14 48 48 H 1.08991 * 109.58341 * 185.57371 * 16 15 14 49 49 H 0.96992 * 120.00464 * 180.02562 * 21 20 18 50 50 H 1.08999 * 109.58673 * 186.60159 * 26 17 16 51 51 H 1.08997 * 109.58568 * 66.17845 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2102 2.2095 -1.0770 5 7 2.6689 3.3957 -0.6514 6 6 2.7826 3.3722 0.6484 7 6 3.2650 4.5115 1.5089 8 6 4.6189 4.9658 1.0279 9 8 5.1406 4.4188 0.0794 10 7 5.2497 5.9809 1.6510 11 6 6.5661 6.4223 1.1837 12 6 7.0553 7.5800 2.0564 13 6 6.0645 8.7422 1.9652 14 6 8.4302 8.0420 1.5685 15 6 8.9058 9.2214 2.4200 16 6 9.0361 8.7727 3.8790 17 7 7.7573 8.1931 4.3115 18 6 7.1296 8.6509 5.4392 19 1 7.2814 9.6691 5.7660 20 6 6.2984 7.8065 6.1622 21 7 6.3690 6.5041 5.9859 22 14 5.0794 8.5185 7.3857 23 1 4.1410 9.4263 6.6782 24 1 4.3154 7.4156 8.0221 25 1 5.8125 9.2798 8.4288 26 6 7.1646 7.1128 3.5113 27 7 2.3953 2.1579 1.0948 28 1 2.3745 1.8642 2.0191 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 2.0175 1.9347 -2.1036 35 1 2.5594 5.3398 1.4439 36 1 3.3401 4.1785 2.5440 37 1 4.8319 6.4192 2.4088 38 1 7.2715 5.5940 1.2494 39 1 6.4914 6.7548 0.1484 40 1 5.0854 8.4133 2.3137 41 1 6.4131 9.5666 2.5875 42 1 5.9888 9.0749 0.9300 43 1 9.1414 7.2206 1.6560 44 1 8.3602 8.3520 0.5258 45 1 9.8745 9.5649 2.0571 46 1 8.1824 10.0339 2.3526 47 1 9.8236 8.0236 3.9620 48 1 9.2785 9.6314 4.5050 49 1 5.7879 5.9141 6.4908 50 1 6.1721 6.8763 3.8947 51 1 7.7994 6.2283 3.5643 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671892719.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:06 Heat of formation + Delta-G solvation = 23.578612 kcal Electronic energy + Delta-G solvation = -29490.037012 eV Core-core repulsion = 25618.157480 eV Total energy + Delta-G solvation = -3871.879532 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.15055 -39.53721 -38.21474 -34.75480 -34.33279 -33.20736 -32.49538 -31.70037 -30.87918 -29.87710 -27.38316 -26.44381 -25.44837 -25.09987 -23.52301 -22.25401 -21.27244 -20.92083 -20.42606 -19.81328 -18.00937 -17.43960 -16.94250 -16.56848 -15.62416 -15.41497 -15.00421 -14.85458 -14.61966 -14.32358 -14.05092 -13.91267 -13.66579 -13.59813 -13.38798 -13.16492 -12.89047 -12.80753 -12.58352 -12.42541 -12.21300 -12.02236 -11.84908 -11.51550 -11.48279 -11.32044 -10.98353 -10.86708 -10.65342 -10.44067 -10.18071 -10.12138 -9.97610 -9.84923 -9.82992 -9.67681 -9.46798 -9.38039 -8.62899 -8.51570 -8.24181 -6.70281 -5.84780 -3.26163 1.94151 2.88773 2.96205 3.16578 3.31912 3.37638 3.39848 3.69546 4.30533 4.43422 4.59509 4.68887 4.95628 4.99703 5.08710 5.18500 5.27791 5.28283 5.31347 5.39677 5.45871 5.50388 5.52569 5.54590 5.58629 5.74692 5.79850 5.85559 5.99048 6.06849 6.14071 6.18699 6.21890 6.28539 6.42513 6.44717 6.55736 6.63874 6.74803 6.78946 6.85189 6.90543 6.97513 7.04636 7.27913 7.30193 7.55368 7.73327 7.88016 8.14934 8.38468 8.57522 9.15630 9.79234 10.36890 11.23002 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.013367 B = 0.002836 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.258770 B = 9871.149027 C =11428.872292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.046 4.046 3 C -0.028 4.028 4 C -0.022 4.022 5 N -0.459 5.459 6 C 0.226 3.774 7 C -0.058 4.058 8 C 0.516 3.484 9 O -0.526 6.526 10 N -0.719 5.719 11 C 0.139 3.861 12 C -0.102 4.102 13 C -0.126 4.126 14 C -0.095 4.095 15 C -0.135 4.135 16 C 0.143 3.857 17 N -0.589 5.589 18 C -0.247 4.247 19 H 0.064 0.936 20 C 0.002 3.998 21 N -0.903 5.903 22 Si 0.898 3.102 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.283 1.283 26 C 0.185 3.815 27 N -0.562 5.562 28 H 0.416 0.584 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.052 0.948 32 H 0.086 0.914 33 H 0.068 0.932 34 H 0.166 0.834 35 H 0.118 0.882 36 H 0.108 0.892 37 H 0.405 0.595 38 H 0.061 0.939 39 H 0.059 0.941 40 H 0.045 0.955 41 H 0.071 0.929 42 H 0.036 0.964 43 H 0.055 0.945 44 H 0.048 0.952 45 H 0.049 0.951 46 H 0.062 0.938 47 H 0.016 0.984 48 H 0.052 0.948 49 H 0.253 0.747 50 H 0.089 0.911 51 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.608 -7.700 -9.326 14.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.085 4.085 3 C -0.143 4.143 4 C -0.171 4.171 5 N -0.177 5.177 6 C -0.038 4.038 7 C -0.100 4.100 8 C 0.300 3.700 9 O -0.402 6.402 10 N -0.371 5.371 11 C 0.015 3.985 12 C -0.104 4.104 13 C -0.183 4.183 14 C -0.134 4.134 15 C -0.174 4.174 16 C 0.017 3.983 17 N -0.311 5.311 18 C -0.376 4.376 19 H 0.082 0.918 20 C -0.196 4.196 21 N -0.548 5.548 22 Si 0.728 3.272 23 H -0.210 1.210 24 H -0.217 1.217 25 H -0.210 1.210 26 C 0.059 3.941 27 N -0.166 5.166 28 H 0.253 0.747 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.105 0.895 33 H 0.087 0.913 34 H 0.183 0.817 35 H 0.136 0.864 36 H 0.127 0.873 37 H 0.241 0.759 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.064 0.936 41 H 0.090 0.910 42 H 0.055 0.945 43 H 0.074 0.926 44 H 0.066 0.934 45 H 0.068 0.932 46 H 0.081 0.919 47 H 0.034 0.966 48 H 0.070 0.930 49 H 0.063 0.937 50 H 0.107 0.893 51 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -8.116 -7.532 -10.457 15.230 hybrid contribution -0.978 -0.374 2.074 2.323 sum -9.094 -7.906 -8.383 14.679 Atomic orbital electron populations 1.21777 0.94541 1.01772 1.02407 1.19962 0.95910 0.89238 1.03344 1.21190 1.09424 0.96349 0.87384 1.22083 1.05974 0.90571 0.98494 1.70236 1.16592 1.23058 1.07854 1.22262 1.03720 0.86792 0.91058 1.19961 0.96412 0.95335 0.98312 1.19979 0.86383 0.80289 0.83337 1.90740 1.66896 1.55410 1.27134 1.46000 1.20633 1.35489 1.35027 1.21335 0.83145 0.96749 0.97256 1.21530 0.95145 0.94321 0.99440 1.21721 0.98051 0.98786 0.99749 1.21349 0.95882 0.98249 0.97887 1.22049 0.99582 0.97844 0.97961 1.20930 0.88828 0.96285 0.92261 1.43990 1.19243 1.41546 1.26319 1.19139 1.22762 0.94408 1.01328 0.91797 1.24992 1.01775 0.94974 0.97894 1.70042 1.39760 1.01272 1.43700 0.86433 0.81566 0.77977 0.81201 1.21039 1.21716 1.20963 1.20798 0.99897 0.88904 0.84485 1.43100 1.51426 1.12433 1.09652 0.74655 0.92069 0.92154 0.92911 0.89523 0.91342 0.81683 0.86401 0.87342 0.75903 0.92058 0.92310 0.93645 0.91045 0.94481 0.92617 0.93365 0.93233 0.91939 0.96582 0.92969 0.93734 0.89336 0.96508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.89 37.16 0.37 -0.57 16 2 C -0.05 -0.34 6.49 -27.88 -0.18 -0.52 16 3 C -0.03 -0.31 6.49 -81.60 -0.53 -0.84 16 4 C -0.02 -0.30 11.79 -17.82 -0.21 -0.51 16 5 N -0.46 -7.51 10.58 -10.82 -0.11 -7.62 16 6 C 0.23 3.17 6.96 -155.41 -1.08 2.08 16 7 C -0.06 -0.72 6.33 -29.04 -0.18 -0.91 16 8 C 0.52 8.37 7.82 -10.99 -0.09 8.29 16 9 O -0.53 -10.62 15.55 5.55 0.09 -10.53 16 10 N -0.72 -11.32 5.00 -60.30 -0.30 -11.62 16 11 C 0.14 2.33 4.57 -4.04 -0.02 2.31 16 12 C -0.10 -1.78 0.53 -154.39 -0.08 -1.86 16 13 C -0.13 -2.11 7.81 37.16 0.29 -1.82 16 14 C -0.10 -1.56 4.71 -26.69 -0.13 -1.68 16 15 C -0.14 -2.25 5.74 -26.61 -0.15 -2.40 16 16 C 0.14 2.88 6.52 -3.71 -0.02 2.85 16 17 N -0.59 -13.71 2.43 -172.33 -0.42 -14.13 16 18 C -0.25 -6.33 9.58 -15.06 -0.14 -6.47 16 19 H 0.06 1.63 7.89 -52.48 -0.41 1.22 16 20 C 0.00 0.05 4.91 -17.43 -0.09 -0.04 16 21 N -0.90 -24.28 11.19 55.49 0.62 -23.65 16 22 Si 0.90 20.40 29.59 -169.99 -5.03 15.37 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 24 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 26 C 0.19 4.02 3.73 -3.71 -0.01 4.01 16 27 N -0.56 -6.25 6.15 -6.54 -0.04 -6.29 16 28 H 0.42 3.33 8.96 -40.82 -0.37 2.97 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.17 1.82 8.06 -52.48 -0.42 1.40 16 35 H 0.12 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.40 6.13 6.22 -40.82 -0.25 5.88 16 38 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 39 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.04 0.75 6.86 -51.93 -0.36 0.39 16 41 H 0.07 1.32 5.97 -51.93 -0.31 1.01 16 42 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 45 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 46 H 0.06 1.05 6.33 -51.93 -0.33 0.72 16 47 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 48 H 0.05 1.03 7.93 -51.93 -0.41 0.62 16 49 H 0.25 6.61 8.31 -40.82 -0.34 6.27 16 50 H 0.09 2.06 4.95 -51.93 -0.26 1.81 16 51 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 LS Contribution 399.30 15.07 6.02 6.02 Total: -1.00 -32.82 399.30 -10.04 -42.86 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: -8.60 Total: 7.69 kcal Atomic # 6 Polarization: 4.18 SS G_CDS: -2.26 Total: 1.92 kcal Atomic # 7 Polarization: -63.07 SS G_CDS: -0.25 Total: -63.32 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.09 Total: -10.53 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.03 Total: 15.37 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.82 -10.04 -42.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671892719.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.435 kcal (2) G-P(sol) polarization free energy of solvation -32.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds