Wall clock time and date at job start Tue Mar 31 2020 18:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50702 * 109.47144 * 2 1 4 4 C 1.34668 * 126.59510 * 275.05004 * 3 2 1 5 5 N 1.34120 * 108.01907 * 179.97438 * 4 3 2 6 6 C 1.30496 * 109.26394 * 0.02562 * 5 4 3 7 7 C 1.50699 * 125.65659 * 180.02562 * 6 5 4 8 8 C 1.50690 * 109.46860 * 304.99833 * 7 6 5 9 9 O 1.21287 * 120.00402 * 0.02562 * 8 7 6 10 10 N 1.34781 * 120.00130 * 179.97438 * 8 7 6 11 11 C 1.46500 * 120.00223 * 179.97438 * 10 8 7 12 12 C 1.53003 * 109.47026 * 179.97438 * 11 10 8 13 13 C 1.52997 * 109.49648 * 300.06634 * 12 11 10 14 14 C 1.53040 * 109.49920 * 180.02562 * 12 11 10 15 15 C 1.53040 * 109.53856 * 178.68179 * 14 12 11 16 16 C 1.53198 * 109.31039 * 61.36551 * 15 14 12 17 17 N 1.46921 * 108.77299 * 305.36393 * 16 15 14 18 18 C 1.36941 * 120.62989 * 233.60635 * 17 16 15 19 19 H 1.08006 * 119.99465 * 27.68737 * 18 17 16 20 20 C 1.38803 * 120.00266 * 207.69016 * 18 17 16 21 21 N 1.31620 * 120.00471 * 17.35666 * 20 18 17 22 22 Si 1.86803 * 120.00240 * 197.35792 * 20 18 17 23 23 H 1.48501 * 109.47150 * 59.99612 * 22 20 18 24 24 H 1.48498 * 109.47493 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47026 * 300.00184 * 22 20 18 26 26 C 1.46925 * 118.74202 * 53.61086 * 17 16 15 27 27 N 1.35048 * 108.69221 * 359.97438 * 6 5 4 28 28 H 0.97001 * 126.39148 * 180.26332 * 27 6 5 29 29 H 1.08998 * 109.47696 * 59.99572 * 1 2 3 30 30 H 1.09002 * 109.46944 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46783 * 299.99477 * 1 2 3 32 32 H 1.08999 * 109.46783 * 240.00523 * 2 1 3 33 33 H 1.08994 * 109.47239 * 120.00355 * 2 1 3 34 34 H 1.08006 * 125.98730 * 359.95864 * 4 3 2 35 35 H 1.09003 * 109.46877 * 65.00027 * 7 6 5 36 36 H 1.08994 * 109.46990 * 184.99727 * 7 6 5 37 37 H 0.97001 * 119.99243 * 359.97438 * 10 8 7 38 38 H 1.08995 * 109.47321 * 300.00223 * 11 10 8 39 39 H 1.08996 * 109.46746 * 60.00581 * 11 10 8 40 40 H 1.09001 * 109.47330 * 60.00136 * 13 12 11 41 41 H 1.09007 * 109.47087 * 179.97438 * 13 12 11 42 42 H 1.09004 * 109.47655 * 299.99685 * 13 12 11 43 43 H 1.09005 * 109.45540 * 298.70654 * 14 12 11 44 44 H 1.09004 * 109.45726 * 58.66499 * 14 12 11 45 45 H 1.09003 * 109.49396 * 181.31551 * 15 14 12 46 46 H 1.08997 * 109.49873 * 301.41676 * 15 14 12 47 47 H 1.09000 * 109.58716 * 65.15118 * 16 15 14 48 48 H 1.08991 * 109.58341 * 185.57371 * 16 15 14 49 49 H 0.96992 * 120.00464 * 180.02562 * 21 20 18 50 50 H 1.08999 * 109.58673 * 186.60159 * 26 17 16 51 51 H 1.08997 * 109.58568 * 66.17845 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2102 2.2095 -1.0770 5 7 2.6689 3.3957 -0.6514 6 6 2.7826 3.3722 0.6484 7 6 3.2650 4.5115 1.5089 8 6 4.6189 4.9658 1.0279 9 8 5.1406 4.4188 0.0794 10 7 5.2497 5.9809 1.6510 11 6 6.5661 6.4223 1.1837 12 6 7.0553 7.5800 2.0564 13 6 6.0645 8.7422 1.9652 14 6 8.4302 8.0420 1.5685 15 6 8.9058 9.2214 2.4200 16 6 9.0361 8.7727 3.8790 17 7 7.7573 8.1931 4.3115 18 6 7.1296 8.6509 5.4392 19 1 7.2814 9.6691 5.7660 20 6 6.2984 7.8065 6.1622 21 7 6.3690 6.5041 5.9859 22 14 5.0794 8.5185 7.3857 23 1 4.1410 9.4263 6.6782 24 1 4.3154 7.4156 8.0221 25 1 5.8125 9.2798 8.4288 26 6 7.1646 7.1128 3.5113 27 7 2.3953 2.1579 1.0948 28 1 2.3745 1.8642 2.0191 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 2.0175 1.9347 -2.1036 35 1 2.5594 5.3398 1.4439 36 1 3.3401 4.1785 2.5440 37 1 4.8319 6.4192 2.4088 38 1 7.2715 5.5940 1.2494 39 1 6.4914 6.7548 0.1484 40 1 5.0854 8.4133 2.3137 41 1 6.4131 9.5666 2.5875 42 1 5.9888 9.0749 0.9300 43 1 9.1414 7.2206 1.6560 44 1 8.3602 8.3520 0.5258 45 1 9.8745 9.5649 2.0571 46 1 8.1824 10.0339 2.3526 47 1 9.8236 8.0236 3.9620 48 1 9.2785 9.6314 4.5050 49 1 5.7879 5.9141 6.4908 50 1 6.1721 6.8763 3.8947 51 1 7.7994 6.2283 3.5643 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671892719.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:04 Heat of formation + Delta-G solvation = 3.437087 kcal Electronic energy + Delta-G solvation = -29490.910414 eV Core-core repulsion = 25618.157480 eV Total energy + Delta-G solvation = -3872.752934 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 4.25 seconds Orbital eigenvalues (eV) -43.09705 -40.91529 -39.68160 -36.27704 -35.08180 -34.85599 -33.52303 -33.04140 -32.06948 -31.50843 -28.37930 -27.86450 -27.20156 -26.48755 -24.25785 -23.87945 -22.53834 -21.93397 -21.72838 -20.97541 -19.54617 -18.49599 -18.38214 -18.04603 -17.00633 -16.66728 -16.45733 -15.99640 -15.72067 -15.45524 -15.37772 -15.24243 -14.96808 -14.83641 -14.56204 -14.46058 -14.31886 -13.93880 -13.83186 -13.73531 -13.28531 -13.18029 -12.99552 -12.93496 -12.66664 -12.53132 -12.44291 -12.24875 -12.14368 -12.02475 -11.82565 -11.69840 -11.38855 -11.21281 -10.96952 -10.94729 -10.88378 -10.78036 -10.46636 -9.97939 -9.17226 -8.58824 -7.79954 -5.24346 1.01644 1.51691 1.53271 1.59588 1.70382 1.93022 2.19027 2.54088 2.56545 3.32014 3.34836 3.64544 3.89274 3.97003 3.99400 4.05509 4.07543 4.08200 4.16130 4.36026 4.39456 4.45161 4.53375 4.56626 4.59116 4.70565 4.76504 4.77400 4.79816 4.83467 4.96196 5.01725 5.06320 5.07076 5.14440 5.19551 5.32582 5.35377 5.36699 5.41159 5.43344 5.50741 5.57760 5.66637 5.75970 5.81534 5.82184 6.45826 6.46225 6.61723 7.18320 7.22240 7.30281 7.92644 8.45870 9.25357 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.013367 B = 0.002836 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.258770 B = 9871.149027 C =11428.872292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.044 4.044 3 C -0.010 4.010 4 C -0.058 4.058 5 N -0.504 5.504 6 C 0.205 3.795 7 C -0.052 4.052 8 C 0.515 3.485 9 O -0.569 6.569 10 N -0.715 5.715 11 C 0.146 3.854 12 C -0.090 4.090 13 C -0.119 4.119 14 C -0.096 4.096 15 C -0.123 4.123 16 C 0.136 3.864 17 N -0.604 5.604 18 C -0.256 4.256 19 H 0.062 0.938 20 C -0.042 4.042 21 N -0.929 5.929 22 Si 0.958 3.042 23 H -0.276 1.276 24 H -0.294 1.294 25 H -0.286 1.286 26 C 0.197 3.803 27 N -0.553 5.553 28 H 0.431 0.569 29 H 0.054 0.946 30 H 0.078 0.922 31 H 0.047 0.953 32 H 0.098 0.902 33 H 0.083 0.917 34 H 0.177 0.823 35 H 0.140 0.860 36 H 0.135 0.865 37 H 0.409 0.591 38 H 0.044 0.956 39 H 0.066 0.934 40 H 0.044 0.956 41 H 0.055 0.945 42 H 0.059 0.941 43 H 0.049 0.951 44 H 0.075 0.925 45 H 0.078 0.922 46 H 0.065 0.935 47 H 0.006 0.994 48 H 0.051 0.949 49 H 0.250 0.750 50 H 0.071 0.929 51 H -0.020 1.020 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.728 -7.556 -9.582 15.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.082 4.082 3 C -0.127 4.127 4 C -0.206 4.206 5 N -0.224 5.224 6 C -0.059 4.059 7 C -0.093 4.093 8 C 0.300 3.700 9 O -0.448 6.448 10 N -0.367 5.367 11 C 0.021 3.979 12 C -0.092 4.092 13 C -0.176 4.176 14 C -0.134 4.134 15 C -0.162 4.162 16 C 0.011 3.989 17 N -0.327 5.327 18 C -0.387 4.387 19 H 0.079 0.921 20 C -0.238 4.238 21 N -0.575 5.575 22 Si 0.787 3.213 23 H -0.202 1.202 24 H -0.220 1.220 25 H -0.212 1.212 26 C 0.071 3.929 27 N -0.158 5.158 28 H 0.271 0.729 29 H 0.073 0.927 30 H 0.097 0.903 31 H 0.067 0.933 32 H 0.116 0.884 33 H 0.101 0.899 34 H 0.194 0.806 35 H 0.157 0.843 36 H 0.153 0.847 37 H 0.246 0.754 38 H 0.063 0.937 39 H 0.085 0.915 40 H 0.063 0.937 41 H 0.074 0.926 42 H 0.078 0.922 43 H 0.068 0.932 44 H 0.094 0.906 45 H 0.096 0.904 46 H 0.083 0.917 47 H 0.024 0.976 48 H 0.069 0.931 49 H 0.059 0.941 50 H 0.089 0.911 51 H -0.001 1.001 Dipole moment (debyes) X Y Z Total from point charges -9.233 -7.366 -10.696 15.935 hybrid contribution -0.558 -0.458 2.167 2.285 sum -9.791 -7.825 -8.529 15.160 Atomic orbital electron populations 1.21741 0.93565 1.02854 1.01915 1.20119 0.96584 0.86900 1.04635 1.21730 1.07054 0.97358 0.86561 1.22446 1.07550 0.90636 0.99954 1.70141 1.17918 1.24904 1.09402 1.22417 1.04612 0.88020 0.90871 1.20010 0.94238 0.95830 0.99208 1.20611 0.87384 0.79476 0.82490 1.90717 1.68277 1.56726 1.29098 1.45993 1.20240 1.35494 1.34976 1.21196 0.83380 0.95852 0.97429 1.21330 0.96539 0.94808 0.96476 1.21642 0.97521 0.97623 1.00836 1.21383 0.94728 0.97995 0.99313 1.21924 1.01288 0.97797 0.95206 1.21089 0.87265 0.95769 0.94783 1.44227 1.20446 1.41765 1.26221 1.19388 1.22895 0.94379 1.02009 0.92066 1.25616 1.03277 0.95223 0.99671 1.70182 1.40451 1.02197 1.44720 0.85490 0.79541 0.77116 0.79123 1.20202 1.21992 1.21194 1.20577 0.97848 0.87511 0.86982 1.43087 1.50558 1.11629 1.10556 0.72909 0.92655 0.90281 0.93337 0.88376 0.89890 0.80596 0.84268 0.84664 0.75430 0.93730 0.91536 0.93693 0.92572 0.92168 0.93221 0.90626 0.90377 0.91670 0.97613 0.93060 0.94111 0.91107 1.00147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.89 71.98 0.71 -0.81 16 2 C -0.04 -0.55 6.49 29.85 0.19 -0.36 16 3 C -0.01 -0.22 6.49 40.95 0.27 0.05 16 4 C -0.06 -1.56 11.79 83.52 0.98 -0.57 16 5 N -0.50 -16.67 10.58 -188.13 -1.99 -18.66 16 6 C 0.21 5.66 6.96 138.13 0.96 6.62 16 7 C -0.05 -1.23 6.33 29.10 0.18 -1.05 16 8 C 0.51 16.64 7.82 87.65 0.69 17.33 16 9 O -0.57 -23.36 15.55 -3.05 -0.05 -23.41 16 10 N -0.71 -22.36 5.00 -463.06 -2.31 -24.67 16 11 C 0.15 4.84 4.57 86.38 0.39 5.23 16 12 C -0.09 -3.05 0.53 -52.11 -0.03 -3.08 16 13 C -0.12 -3.80 7.81 71.98 0.56 -3.24 16 14 C -0.10 -2.97 4.71 30.62 0.14 -2.83 16 15 C -0.12 -3.86 5.74 30.67 0.18 -3.68 16 16 C 0.14 5.44 6.52 86.37 0.56 6.01 16 17 N -0.60 -28.35 2.43 -699.12 -1.70 -30.05 16 18 C -0.26 -13.22 9.58 84.03 0.81 -12.41 16 19 H 0.06 3.13 7.89 -2.91 -0.02 3.11 16 20 C -0.04 -2.19 4.91 84.86 0.42 -1.77 16 21 N -0.93 -50.70 11.19 21.65 0.24 -50.46 16 22 Si 0.96 41.90 29.59 68.60 2.03 43.93 16 23 H -0.28 -11.62 7.11 99.48 0.71 -10.92 16 24 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 25 H -0.29 -12.49 7.11 99.48 0.71 -11.78 16 26 C 0.20 8.68 3.73 86.36 0.32 9.00 16 27 N -0.55 -11.67 6.15 -174.60 -1.07 -12.74 16 28 H 0.43 6.15 8.96 -92.71 -0.83 5.32 16 29 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.18 3.95 8.06 -2.91 -0.02 3.93 16 35 H 0.14 2.68 8.14 -2.39 -0.02 2.66 16 36 H 0.14 2.43 8.14 -2.39 -0.02 2.41 16 37 H 0.41 12.23 6.22 -92.71 -0.58 11.65 16 38 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 40 H 0.04 1.42 6.86 -2.39 -0.02 1.40 16 41 H 0.06 1.98 5.97 -2.38 -0.01 1.97 16 42 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 43 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 44 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 45 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 46 H 0.06 2.04 6.33 -2.39 -0.02 2.02 16 47 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 48 H 0.05 2.01 7.93 -2.39 -0.02 1.99 16 49 H 0.25 13.22 8.31 -92.71 -0.77 12.45 16 50 H 0.07 3.36 4.95 -2.39 -0.01 3.35 16 51 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 Total: -1.00 -72.53 399.30 2.02 -70.52 By element: Atomic # 1 Polarization: 31.57 SS G_CDS: -0.47 Total: 31.10 kcal Atomic # 6 Polarization: 7.10 SS G_CDS: 7.34 Total: 14.44 kcal Atomic # 7 Polarization: -129.74 SS G_CDS: -6.84 Total: -136.58 kcal Atomic # 8 Polarization: -23.36 SS G_CDS: -0.05 Total: -23.41 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.93 kcal Total: -72.53 2.02 -70.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671892719.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.953 kcal (2) G-P(sol) polarization free energy of solvation -72.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.25 seconds