Wall clock time and date at job start Tue Mar 31 2020 19:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47010 * 2 1 4 4 C 1.50700 * 109.47436 * 240.00266 * 2 1 3 5 5 C 1.39673 * 126.06864 * 84.99680 * 4 2 1 6 6 C 1.38413 * 105.35735 * 179.97438 * 5 4 2 7 7 C 1.47166 * 126.88004 * 179.97438 * 6 5 4 8 8 O 1.21627 * 119.99634 * 174.28296 * 7 6 5 9 9 N 1.34771 * 119.99978 * 354.27791 * 7 6 5 10 10 C 1.46505 * 119.99780 * 185.13948 * 9 7 6 11 11 H 1.08996 * 110.01911 * 34.30015 * 10 9 7 12 12 C 1.54267 * 110.03205 * 272.90953 * 10 9 7 13 13 C 1.54963 * 104.15929 * 217.13483 * 12 10 9 14 14 C 1.54885 * 102.77998 * 37.89062 * 13 12 10 15 15 H 1.09002 * 110.48484 * 80.75417 * 14 13 12 16 16 C 1.52996 * 110.49112 * 203.40379 * 14 13 12 17 17 N 1.46503 * 109.46932 * 289.77615 * 16 14 13 18 18 C 1.36940 * 119.99777 * 179.97438 * 17 16 14 19 19 H 1.08001 * 119.99801 * 0.02562 * 18 17 16 20 20 C 1.38809 * 119.99581 * 179.97438 * 18 17 16 21 21 N 1.31614 * 120.00597 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99514 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47459 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46937 * 120.00045 * 22 20 18 25 25 H 1.48505 * 109.47318 * 239.99898 * 22 20 18 26 26 C 1.53874 * 110.03043 * 155.69351 * 10 9 7 27 27 N 1.36591 * 106.23180 * 0.02562 * 6 5 4 28 28 C 1.46504 * 125.19141 * 180.02562 * 27 6 5 29 29 N 1.28445 * 109.62096 * 359.76421 * 27 6 5 30 30 H 1.09004 * 109.47056 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47491 * 299.99663 * 1 2 3 32 32 H 1.08993 * 109.47630 * 60.00318 * 1 2 3 33 33 H 1.09003 * 109.47602 * 119.99911 * 2 1 3 34 34 H 1.09004 * 109.47062 * 60.00225 * 3 2 1 35 35 H 1.09003 * 109.47505 * 179.97438 * 3 2 1 36 36 H 1.08999 * 109.47347 * 300.00254 * 3 2 1 37 37 H 1.08000 * 127.31943 * 359.97438 * 5 4 2 38 38 H 0.96996 * 120.00374 * 5.14502 * 9 7 6 39 39 H 1.09000 * 110.48851 * 335.78816 * 12 10 9 40 40 H 1.09005 * 110.48653 * 98.42932 * 12 10 9 41 41 H 1.09004 * 110.72042 * 279.57214 * 13 12 10 42 42 H 1.09008 * 110.91887 * 156.29841 * 13 12 10 43 43 H 1.09001 * 109.46659 * 49.77129 * 16 14 13 44 44 H 1.08997 * 109.47076 * 169.77519 * 16 14 13 45 45 H 0.96995 * 120.00105 * 359.97438 * 17 16 14 46 46 H 0.97002 * 120.00450 * 179.97438 * 21 20 18 47 47 H 1.09004 * 110.03244 * 238.56732 * 26 10 9 48 48 H 1.08993 * 110.03228 * 359.95387 * 26 10 9 49 49 H 1.09001 * 109.47313 * 93.85963 * 28 27 6 50 50 H 1.08995 * 109.47151 * 213.86035 * 28 27 6 51 51 H 1.09002 * 109.46578 * 333.86218 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2305 5 6 2.2137 -0.1403 -2.4926 6 6 2.6861 -1.1656 -3.2935 7 6 3.0352 -1.0823 -4.7207 8 8 3.5387 -2.0377 -5.2803 9 7 2.7969 0.0525 -5.4076 10 6 3.0391 0.0991 -6.8517 11 1 2.8121 -0.8683 -7.2996 12 6 4.5086 0.4780 -7.1290 13 6 4.4363 1.3823 -8.3854 14 6 3.1451 2.2027 -8.1431 15 1 3.3421 3.0323 -7.4641 16 6 2.5805 2.7166 -9.4690 17 7 3.4616 3.7575 -10.0042 18 6 3.1572 4.3683 -11.1915 19 1 2.2675 4.0829 -11.7330 20 6 3.9918 5.3549 -11.6983 21 7 5.0758 5.7031 -11.0381 22 14 3.5762 6.1885 -13.3175 23 1 2.3141 5.6215 -13.8566 24 1 3.4075 7.6470 -13.0944 25 1 4.6765 5.9603 -14.2885 26 6 2.1724 1.1950 -7.4964 27 7 2.7623 -2.2705 -2.4939 28 6 3.2160 -3.5951 -2.9251 29 7 2.3805 -1.9696 -1.3050 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5137 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 1.6766 1.9563 0.8900 35 1 3.1299 1.4426 0.0005 36 1 1.6766 1.9564 -0.8899 37 1 2.0253 0.8830 -2.7821 38 1 2.4651 0.8383 -4.9458 39 1 4.9263 1.0287 -6.2862 40 1 5.1005 -0.4142 -7.3338 41 1 4.3474 0.7799 -9.2895 42 1 5.3053 2.0378 -8.4436 43 1 2.5171 1.8932 -10.1803 44 1 1.5862 3.1317 -9.3039 45 1 4.2605 4.0141 -9.5176 46 1 5.6592 6.3923 -11.3924 47 1 1.5252 0.7595 -8.2578 48 1 1.5710 1.6915 -6.7349 49 1 4.2808 -3.6999 -2.7170 50 1 2.6628 -4.3626 -2.3839 51 1 3.0420 -3.7081 -3.9952 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676965114.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:44:07 Heat of formation + Delta-G solvation = 29.097359 kcal Electronic energy + Delta-G solvation = -28445.799843 eV Core-core repulsion = 24574.159621 eV Total energy + Delta-G solvation = -3871.640221 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.87376 -39.95928 -38.02311 -36.28998 -34.93235 -33.64054 -32.57884 -31.52158 -30.76083 -28.81565 -27.79170 -27.45316 -27.04197 -24.58488 -23.67108 -22.74933 -22.18765 -20.87156 -20.40515 -19.79845 -19.38753 -18.02951 -17.03927 -16.68818 -16.58920 -16.08482 -15.25199 -14.94894 -14.92197 -14.55303 -14.36996 -14.29241 -13.94237 -13.90259 -13.57878 -13.44125 -13.05249 -12.89844 -12.81629 -12.79230 -12.43117 -12.22853 -11.89046 -11.76027 -11.53491 -11.47858 -11.34992 -11.10874 -10.87175 -10.82290 -10.74345 -10.58671 -10.32000 -10.26455 -10.20527 -9.93912 -9.67755 -9.49225 -9.18908 -9.13397 -8.86302 -6.90132 -5.75864 -3.03974 0.98238 2.07563 2.24931 2.94782 2.97366 3.43507 3.49192 3.51390 4.02159 4.25352 4.51416 4.57374 4.67975 4.69187 4.75630 4.82146 4.87760 4.97888 5.00312 5.04456 5.18982 5.23137 5.31667 5.33375 5.49292 5.51176 5.52303 5.58100 5.59457 5.61168 5.63502 5.69813 5.85455 5.86128 5.91811 5.96568 6.06303 6.10985 6.17829 6.24645 6.29149 6.42997 6.44970 6.54486 6.58781 6.80033 6.93162 7.19881 7.71233 7.76407 7.89386 8.43425 9.54618 10.13524 10.48024 11.47183 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.018257 B = 0.001985 C = 0.001857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.321871 B =14101.254934 C =15073.175568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.010 4.010 3 C -0.145 4.145 4 C 0.033 3.967 5 C -0.183 4.183 6 C -0.035 4.035 7 C 0.590 3.410 8 O -0.541 6.541 9 N -0.704 5.704 10 C 0.144 3.856 11 H 0.091 0.909 12 C -0.133 4.133 13 C -0.111 4.111 14 C -0.097 4.097 15 H 0.076 0.924 16 C 0.160 3.840 17 N -0.732 5.732 18 C -0.237 4.237 19 H 0.070 0.930 20 C -0.016 4.016 21 N -0.934 5.934 22 Si 0.906 3.094 23 H -0.281 1.281 24 H -0.292 1.292 25 H -0.292 1.292 26 C -0.123 4.123 27 N -0.258 5.258 28 C 0.085 3.915 29 N -0.278 5.278 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.083 0.917 34 H 0.062 0.938 35 H 0.057 0.943 36 H 0.061 0.939 37 H 0.160 0.840 38 H 0.403 0.597 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.020 0.980 44 H 0.017 0.983 45 H 0.384 0.616 46 H 0.254 0.746 47 H 0.078 0.922 48 H 0.069 0.931 49 H 0.084 0.916 50 H 0.091 0.909 51 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.138 -15.399 23.206 28.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.030 4.030 3 C -0.202 4.202 4 C -0.123 4.123 5 C -0.212 4.212 6 C -0.164 4.164 7 C 0.376 3.624 8 O -0.419 6.419 9 N -0.356 5.356 10 C 0.040 3.960 11 H 0.109 0.891 12 C -0.172 4.172 13 C -0.149 4.149 14 C -0.116 4.116 15 H 0.094 0.906 16 C 0.032 3.968 17 N -0.376 5.376 18 C -0.369 4.369 19 H 0.088 0.912 20 C -0.211 4.211 21 N -0.583 5.583 22 Si 0.737 3.263 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.161 4.161 27 N -0.044 5.044 28 C -0.055 4.055 29 N -0.111 5.111 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.101 0.899 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.177 0.823 38 H 0.238 0.762 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.092 0.908 43 H 0.038 0.962 44 H 0.035 0.965 45 H 0.217 0.783 46 H 0.064 0.936 47 H 0.097 0.903 48 H 0.088 0.912 49 H 0.103 0.897 50 H 0.110 0.890 51 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -6.740 -17.205 23.180 29.644 hybrid contribution -0.042 1.627 -1.006 1.914 sum -6.783 -15.578 22.174 27.935 Atomic orbital electron populations 1.21815 0.93871 1.02116 1.02190 1.19431 0.95674 0.95026 0.92870 1.21840 1.01419 0.94585 1.02397 1.21934 1.03938 0.90117 0.96346 1.22064 1.06522 0.99548 0.93044 1.21433 1.11537 0.89283 0.94149 1.16926 0.78222 0.83480 0.83812 1.90782 1.43720 1.37136 1.70254 1.45969 1.66741 1.13349 1.09494 1.21808 0.95825 1.00381 0.77993 0.89080 1.22807 0.95314 1.00034 0.99021 1.22488 0.98301 0.97477 0.96646 1.22154 0.94599 0.96827 0.97980 0.90587 1.20695 0.93429 0.91468 0.91177 1.42357 1.27646 1.42821 1.24779 1.19282 1.06054 1.14062 0.97454 0.91194 1.24737 0.97431 0.99904 0.99075 1.69664 1.14869 1.34243 1.39491 0.86127 0.77390 0.79212 0.83530 1.20587 1.21909 1.21901 1.22445 0.97904 0.95785 0.99987 1.45534 1.44473 1.09605 1.04816 1.22367 1.01252 0.78570 1.03320 1.73125 1.17180 1.17951 1.02816 0.92604 0.91946 0.92266 0.89877 0.91861 0.92343 0.92038 0.82287 0.76156 0.91404 0.91347 0.91152 0.90811 0.96246 0.96527 0.78272 0.93603 0.90319 0.91229 0.89726 0.89045 0.86969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.89 9.18 37.15 0.34 -0.55 16 2 C -0.01 -0.07 3.38 -91.77 -0.31 -0.38 16 3 C -0.14 -0.85 8.79 37.16 0.33 -0.52 16 4 C 0.03 0.32 6.13 -82.47 -0.51 -0.18 16 5 C -0.18 -1.69 9.65 -38.98 -0.38 -2.07 16 6 C -0.04 -0.39 6.96 -82.06 -0.57 -0.96 16 7 C 0.59 6.92 7.77 -12.64 -0.10 6.82 16 8 O -0.54 -7.65 14.40 5.25 0.08 -7.58 16 9 N -0.70 -7.06 5.03 -53.88 -0.27 -7.33 16 10 C 0.14 1.63 3.19 -66.81 -0.21 1.42 16 11 H 0.09 1.12 7.66 -51.93 -0.40 0.72 16 12 C -0.13 -1.67 6.54 -25.03 -0.16 -1.83 16 13 C -0.11 -1.64 6.19 -24.70 -0.15 -1.80 16 14 C -0.10 -1.44 2.89 -88.96 -0.26 -1.70 16 15 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 16 C 0.16 3.10 5.54 -4.04 -0.02 3.08 16 17 N -0.73 -18.26 5.49 -59.91 -0.33 -18.59 16 18 C -0.24 -6.62 9.99 -15.06 -0.15 -6.77 16 19 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 20 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 21 N -0.93 -28.19 13.06 55.49 0.72 -27.46 16 22 Si 0.91 22.41 29.55 -169.99 -5.02 17.38 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 25 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 26 C -0.12 -1.41 6.14 -25.61 -0.16 -1.57 16 27 N -0.26 -2.82 3.75 -63.88 -0.24 -3.06 16 28 C 0.08 0.70 10.88 59.85 0.65 1.35 16 29 N -0.28 -3.15 11.90 33.64 0.40 -2.75 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 35 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.06 0.34 7.37 -51.93 -0.38 -0.05 16 37 H 0.16 1.06 7.05 -52.49 -0.37 0.69 16 38 H 0.40 3.15 7.34 -40.82 -0.30 2.85 16 39 H 0.07 0.84 8.05 -51.93 -0.42 0.42 16 40 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.07 1.09 7.97 -51.93 -0.41 0.67 16 42 H 0.07 1.20 8.14 -51.92 -0.42 0.78 16 43 H 0.02 0.39 8.02 -51.93 -0.42 -0.03 16 44 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.38 10.04 7.64 -40.82 -0.31 9.73 16 46 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 47 H 0.08 0.90 7.84 -51.93 -0.41 0.49 16 48 H 0.07 0.69 7.61 -51.93 -0.40 0.29 16 49 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 50 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 51 H 0.11 1.00 6.22 -51.93 -0.32 0.68 16 LS Contribution 409.83 15.07 6.18 6.18 Total: -1.00 -33.37 409.83 -9.00 -42.37 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: -8.75 Total: 7.05 kcal Atomic # 6 Polarization: -4.46 SS G_CDS: -1.75 Total: -6.21 kcal Atomic # 7 Polarization: -59.48 SS G_CDS: 0.29 Total: -59.19 kcal Atomic # 8 Polarization: -7.65 SS G_CDS: 0.08 Total: -7.58 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -33.37 -9.00 -42.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676965114.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.468 kcal (2) G-P(sol) polarization free energy of solvation -33.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds