Wall clock time and date at job start Tue Mar 31 2020 19:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47010 * 2 1 4 4 C 1.50700 * 109.47436 * 240.00266 * 2 1 3 5 5 C 1.39673 * 126.06864 * 84.99680 * 4 2 1 6 6 C 1.38413 * 105.35735 * 179.97438 * 5 4 2 7 7 C 1.47166 * 126.88004 * 179.97438 * 6 5 4 8 8 O 1.21627 * 119.99634 * 174.28296 * 7 6 5 9 9 N 1.34771 * 119.99978 * 354.27791 * 7 6 5 10 10 C 1.46505 * 119.99780 * 185.13948 * 9 7 6 11 11 H 1.08996 * 110.01911 * 34.30015 * 10 9 7 12 12 C 1.54267 * 110.03205 * 272.90953 * 10 9 7 13 13 C 1.54963 * 104.15929 * 217.13483 * 12 10 9 14 14 C 1.54885 * 102.77998 * 37.89062 * 13 12 10 15 15 H 1.09002 * 110.48484 * 80.75417 * 14 13 12 16 16 C 1.52996 * 110.49112 * 203.40379 * 14 13 12 17 17 N 1.46503 * 109.46932 * 289.77615 * 16 14 13 18 18 C 1.36940 * 119.99777 * 179.97438 * 17 16 14 19 19 H 1.08001 * 119.99801 * 0.02562 * 18 17 16 20 20 C 1.38809 * 119.99581 * 179.97438 * 18 17 16 21 21 N 1.31614 * 120.00597 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99514 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47459 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46937 * 120.00045 * 22 20 18 25 25 H 1.48505 * 109.47318 * 239.99898 * 22 20 18 26 26 C 1.53874 * 110.03043 * 155.69351 * 10 9 7 27 27 N 1.36591 * 106.23180 * 0.02562 * 6 5 4 28 28 C 1.46504 * 125.19141 * 180.02562 * 27 6 5 29 29 N 1.28445 * 109.62096 * 359.76421 * 27 6 5 30 30 H 1.09004 * 109.47056 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47491 * 299.99663 * 1 2 3 32 32 H 1.08993 * 109.47630 * 60.00318 * 1 2 3 33 33 H 1.09003 * 109.47602 * 119.99911 * 2 1 3 34 34 H 1.09004 * 109.47062 * 60.00225 * 3 2 1 35 35 H 1.09003 * 109.47505 * 179.97438 * 3 2 1 36 36 H 1.08999 * 109.47347 * 300.00254 * 3 2 1 37 37 H 1.08000 * 127.31943 * 359.97438 * 5 4 2 38 38 H 0.96996 * 120.00374 * 5.14502 * 9 7 6 39 39 H 1.09000 * 110.48851 * 335.78816 * 12 10 9 40 40 H 1.09005 * 110.48653 * 98.42932 * 12 10 9 41 41 H 1.09004 * 110.72042 * 279.57214 * 13 12 10 42 42 H 1.09008 * 110.91887 * 156.29841 * 13 12 10 43 43 H 1.09001 * 109.46659 * 49.77129 * 16 14 13 44 44 H 1.08997 * 109.47076 * 169.77519 * 16 14 13 45 45 H 0.96995 * 120.00105 * 359.97438 * 17 16 14 46 46 H 0.97002 * 120.00450 * 179.97438 * 21 20 18 47 47 H 1.09004 * 110.03244 * 238.56732 * 26 10 9 48 48 H 1.08993 * 110.03228 * 359.95387 * 26 10 9 49 49 H 1.09001 * 109.47313 * 93.85963 * 28 27 6 50 50 H 1.08995 * 109.47151 * 213.86035 * 28 27 6 51 51 H 1.09002 * 109.46578 * 333.86218 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2305 5 6 2.2137 -0.1403 -2.4926 6 6 2.6861 -1.1656 -3.2935 7 6 3.0352 -1.0823 -4.7207 8 8 3.5387 -2.0377 -5.2803 9 7 2.7969 0.0525 -5.4076 10 6 3.0391 0.0991 -6.8517 11 1 2.8121 -0.8683 -7.2996 12 6 4.5086 0.4780 -7.1290 13 6 4.4363 1.3823 -8.3854 14 6 3.1451 2.2027 -8.1431 15 1 3.3421 3.0323 -7.4641 16 6 2.5805 2.7166 -9.4690 17 7 3.4616 3.7575 -10.0042 18 6 3.1572 4.3683 -11.1915 19 1 2.2675 4.0829 -11.7330 20 6 3.9918 5.3549 -11.6983 21 7 5.0758 5.7031 -11.0381 22 14 3.5762 6.1885 -13.3175 23 1 2.3141 5.6215 -13.8566 24 1 3.4075 7.6470 -13.0944 25 1 4.6765 5.9603 -14.2885 26 6 2.1724 1.1950 -7.4964 27 7 2.7623 -2.2705 -2.4939 28 6 3.2160 -3.5951 -2.9251 29 7 2.3805 -1.9696 -1.3050 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5137 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 1.6766 1.9563 0.8900 35 1 3.1299 1.4426 0.0005 36 1 1.6766 1.9564 -0.8899 37 1 2.0253 0.8830 -2.7821 38 1 2.4651 0.8383 -4.9458 39 1 4.9263 1.0287 -6.2862 40 1 5.1005 -0.4142 -7.3338 41 1 4.3474 0.7799 -9.2895 42 1 5.3053 2.0378 -8.4436 43 1 2.5171 1.8932 -10.1803 44 1 1.5862 3.1317 -9.3039 45 1 4.2605 4.0141 -9.5176 46 1 5.6592 6.3923 -11.3924 47 1 1.5252 0.7595 -8.2578 48 1 1.5710 1.6915 -6.7349 49 1 4.2808 -3.6999 -2.7170 50 1 2.6628 -4.3626 -2.3839 51 1 3.0420 -3.7081 -3.9952 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001676965114.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:44:05 Heat of formation + Delta-G solvation = 8.124097 kcal Electronic energy + Delta-G solvation = -28446.709311 eV Core-core repulsion = 24574.159621 eV Total energy + Delta-G solvation = -3872.549690 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.62292 -40.91544 -39.14497 -36.90211 -36.44678 -34.96530 -33.34334 -32.99093 -31.90748 -30.12797 -28.94637 -27.98331 -27.67509 -26.26242 -24.54874 -23.90714 -23.45733 -21.66768 -21.36734 -21.01191 -20.20819 -19.06796 -18.79041 -17.59320 -17.36282 -16.92878 -16.70537 -16.16901 -15.84756 -15.72920 -15.32177 -15.11971 -15.04706 -14.96629 -14.64615 -14.51888 -14.38761 -14.14242 -13.57264 -13.46449 -13.40745 -13.14781 -12.92815 -12.86278 -12.81984 -12.40202 -12.29908 -12.13094 -12.11162 -12.06475 -11.99668 -11.77883 -11.61807 -11.52574 -11.46252 -11.45257 -11.16666 -10.89946 -10.36226 -10.01262 -9.87454 -8.95636 -7.93425 -5.21165 0.17798 1.34942 1.48381 1.48804 1.52280 1.58929 2.09989 2.15019 2.57529 3.37595 3.40287 3.45794 3.59300 3.65434 3.90004 3.92212 4.14144 4.19154 4.25163 4.30088 4.33720 4.42208 4.46806 4.51313 4.53817 4.56346 4.61067 4.63325 4.69209 4.74273 4.79922 4.88618 4.90779 5.06058 5.07869 5.09054 5.10018 5.17321 5.22661 5.25167 5.39824 5.43606 5.47224 5.49082 5.51525 5.56331 5.59314 5.71407 6.29740 6.38134 6.99187 7.07440 7.35961 8.14194 8.36458 9.30416 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.018257 B = 0.001985 C = 0.001857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.321871 B =14101.254934 C =15073.175568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.010 4.010 3 C -0.142 4.142 4 C 0.026 3.974 5 C -0.174 4.174 6 C -0.054 4.054 7 C 0.592 3.408 8 O -0.570 6.570 9 N -0.692 5.692 10 C 0.153 3.847 11 H 0.086 0.914 12 C -0.123 4.123 13 C -0.110 4.110 14 C -0.088 4.088 15 H 0.074 0.926 16 C 0.157 3.843 17 N -0.745 5.745 18 C -0.242 4.242 19 H 0.075 0.925 20 C -0.078 4.078 21 N -0.970 5.970 22 Si 0.972 3.028 23 H -0.266 1.266 24 H -0.293 1.293 25 H -0.295 1.295 26 C -0.110 4.110 27 N -0.268 5.268 28 C 0.082 3.918 29 N -0.299 5.299 30 H 0.043 0.957 31 H 0.078 0.922 32 H 0.060 0.940 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.050 0.950 36 H 0.068 0.932 37 H 0.186 0.814 38 H 0.416 0.584 39 H 0.072 0.928 40 H 0.063 0.937 41 H 0.060 0.940 42 H 0.051 0.949 43 H 0.019 0.981 44 H 0.022 0.978 45 H 0.374 0.626 46 H 0.250 0.750 47 H 0.084 0.916 48 H 0.095 0.905 49 H 0.090 0.910 50 H 0.108 0.892 51 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.801 -15.175 24.140 29.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.030 4.030 3 C -0.199 4.199 4 C -0.130 4.130 5 C -0.203 4.203 6 C -0.182 4.182 7 C 0.378 3.622 8 O -0.450 6.450 9 N -0.344 5.344 10 C 0.049 3.951 11 H 0.104 0.896 12 C -0.162 4.162 13 C -0.148 4.148 14 C -0.107 4.107 15 H 0.092 0.908 16 C 0.031 3.969 17 N -0.387 5.387 18 C -0.374 4.374 19 H 0.093 0.907 20 C -0.270 4.270 21 N -0.621 5.621 22 Si 0.801 3.199 23 H -0.190 1.190 24 H -0.220 1.220 25 H -0.222 1.222 26 C -0.148 4.148 27 N -0.055 5.055 28 C -0.057 4.057 29 N -0.132 5.132 30 H 0.062 0.938 31 H 0.097 0.903 32 H 0.080 0.920 33 H 0.098 0.902 34 H 0.095 0.905 35 H 0.069 0.931 36 H 0.087 0.913 37 H 0.203 0.797 38 H 0.254 0.746 39 H 0.090 0.910 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.070 0.930 43 H 0.037 0.963 44 H 0.040 0.960 45 H 0.206 0.794 46 H 0.059 0.941 47 H 0.103 0.897 48 H 0.113 0.887 49 H 0.108 0.892 50 H 0.126 0.874 51 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -8.449 -16.996 24.131 30.701 hybrid contribution 0.454 1.505 -1.249 2.008 sum -7.995 -15.491 22.882 28.766 Atomic orbital electron populations 1.21788 0.93067 1.01631 1.03109 1.19540 0.96260 0.95561 0.91650 1.21831 1.00932 0.93704 1.03477 1.22434 1.03350 0.89811 0.97425 1.22416 1.05129 1.00333 0.92428 1.21482 1.12733 0.90059 0.93926 1.17046 0.77719 0.83333 0.84121 1.90771 1.45115 1.38208 1.70889 1.45800 1.66196 1.13504 1.08867 1.21591 0.94769 1.00031 0.78741 0.89597 1.22698 0.96356 0.99262 0.97883 1.22403 0.97528 0.97392 0.97472 1.22027 0.95332 0.97520 0.95850 0.90801 1.20889 0.92897 0.90012 0.93130 1.42584 1.28116 1.43837 1.24191 1.19684 1.05765 1.13637 0.98269 0.90714 1.25552 0.97699 1.01185 1.02591 1.69815 1.16026 1.35059 1.41191 0.85093 0.77446 0.77844 0.79510 1.19047 1.22022 1.22217 1.22338 0.97152 0.94768 1.00568 1.45774 1.44671 1.10258 1.04780 1.22464 1.01906 0.78357 1.02998 1.73113 1.17935 1.19015 1.03186 0.93781 0.90317 0.92049 0.90204 0.90473 0.93082 0.91312 0.79662 0.74570 0.90959 0.91797 0.92114 0.92986 0.96305 0.95989 0.79408 0.94079 0.89708 0.88672 0.89154 0.87359 0.87811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.18 71.98 0.66 -0.80 16 2 C -0.01 -0.13 3.38 -11.54 -0.04 -0.16 16 3 C -0.14 -1.33 8.79 71.98 0.63 -0.70 16 4 C 0.03 0.47 6.13 43.05 0.26 0.73 16 5 C -0.17 -2.87 9.65 22.66 0.22 -2.65 16 6 C -0.05 -1.10 6.96 40.79 0.28 -0.82 16 7 C 0.59 13.10 7.77 86.59 0.67 13.77 16 8 O -0.57 -15.81 14.40 -4.12 -0.06 -15.87 16 9 N -0.69 -12.30 5.03 -442.62 -2.23 -14.53 16 10 C 0.15 3.18 3.19 45.71 0.15 3.33 16 11 H 0.09 1.96 7.66 -2.39 -0.02 1.94 16 12 C -0.12 -2.97 6.54 31.69 0.21 -2.77 16 13 C -0.11 -3.23 6.19 31.91 0.20 -3.03 16 14 C -0.09 -2.53 2.89 -9.72 -0.03 -2.56 16 15 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 16 C 0.16 5.94 5.54 86.38 0.48 6.42 16 17 N -0.74 -37.24 5.49 -343.45 -1.89 -39.13 16 18 C -0.24 -13.44 9.99 84.03 0.84 -12.60 16 19 H 0.07 4.00 7.83 -2.91 -0.02 3.98 16 20 C -0.08 -4.50 5.50 84.86 0.47 -4.03 16 21 N -0.97 -59.33 13.06 21.65 0.28 -59.05 16 22 Si 0.97 46.11 29.55 68.60 2.03 48.13 16 23 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 24 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 25 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 26 C -0.11 -2.23 6.14 31.32 0.19 -2.04 16 27 N -0.27 -5.69 3.75 -356.01 -1.33 -7.02 16 28 C 0.08 1.34 10.88 127.77 1.39 2.73 16 29 N -0.30 -6.55 11.90 -47.49 -0.57 -7.11 16 30 H 0.04 0.57 8.14 -2.38 -0.02 0.55 16 31 H 0.08 0.57 8.14 -2.39 -0.02 0.56 16 32 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.08 0.52 8.14 -2.38 -0.02 0.50 16 35 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.07 0.55 7.37 -2.39 -0.02 0.53 16 37 H 0.19 1.85 7.05 -2.91 -0.02 1.83 16 38 H 0.42 5.18 7.34 -92.71 -0.68 4.50 16 39 H 0.07 1.69 8.05 -2.39 -0.02 1.67 16 40 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 41 H 0.06 1.89 7.97 -2.39 -0.02 1.87 16 42 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 43 H 0.02 0.73 8.02 -2.39 -0.02 0.71 16 44 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 45 H 0.37 19.90 7.64 -92.71 -0.71 19.19 16 46 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 47 H 0.08 1.69 7.84 -2.38 -0.02 1.67 16 48 H 0.09 1.50 7.61 -2.39 -0.02 1.48 16 49 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 50 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 51 H 0.10 1.87 6.22 -2.39 -0.01 1.85 16 Total: -1.00 -71.79 409.83 2.36 -69.43 By element: Atomic # 1 Polarization: 30.80 SS G_CDS: -0.46 Total: 30.34 kcal Atomic # 6 Polarization: -11.77 SS G_CDS: 6.58 Total: -5.18 kcal Atomic # 7 Polarization: -121.11 SS G_CDS: -5.73 Total: -126.84 kcal Atomic # 8 Polarization: -15.81 SS G_CDS: -0.06 Total: -15.87 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.13 kcal Total: -71.79 2.36 -69.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676965114.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.552 kcal (2) G-P(sol) polarization free energy of solvation -71.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds