Wall clock time and date at job start Tue Mar 31 2020 19:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46869 * 2 1 4 4 C 1.50699 * 109.46897 * 119.99714 * 2 1 3 5 5 N 1.30448 * 125.99327 * 299.97693 * 4 2 1 6 6 N 1.39936 * 108.90120 * 179.97438 * 5 4 2 7 7 C 1.46489 * 125.75299 * 179.97438 * 6 5 4 8 8 C 1.34264 * 108.48840 * 359.97438 * 6 5 4 9 9 C 1.38044 * 107.41740 * 0.26385 * 8 6 5 10 10 C 1.47425 * 126.41008 * 179.71784 * 9 8 6 11 11 O 1.21608 * 119.99512 * 180.02562 * 10 9 8 12 12 N 1.34772 * 120.00416 * 0.02631 * 10 9 8 13 13 C 1.46508 * 120.00190 * 179.97438 * 12 10 9 14 14 H 1.09002 * 110.01270 * 34.29544 * 13 12 10 15 15 C 1.54269 * 110.02838 * 272.90980 * 13 12 10 16 16 C 1.54967 * 104.15709 * 217.13399 * 15 13 12 17 17 C 1.54899 * 102.77381 * 37.88787 * 16 15 13 18 18 H 1.08998 * 110.48528 * 80.76794 * 17 16 15 19 19 C 1.53004 * 110.59549 * 203.34920 * 17 16 15 20 20 N 1.46504 * 109.47070 * 289.84288 * 19 17 16 21 21 C 1.36936 * 119.99847 * 180.02562 * 20 19 17 22 22 H 1.07997 * 120.00116 * 359.97438 * 21 20 19 23 23 C 1.38813 * 119.99768 * 180.02562 * 21 20 19 24 24 N 1.31613 * 120.00253 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99943 * 179.97438 * 23 21 20 26 26 H 1.48495 * 109.47332 * 89.99617 * 25 23 21 27 27 H 1.48494 * 109.47033 * 209.99898 * 25 23 21 28 28 H 1.48505 * 109.46997 * 329.99771 * 25 23 21 29 29 C 1.53870 * 110.02991 * 155.69162 * 13 12 10 30 30 H 1.09000 * 109.47319 * 60.00077 * 1 2 3 31 31 H 1.09003 * 109.47244 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47376 * 300.00123 * 1 2 3 33 33 H 1.09001 * 109.47376 * 239.99877 * 2 1 3 34 34 H 1.09003 * 109.46687 * 179.97438 * 3 2 1 35 35 H 1.08991 * 109.47387 * 299.99509 * 3 2 1 36 36 H 1.08998 * 109.46967 * 60.00245 * 3 2 1 37 37 H 1.09001 * 109.47217 * 269.99686 * 7 6 5 38 38 H 1.08997 * 109.47690 * 29.99740 * 7 6 5 39 39 H 1.09004 * 109.47021 * 150.00393 * 7 6 5 40 40 H 1.08002 * 126.28609 * 179.97438 * 8 6 5 41 41 H 0.96994 * 119.99897 * 359.97438 * 12 10 9 42 42 H 1.08998 * 110.49027 * 335.78112 * 15 13 12 43 43 H 1.08992 * 110.48897 * 98.42699 * 15 13 12 44 44 H 1.08999 * 110.72377 * 279.57573 * 16 15 13 45 45 H 1.08996 * 110.92376 * 156.29322 * 16 15 13 46 46 H 1.08990 * 109.47351 * 49.84292 * 19 17 16 47 47 H 1.09001 * 109.46731 * 169.84244 * 19 17 16 48 48 H 0.96997 * 120.00206 * 359.97438 * 20 19 17 49 49 H 0.97001 * 120.00103 * 180.02562 * 24 23 21 50 50 H 1.09004 * 110.02896 * 238.56762 * 29 13 12 51 51 H 1.08995 * 110.03733 * 359.95158 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0322 -0.7103 1.2305 5 7 1.7906 -0.3678 2.4658 6 7 2.4296 -1.2729 3.3205 7 6 2.4022 -1.2330 4.7846 8 6 3.0721 -2.1841 2.5723 9 6 2.8512 -1.8616 1.2484 10 6 3.3706 -2.5846 0.0733 11 8 3.1021 -2.1958 -1.0473 12 7 4.1428 -3.6764 0.2407 13 6 4.6584 -4.3952 -0.9271 14 1 4.8727 -3.6929 -1.7327 15 6 3.6293 -5.4430 -1.3994 16 6 4.4942 -6.6468 -1.8514 17 6 5.6354 -6.6609 -0.8041 18 1 5.3045 -7.1463 0.1141 19 6 6.8720 -7.3658 -1.3651 20 7 6.6031 -8.8009 -1.4866 21 6 7.5713 -9.6404 -1.9693 22 1 8.5329 -9.2446 -2.2609 23 6 7.3163 -11.0000 -2.0849 24 7 6.1443 -11.4823 -1.7301 25 14 8.6368 -12.1452 -2.7442 26 1 9.4630 -12.6485 -1.6176 27 1 7.9965 -13.2907 -3.4390 28 1 9.5005 -11.4064 -3.7000 29 6 5.9334 -5.1690 -0.5490 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8899 36 1 1.6766 1.9563 0.8900 37 1 3.2352 -0.6307 5.1473 38 1 1.4629 -0.7925 5.1186 39 1 2.4885 -2.2461 5.1774 40 1 3.6582 -3.0138 2.9391 41 1 4.3572 -3.9863 1.1345 42 1 2.9739 -5.7315 -0.5776 43 1 3.0467 -5.0557 -2.2352 44 1 4.8912 -6.4820 -2.8530 45 1 3.9221 -7.5737 -1.8118 46 1 7.1096 -6.9564 -2.3468 47 1 7.7155 -7.2098 -0.6926 48 1 5.7396 -9.1564 -1.2244 49 1 5.9662 -12.4324 -1.8105 50 1 6.7665 -4.8430 -1.1718 51 1 6.1692 -5.0092 0.5030 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001676970411.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:44:32 Heat of formation + Delta-G solvation = 4.452830 kcal Electronic energy + Delta-G solvation = -28510.472359 eV Core-core repulsion = 24637.763471 eV Total energy + Delta-G solvation = -3872.708888 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.47220 -40.62370 -38.98205 -36.82222 -36.33495 -34.72398 -33.41888 -32.90101 -31.36109 -30.09662 -28.87593 -28.03525 -27.75201 -26.16794 -24.12886 -23.84912 -23.18111 -21.56184 -21.17430 -20.96096 -20.02919 -19.06058 -18.61304 -17.39532 -16.83254 -16.68560 -16.65473 -15.96710 -15.79967 -15.63355 -15.51744 -15.28498 -15.05610 -14.93658 -14.49858 -14.36493 -14.26452 -14.03181 -13.53592 -13.49446 -13.32788 -13.12299 -12.98212 -12.84344 -12.77896 -12.37441 -12.37264 -12.14805 -12.11392 -12.04943 -11.94081 -11.77250 -11.68200 -11.59275 -11.49707 -11.43467 -10.88527 -10.65151 -10.35991 -10.05575 -9.57753 -8.95335 -7.92938 -5.20700 0.55206 1.12963 1.47971 1.48330 1.49902 1.58380 2.31879 2.49049 2.58048 3.35975 3.40502 3.62897 3.66006 3.67355 3.93574 3.97808 4.09651 4.20944 4.25998 4.26971 4.40204 4.44954 4.51417 4.55331 4.58289 4.60153 4.65358 4.66647 4.72743 4.75891 4.77931 4.82828 4.92913 4.93783 4.96445 5.10155 5.10641 5.15329 5.21028 5.28191 5.32215 5.33059 5.42454 5.50466 5.57938 5.59437 5.70289 5.93201 6.30057 6.54827 6.74053 7.36251 7.39112 8.14532 8.37153 9.30696 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.022745 B = 0.001937 C = 0.001858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.720387 B =14450.204555 C =15068.896245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.036 4.036 3 C -0.131 4.131 4 C 0.126 3.874 5 N -0.322 5.322 6 N -0.359 5.359 7 C 0.086 3.914 8 C 0.121 3.879 9 C -0.321 4.321 10 C 0.593 3.407 11 O -0.581 6.581 12 N -0.708 5.708 13 C 0.152 3.848 14 H 0.078 0.922 15 C -0.123 4.123 16 C -0.110 4.110 17 C -0.087 4.087 18 H 0.074 0.926 19 C 0.157 3.843 20 N -0.744 5.744 21 C -0.243 4.243 22 H 0.074 0.926 23 C -0.078 4.078 24 N -0.970 5.970 25 Si 0.973 3.027 26 H -0.286 1.286 27 H -0.296 1.296 28 H -0.271 1.271 29 C -0.109 4.109 30 H 0.075 0.925 31 H 0.043 0.957 32 H 0.057 0.943 33 H 0.096 0.904 34 H 0.044 0.956 35 H 0.075 0.925 36 H 0.057 0.943 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.123 0.877 40 H 0.227 0.773 41 H 0.411 0.589 42 H 0.072 0.928 43 H 0.059 0.941 44 H 0.057 0.943 45 H 0.051 0.949 46 H 0.017 0.983 47 H 0.022 0.978 48 H 0.374 0.626 49 H 0.250 0.750 50 H 0.080 0.920 51 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.731 25.620 14.458 30.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.056 4.056 3 C -0.189 4.189 4 C -0.041 4.041 5 N -0.144 5.144 6 N -0.136 5.136 7 C -0.053 4.053 8 C -0.032 4.032 9 C -0.336 4.336 10 C 0.382 3.618 11 O -0.462 6.462 12 N -0.359 5.359 13 C 0.047 3.953 14 H 0.096 0.904 15 C -0.161 4.161 16 C -0.148 4.148 17 C -0.106 4.106 18 H 0.093 0.907 19 C 0.031 3.969 20 N -0.387 5.387 21 C -0.375 4.375 22 H 0.092 0.908 23 C -0.270 4.270 24 N -0.621 5.621 25 Si 0.802 3.198 26 H -0.213 1.213 27 H -0.223 1.223 28 H -0.196 1.196 29 C -0.147 4.147 30 H 0.094 0.906 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.114 0.886 34 H 0.064 0.936 35 H 0.094 0.906 36 H 0.076 0.924 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.141 0.859 40 H 0.243 0.757 41 H 0.249 0.751 42 H 0.091 0.909 43 H 0.078 0.922 44 H 0.076 0.924 45 H 0.070 0.930 46 H 0.035 0.965 47 H 0.040 0.960 48 H 0.206 0.794 49 H 0.059 0.941 50 H 0.098 0.902 51 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -9.324 26.727 14.584 31.842 hybrid contribution 0.744 -1.929 -0.529 2.134 sum -8.580 24.798 14.055 29.767 Atomic orbital electron populations 1.21714 0.93156 1.01455 1.02663 1.19963 0.96642 0.96180 0.92855 1.21708 1.00448 0.94098 1.02650 1.22539 0.94378 0.93519 0.93713 1.77093 1.21384 1.15613 1.00289 1.48724 1.36605 1.19813 1.08492 1.22403 1.05433 1.06592 0.70841 1.23667 0.94897 0.94929 0.89714 1.20295 1.15252 1.04678 0.93413 1.17499 0.77228 0.79502 0.87558 1.90681 1.60421 1.68454 1.26676 1.45876 1.51767 1.28126 1.10148 1.21453 0.92935 0.92759 0.88123 0.90390 1.22687 0.97635 0.94875 1.00929 1.22396 0.96390 0.97446 0.98556 1.22018 0.94554 0.95571 0.98465 0.90726 1.20888 0.95807 0.83287 0.96944 1.42574 1.15298 1.03080 1.77745 1.19649 0.94999 0.89468 1.33396 0.90767 1.25559 0.99223 0.98617 1.03617 1.69811 1.23475 1.12743 1.56036 0.85150 0.78359 0.78424 0.77902 1.21302 1.22310 1.19559 1.22316 0.96439 0.92471 1.03464 0.90626 0.93782 0.92365 0.88564 0.93632 0.90628 0.92395 0.88789 0.88843 0.85874 0.75680 0.75147 0.90927 0.92249 0.92383 0.93019 0.96501 0.95962 0.79398 0.94073 0.90181 0.88647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.50 9.17 71.98 0.66 -1.84 16 2 C -0.04 -0.79 3.26 -11.54 -0.04 -0.83 16 3 C -0.13 -2.43 9.18 71.98 0.66 -1.77 16 4 C 0.13 2.87 5.77 43.52 0.25 3.12 16 5 N -0.32 -6.75 12.50 -46.67 -0.58 -7.34 16 6 N -0.36 -4.88 3.98 -367.80 -1.46 -6.35 16 7 C 0.09 0.33 11.44 127.77 1.46 1.79 16 8 C 0.12 1.50 10.99 84.27 0.93 2.43 16 9 C -0.32 -6.66 6.13 -20.15 -0.12 -6.78 16 10 C 0.59 14.31 7.81 86.66 0.68 14.99 16 11 O -0.58 -18.46 14.23 -4.06 -0.06 -18.52 16 12 N -0.71 -13.22 5.03 -442.35 -2.23 -15.44 16 13 C 0.15 3.44 3.23 45.71 0.15 3.59 16 14 H 0.08 2.03 7.58 -2.39 -0.02 2.01 16 15 C -0.12 -3.15 6.54 31.70 0.21 -2.94 16 16 C -0.11 -3.36 6.20 31.92 0.20 -3.16 16 17 C -0.09 -2.56 2.88 -9.72 -0.03 -2.59 16 18 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 19 C 0.16 6.06 5.55 86.38 0.48 6.54 16 20 N -0.74 -37.60 5.49 -343.45 -1.89 -39.49 16 21 C -0.24 -13.63 9.99 84.03 0.84 -12.79 16 22 H 0.07 4.00 7.83 -2.91 -0.02 3.97 16 23 C -0.08 -4.51 5.50 84.86 0.47 -4.04 16 24 N -0.97 -59.50 13.06 21.65 0.28 -59.22 16 25 Si 0.97 46.28 29.55 68.60 2.03 48.30 16 26 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 27 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 28 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 29 C -0.11 -2.33 6.14 31.32 0.19 -2.13 16 30 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.04 0.90 8.14 -2.39 -0.02 0.89 16 32 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.10 2.56 5.60 -2.39 -0.01 2.55 16 34 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.09 0.14 8.14 -2.39 -0.02 0.12 16 38 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 39 H 0.12 -0.27 8.14 -2.38 -0.02 -0.29 16 40 H 0.23 0.51 7.46 -2.91 -0.02 0.49 16 41 H 0.41 4.77 7.23 -92.71 -0.67 4.10 16 42 H 0.07 1.78 8.05 -2.39 -0.02 1.76 16 43 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 44 H 0.06 1.89 7.97 -2.39 -0.02 1.87 16 45 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 46 H 0.02 0.67 8.02 -2.39 -0.02 0.65 16 47 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 48 H 0.37 20.06 7.64 -92.71 -0.71 19.35 16 49 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 50 H 0.08 1.73 7.84 -2.38 -0.02 1.71 16 51 H 0.10 1.54 7.61 -2.39 -0.02 1.52 16 Total: -1.00 -77.85 411.94 2.62 -75.23 By element: Atomic # 1 Polarization: 29.69 SS G_CDS: -0.45 Total: 29.24 kcal Atomic # 6 Polarization: -13.40 SS G_CDS: 6.98 Total: -6.43 kcal Atomic # 7 Polarization: -121.96 SS G_CDS: -5.88 Total: -127.83 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: -0.06 Total: -18.52 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.30 kcal Total: -77.85 2.62 -75.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676970411.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.684 kcal (2) G-P(sol) polarization free energy of solvation -77.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds