Wall clock time and date at job start Tue Mar 31 2020 19:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 109.47137 * 2 1 4 4 C 1.50694 * 109.47075 * 120.00384 * 2 1 3 5 5 N 1.30445 * 125.98793 * 300.04026 * 4 2 1 6 6 N 1.39937 * 108.89823 * 179.97438 * 5 4 2 7 7 C 1.46499 * 125.75629 * 179.97438 * 6 5 4 8 8 C 1.34263 * 108.49047 * 359.74850 * 6 5 4 9 9 C 1.38043 * 107.41711 * 0.39706 * 8 6 5 10 10 C 1.47430 * 126.41751 * 179.87417 * 9 8 6 11 11 O 1.21602 * 120.00245 * 179.68581 * 10 9 8 12 12 N 1.34783 * 119.99727 * 359.68520 * 10 9 8 13 13 C 1.46496 * 119.99709 * 180.02562 * 12 10 9 14 14 H 1.08995 * 110.02111 * 326.38949 * 13 12 10 15 15 C 1.53882 * 110.07309 * 87.81040 * 13 12 10 16 16 C 1.54267 * 106.59905 * 119.30308 * 15 13 12 17 17 C 1.54889 * 104.19467 * 23.60979 * 16 15 13 18 18 H 1.08999 * 110.91491 * 80.44193 * 17 16 15 19 19 C 1.53001 * 110.75493 * 203.73936 * 17 16 15 20 20 N 1.46490 * 109.47264 * 288.32759 * 19 17 16 21 21 C 1.36935 * 120.00121 * 179.97438 * 20 19 17 22 22 H 1.07997 * 120.00139 * 0.02562 * 21 20 19 23 23 C 1.38816 * 120.00401 * 180.02562 * 21 20 19 24 24 N 1.31624 * 119.99569 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00172 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47055 * 180.02562 * 25 23 21 27 27 H 1.48505 * 109.46653 * 299.99639 * 25 23 21 28 28 H 1.48495 * 109.47483 * 60.00002 * 25 23 21 29 29 C 1.54271 * 110.02885 * 204.99850 * 13 12 10 30 30 H 1.09009 * 109.47331 * 299.99741 * 1 2 3 31 31 H 1.09001 * 109.47766 * 59.99783 * 1 2 3 32 32 H 1.09007 * 109.47604 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46481 * 240.00240 * 2 1 3 34 34 H 1.09001 * 109.47140 * 179.97438 * 3 2 1 35 35 H 1.08996 * 109.47394 * 299.99903 * 3 2 1 36 36 H 1.08997 * 109.46882 * 60.00407 * 3 2 1 37 37 H 1.09003 * 109.46982 * 90.02476 * 7 6 5 38 38 H 1.08997 * 109.47309 * 210.02021 * 7 6 5 39 39 H 1.08995 * 109.47214 * 330.02643 * 7 6 5 40 40 H 1.08001 * 126.28883 * 180.24558 * 8 6 5 41 41 H 0.97005 * 119.99773 * 359.97438 * 12 10 9 42 42 H 1.09004 * 110.02606 * 238.58771 * 15 13 12 43 43 H 1.09002 * 110.03061 * 359.96704 * 15 13 12 44 44 H 1.08991 * 110.48623 * 264.93368 * 16 15 13 45 45 H 1.09000 * 110.48373 * 142.28652 * 16 15 13 46 46 H 1.09003 * 109.46836 * 168.32466 * 19 17 16 47 47 H 1.08999 * 109.47071 * 48.33505 * 19 17 16 48 48 H 0.97000 * 120.00577 * 0.02562 * 20 19 17 49 49 H 0.97001 * 119.99885 * 359.97438 * 24 23 21 50 50 H 1.08998 * 110.48457 * 98.37987 * 29 13 12 51 51 H 1.08997 * 110.48626 * 335.73699 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0322 -0.7105 1.2304 5 7 1.7896 -0.3687 2.4656 6 7 2.4290 -1.2736 3.3203 7 6 2.4009 -1.2344 4.7845 8 6 3.0686 -2.1867 2.5721 9 6 2.8481 -1.8639 1.2482 10 6 3.3622 -2.5905 0.0728 11 8 3.0895 -2.2046 -1.0477 12 7 4.1344 -3.6824 0.2403 13 6 4.6457 -4.4040 -0.9276 14 1 3.9207 -4.3598 -1.7403 15 6 5.9837 -3.7941 -1.3811 16 6 7.0388 -4.9141 -1.2695 17 6 6.2144 -6.2225 -1.3554 18 1 5.9703 -6.4613 -2.3906 19 6 6.9658 -7.3810 -0.6966 20 7 8.1026 -7.7663 -1.5364 21 6 8.9266 -8.7881 -1.1466 22 1 8.7381 -9.3104 -0.2203 23 6 10.0041 -9.1529 -1.9421 24 7 10.2341 -8.5160 -3.0709 25 14 11.1277 -10.5474 -1.4107 26 1 12.1945 -10.7378 -2.4260 27 1 11.7447 -10.2143 -0.1016 28 1 10.3376 -11.7980 -1.2817 29 6 4.9344 -5.8732 -0.5562 30 1 -0.3634 0.5138 0.8901 31 1 -0.3635 0.5138 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8932 -0.5138 -0.8901 34 1 3.1299 1.4425 0.0005 35 1 1.6767 1.9563 -0.8899 36 1 1.6766 1.9562 0.8900 37 1 1.5550 -1.8183 5.1474 38 1 3.3271 -1.6541 5.1771 39 1 2.2996 -0.2018 5.1184 40 1 3.6508 -3.0192 2.9387 41 1 4.3522 -3.9899 1.1341 42 1 5.9080 -3.4541 -2.4140 43 1 6.2530 -2.9605 -0.7326 44 1 7.5597 -4.8535 -0.3140 45 1 7.7472 -4.8545 -2.0958 46 1 6.2938 -8.2316 -0.5822 47 1 7.3271 -7.0692 0.2834 48 1 8.2722 -7.2970 -2.3682 49 1 9.6504 -7.7922 -3.3469 50 1 4.1071 -6.5136 -0.8620 51 1 5.1155 -5.9675 0.5144 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676970412.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:44:42 Heat of formation + Delta-G solvation = 27.664572 kcal Electronic energy + Delta-G solvation = -28556.960159 eV Core-core repulsion = 24685.257808 eV Total energy + Delta-G solvation = -3871.702352 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.81102 -39.69475 -37.90637 -36.07721 -34.94851 -33.58710 -32.78710 -31.26859 -30.43450 -28.71878 -27.79735 -27.31627 -27.07873 -24.23021 -23.25666 -22.57669 -22.39495 -20.70510 -20.42445 -19.45974 -19.28166 -17.91582 -17.19875 -16.50277 -16.14127 -16.01534 -15.51642 -15.02063 -14.84379 -14.68309 -14.50079 -14.10058 -13.71362 -13.64740 -13.45671 -13.42719 -13.24260 -13.21082 -13.03020 -12.78215 -12.33354 -12.22748 -11.70696 -11.65175 -11.63954 -11.38488 -11.18592 -10.99302 -10.90932 -10.76383 -10.60445 -10.50080 -10.31400 -10.22353 -9.96103 -9.75467 -9.71648 -9.18996 -9.13320 -8.88735 -8.84816 -6.96901 -6.08105 -3.07125 1.16086 1.90530 1.95376 3.14410 3.31739 3.52043 3.55923 3.73541 3.94205 4.17141 4.43308 4.60919 4.62082 4.66771 4.74870 4.77516 4.87279 4.91414 5.00433 5.02334 5.08103 5.26068 5.33986 5.44135 5.46323 5.55630 5.60507 5.64681 5.65361 5.68757 5.69400 5.80988 5.82777 5.89415 6.01433 6.05165 6.06582 6.11211 6.15847 6.27352 6.31690 6.39754 6.44431 6.51237 6.60108 6.75199 6.86669 7.24129 7.48476 7.82419 8.21440 8.78534 9.26722 10.13045 10.28522 11.40666 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.021902 B = 0.001967 C = 0.001864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.113869 B =14230.466761 C =15014.851148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.032 4.032 3 C -0.139 4.139 4 C 0.142 3.858 5 N -0.297 5.297 6 N -0.362 5.362 7 C 0.097 3.903 8 C 0.098 3.902 9 C -0.287 4.287 10 C 0.594 3.406 11 O -0.541 6.541 12 N -0.721 5.721 13 C 0.143 3.857 14 H 0.091 0.909 15 C -0.133 4.133 16 C -0.112 4.112 17 C -0.098 4.098 18 H 0.078 0.922 19 C 0.168 3.832 20 N -0.743 5.743 21 C -0.331 4.331 22 H 0.063 0.937 23 C -0.047 4.047 24 N -0.944 5.944 25 Si 1.080 2.920 26 H -0.285 1.285 27 H -0.296 1.296 28 H -0.296 1.296 29 C -0.120 4.120 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.118 0.882 34 H 0.054 0.946 35 H 0.062 0.938 36 H 0.056 0.944 37 H 0.079 0.921 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.182 0.818 41 H 0.395 0.605 42 H 0.068 0.932 43 H 0.064 0.936 44 H 0.065 0.935 45 H 0.067 0.933 46 H 0.018 0.982 47 H 0.018 0.982 48 H 0.367 0.633 49 H 0.255 0.745 50 H 0.071 0.929 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.578 17.827 14.637 30.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.052 4.052 3 C -0.197 4.197 4 C -0.025 4.025 5 N -0.118 5.118 6 N -0.140 5.140 7 C -0.044 4.044 8 C -0.054 4.054 9 C -0.302 4.302 10 C 0.382 3.618 11 O -0.419 6.419 12 N -0.372 5.372 13 C 0.039 3.961 14 H 0.110 0.890 15 C -0.172 4.172 16 C -0.150 4.150 17 C -0.117 4.117 18 H 0.096 0.904 19 C 0.040 3.960 20 N -0.389 5.389 21 C -0.462 4.462 22 H 0.081 0.919 23 C -0.245 4.245 24 N -0.590 5.590 25 Si 0.911 3.089 26 H -0.210 1.210 27 H -0.223 1.223 28 H -0.223 1.223 29 C -0.159 4.159 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.136 0.864 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.098 0.902 38 H 0.110 0.890 39 H 0.112 0.888 40 H 0.199 0.801 41 H 0.229 0.771 42 H 0.087 0.913 43 H 0.083 0.917 44 H 0.084 0.916 45 H 0.086 0.914 46 H 0.035 0.965 47 H 0.036 0.964 48 H 0.200 0.800 49 H 0.066 0.934 50 H 0.090 0.910 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -19.057 17.929 14.589 29.958 hybrid contribution -0.704 0.135 0.517 0.884 sum -19.761 18.064 15.107 30.741 Atomic orbital electron populations 1.21776 0.93923 1.01942 1.02028 1.19997 0.95950 0.95750 0.93524 1.21774 1.01171 0.94728 1.02019 1.22413 0.93822 0.92939 0.93367 1.77167 1.20174 1.14244 1.00175 1.48331 1.37914 1.20618 1.07131 1.21997 1.03827 1.05167 0.73438 1.23088 0.96489 0.94762 0.91017 1.20298 1.13602 1.03803 0.92506 1.17250 0.77380 0.79588 0.87619 1.90700 1.59287 1.66868 1.25030 1.46060 1.52285 1.29062 1.09790 1.21681 0.95704 0.90717 0.87972 0.89046 1.22589 0.94428 0.98433 1.01713 1.22347 0.97038 0.93193 1.02378 1.22290 0.93921 0.95641 0.99835 0.90402 1.20561 0.88968 0.93029 0.93418 1.42355 1.30760 1.41249 1.24498 1.20026 1.08513 1.11052 1.06584 0.91893 1.25779 0.98621 1.04229 0.95845 1.70879 1.40873 1.24565 1.22694 0.83238 0.75969 0.74740 0.74932 1.21034 1.22337 1.22305 1.22614 0.98440 0.94042 1.00760 0.92483 0.91910 0.92736 0.86374 0.92695 0.91902 0.92490 0.90207 0.88987 0.88847 0.80058 0.77127 0.91328 0.91720 0.91592 0.91388 0.96458 0.96375 0.79976 0.93393 0.90995 0.91039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.17 37.15 0.34 -0.93 16 2 C -0.03 -0.34 3.26 -91.78 -0.30 -0.64 16 3 C -0.14 -1.29 9.18 37.16 0.34 -0.95 16 4 C 0.14 1.63 5.77 -82.02 -0.47 1.16 16 5 N -0.30 -3.23 12.50 33.89 0.42 -2.81 16 6 N -0.36 -2.90 3.98 -67.60 -0.27 -3.17 16 7 C 0.10 0.34 11.44 59.85 0.68 1.02 16 8 C 0.10 0.75 10.99 -16.56 -0.18 0.57 16 9 C -0.29 -3.12 6.13 -105.06 -0.64 -3.77 16 10 C 0.59 7.35 7.81 -12.51 -0.10 7.25 16 11 O -0.54 -8.37 14.22 5.28 0.08 -8.30 16 12 N -0.72 -7.47 4.97 -53.79 -0.27 -7.74 16 13 C 0.14 1.72 3.24 -66.81 -0.22 1.50 16 14 H 0.09 1.21 7.56 -51.93 -0.39 0.82 16 15 C -0.13 -1.73 6.59 -25.61 -0.17 -1.90 16 16 C -0.11 -1.67 6.20 -25.07 -0.16 -1.83 16 17 C -0.10 -1.52 2.91 -88.62 -0.26 -1.78 16 18 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 19 C 0.17 3.34 5.70 -4.05 -0.02 3.31 16 20 N -0.74 -18.83 5.52 -59.91 -0.33 -19.16 16 21 C -0.33 -9.44 9.99 -15.06 -0.15 -9.59 16 22 H 0.06 1.76 7.83 -52.49 -0.41 1.35 16 23 C -0.05 -1.39 5.50 -17.43 -0.10 -1.49 16 24 N -0.94 -29.50 13.70 55.49 0.76 -28.74 16 25 Si 1.08 26.07 29.92 -169.99 -5.09 20.98 16 26 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 27 H -0.30 -6.80 7.11 56.52 0.40 -6.40 16 28 H -0.30 -6.81 7.11 56.52 0.40 -6.40 16 29 C -0.12 -1.44 5.97 -25.07 -0.15 -1.59 16 30 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.12 1.47 5.60 -51.93 -0.29 1.18 16 34 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 38 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 39 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.18 0.66 7.46 -52.49 -0.39 0.27 16 41 H 0.39 3.00 7.28 -40.82 -0.30 2.70 16 42 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.06 0.83 7.92 -51.93 -0.41 0.42 16 44 H 0.07 1.01 7.93 -51.93 -0.41 0.60 16 45 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 46 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 47 H 0.02 0.37 7.99 -51.93 -0.41 -0.05 16 48 H 0.37 9.51 6.50 -40.82 -0.27 9.24 16 49 H 0.25 7.83 6.77 -40.82 -0.28 7.56 16 50 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 51 H 0.07 0.77 7.64 -51.93 -0.40 0.37 16 LS Contribution 410.47 15.07 6.19 6.19 Total: -1.00 -36.31 410.47 -8.73 -45.04 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: -8.67 Total: 7.34 kcal Atomic # 6 Polarization: -8.09 SS G_CDS: -1.55 Total: -9.63 kcal Atomic # 7 Polarization: -61.93 SS G_CDS: 0.32 Total: -61.61 kcal Atomic # 8 Polarization: -8.37 SS G_CDS: 0.08 Total: -8.30 kcal Atomic # 14 Polarization: 26.07 SS G_CDS: -5.09 Total: 20.98 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -36.31 -8.73 -45.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676970412.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.702 kcal (2) G-P(sol) polarization free energy of solvation -36.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds