Wall clock time and date at job start Tue Mar 31 2020 19:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 109.47137 * 2 1 4 4 C 1.50694 * 109.47075 * 120.00384 * 2 1 3 5 5 N 1.30445 * 125.98793 * 300.04026 * 4 2 1 6 6 N 1.39937 * 108.89823 * 179.97438 * 5 4 2 7 7 C 1.46499 * 125.75629 * 179.97438 * 6 5 4 8 8 C 1.34263 * 108.49047 * 359.74850 * 6 5 4 9 9 C 1.38043 * 107.41711 * 0.39706 * 8 6 5 10 10 C 1.47430 * 126.41751 * 179.87417 * 9 8 6 11 11 O 1.21602 * 120.00245 * 179.68581 * 10 9 8 12 12 N 1.34783 * 119.99727 * 359.68520 * 10 9 8 13 13 C 1.46496 * 119.99709 * 180.02562 * 12 10 9 14 14 H 1.08995 * 110.02111 * 326.38949 * 13 12 10 15 15 C 1.53882 * 110.07309 * 87.81040 * 13 12 10 16 16 C 1.54267 * 106.59905 * 119.30308 * 15 13 12 17 17 C 1.54889 * 104.19467 * 23.60979 * 16 15 13 18 18 H 1.08999 * 110.91491 * 80.44193 * 17 16 15 19 19 C 1.53001 * 110.75493 * 203.73936 * 17 16 15 20 20 N 1.46490 * 109.47264 * 288.32759 * 19 17 16 21 21 C 1.36935 * 120.00121 * 179.97438 * 20 19 17 22 22 H 1.07997 * 120.00139 * 0.02562 * 21 20 19 23 23 C 1.38816 * 120.00401 * 180.02562 * 21 20 19 24 24 N 1.31624 * 119.99569 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00172 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47055 * 180.02562 * 25 23 21 27 27 H 1.48505 * 109.46653 * 299.99639 * 25 23 21 28 28 H 1.48495 * 109.47483 * 60.00002 * 25 23 21 29 29 C 1.54271 * 110.02885 * 204.99850 * 13 12 10 30 30 H 1.09009 * 109.47331 * 299.99741 * 1 2 3 31 31 H 1.09001 * 109.47766 * 59.99783 * 1 2 3 32 32 H 1.09007 * 109.47604 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46481 * 240.00240 * 2 1 3 34 34 H 1.09001 * 109.47140 * 179.97438 * 3 2 1 35 35 H 1.08996 * 109.47394 * 299.99903 * 3 2 1 36 36 H 1.08997 * 109.46882 * 60.00407 * 3 2 1 37 37 H 1.09003 * 109.46982 * 90.02476 * 7 6 5 38 38 H 1.08997 * 109.47309 * 210.02021 * 7 6 5 39 39 H 1.08995 * 109.47214 * 330.02643 * 7 6 5 40 40 H 1.08001 * 126.28883 * 180.24558 * 8 6 5 41 41 H 0.97005 * 119.99773 * 359.97438 * 12 10 9 42 42 H 1.09004 * 110.02606 * 238.58771 * 15 13 12 43 43 H 1.09002 * 110.03061 * 359.96704 * 15 13 12 44 44 H 1.08991 * 110.48623 * 264.93368 * 16 15 13 45 45 H 1.09000 * 110.48373 * 142.28652 * 16 15 13 46 46 H 1.09003 * 109.46836 * 168.32466 * 19 17 16 47 47 H 1.08999 * 109.47071 * 48.33505 * 19 17 16 48 48 H 0.97000 * 120.00577 * 0.02562 * 20 19 17 49 49 H 0.97001 * 119.99885 * 359.97438 * 24 23 21 50 50 H 1.08998 * 110.48457 * 98.37987 * 29 13 12 51 51 H 1.08997 * 110.48626 * 335.73699 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0322 -0.7105 1.2304 5 7 1.7896 -0.3687 2.4656 6 7 2.4290 -1.2736 3.3203 7 6 2.4009 -1.2344 4.7845 8 6 3.0686 -2.1867 2.5721 9 6 2.8481 -1.8639 1.2482 10 6 3.3622 -2.5905 0.0728 11 8 3.0895 -2.2046 -1.0477 12 7 4.1344 -3.6824 0.2403 13 6 4.6457 -4.4040 -0.9276 14 1 3.9207 -4.3598 -1.7403 15 6 5.9837 -3.7941 -1.3811 16 6 7.0388 -4.9141 -1.2695 17 6 6.2144 -6.2225 -1.3554 18 1 5.9703 -6.4613 -2.3906 19 6 6.9658 -7.3810 -0.6966 20 7 8.1026 -7.7663 -1.5364 21 6 8.9266 -8.7881 -1.1466 22 1 8.7381 -9.3104 -0.2203 23 6 10.0041 -9.1529 -1.9421 24 7 10.2341 -8.5160 -3.0709 25 14 11.1277 -10.5474 -1.4107 26 1 12.1945 -10.7378 -2.4260 27 1 11.7447 -10.2143 -0.1016 28 1 10.3376 -11.7980 -1.2817 29 6 4.9344 -5.8732 -0.5562 30 1 -0.3634 0.5138 0.8901 31 1 -0.3635 0.5138 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8932 -0.5138 -0.8901 34 1 3.1299 1.4425 0.0005 35 1 1.6767 1.9563 -0.8899 36 1 1.6766 1.9562 0.8900 37 1 1.5550 -1.8183 5.1474 38 1 3.3271 -1.6541 5.1771 39 1 2.2996 -0.2018 5.1184 40 1 3.6508 -3.0192 2.9387 41 1 4.3522 -3.9899 1.1341 42 1 5.9080 -3.4541 -2.4140 43 1 6.2530 -2.9605 -0.7326 44 1 7.5597 -4.8535 -0.3140 45 1 7.7472 -4.8545 -2.0958 46 1 6.2938 -8.2316 -0.5822 47 1 7.3271 -7.0692 0.2834 48 1 8.2722 -7.2970 -2.3682 49 1 9.6504 -7.7922 -3.3469 50 1 4.1071 -6.5136 -0.8620 51 1 5.1155 -5.9675 0.5144 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001676970412.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:44:40 Heat of formation + Delta-G solvation = 3.594492 kcal Electronic energy + Delta-G solvation = -28558.003916 eV Core-core repulsion = 24685.257808 eV Total energy + Delta-G solvation = -3872.746109 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.49900 -40.68330 -39.06082 -36.91046 -36.57746 -34.84938 -33.44427 -32.87223 -31.36522 -30.04414 -28.88158 -28.05358 -27.76243 -25.99281 -24.28862 -24.03409 -23.20856 -21.60392 -21.49905 -20.62115 -20.06207 -19.30896 -18.63300 -17.50232 -17.00477 -16.78243 -16.60606 -16.33198 -15.74308 -15.68046 -15.52836 -15.37482 -15.08021 -15.01376 -14.83513 -14.31670 -14.30308 -14.03114 -13.60753 -13.52778 -13.34544 -13.00419 -12.93203 -12.75964 -12.64125 -12.56200 -12.39493 -12.13343 -12.06060 -11.97279 -11.86205 -11.80863 -11.72194 -11.66439 -11.50760 -11.18231 -10.88769 -10.69011 -10.38284 -10.11148 -9.60994 -9.08014 -8.38439 -5.31638 0.52410 1.10368 1.45659 1.59209 1.69667 1.85951 2.26166 2.45382 2.73453 3.33328 3.40996 3.54385 3.56561 3.64091 3.83932 3.95325 4.03248 4.07524 4.22463 4.24067 4.36963 4.39965 4.43299 4.46933 4.51177 4.55665 4.57077 4.61902 4.65412 4.71156 4.72831 4.76174 4.88370 4.91993 4.94181 4.98011 5.07733 5.10349 5.13513 5.17823 5.29002 5.30329 5.32705 5.46498 5.55322 5.60401 5.65329 5.90792 6.50814 6.51866 6.70142 7.12082 7.34874 8.03173 8.14220 9.13738 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.021902 B = 0.001967 C = 0.001864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.113869 B =14230.466761 C =15014.851148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.036 4.036 3 C -0.132 4.132 4 C 0.126 3.874 5 N -0.322 5.322 6 N -0.359 5.359 7 C 0.086 3.914 8 C 0.122 3.878 9 C -0.322 4.322 10 C 0.593 3.407 11 O -0.581 6.581 12 N -0.707 5.707 13 C 0.152 3.848 14 H 0.079 0.921 15 C -0.124 4.124 16 C -0.106 4.106 17 C -0.093 4.093 18 H 0.065 0.935 19 C 0.167 3.833 20 N -0.758 5.758 21 C -0.333 4.333 22 H 0.068 0.932 23 C -0.109 4.109 24 N -0.977 5.977 25 Si 1.129 2.871 26 H -0.294 1.294 27 H -0.276 1.276 28 H -0.277 1.277 29 C -0.105 4.105 30 H 0.057 0.943 31 H 0.075 0.925 32 H 0.044 0.956 33 H 0.096 0.904 34 H 0.043 0.957 35 H 0.075 0.925 36 H 0.057 0.943 37 H 0.094 0.906 38 H 0.123 0.877 39 H 0.093 0.907 40 H 0.227 0.773 41 H 0.411 0.589 42 H 0.060 0.940 43 H 0.069 0.931 44 H 0.065 0.935 45 H 0.044 0.956 46 H 0.019 0.981 47 H 0.025 0.975 48 H 0.360 0.640 49 H 0.243 0.757 50 H 0.082 0.918 51 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.192 17.315 17.689 31.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.056 4.056 3 C -0.190 4.190 4 C -0.041 4.041 5 N -0.143 5.143 6 N -0.136 5.136 7 C -0.053 4.053 8 C -0.032 4.032 9 C -0.337 4.337 10 C 0.383 3.617 11 O -0.462 6.462 12 N -0.359 5.359 13 C 0.047 3.953 14 H 0.097 0.903 15 C -0.162 4.162 16 C -0.144 4.144 17 C -0.112 4.112 18 H 0.084 0.916 19 C 0.040 3.960 20 N -0.402 5.402 21 C -0.465 4.465 22 H 0.086 0.914 23 C -0.300 4.300 24 N -0.625 5.625 25 Si 0.954 3.046 26 H -0.221 1.221 27 H -0.202 1.202 28 H -0.203 1.203 29 C -0.143 4.143 30 H 0.076 0.924 31 H 0.094 0.906 32 H 0.064 0.936 33 H 0.114 0.886 34 H 0.062 0.938 35 H 0.094 0.906 36 H 0.077 0.923 37 H 0.112 0.888 38 H 0.141 0.859 39 H 0.112 0.888 40 H 0.243 0.757 41 H 0.249 0.751 42 H 0.079 0.921 43 H 0.087 0.913 44 H 0.084 0.916 45 H 0.063 0.937 46 H 0.037 0.963 47 H 0.043 0.957 48 H 0.191 0.809 49 H 0.053 0.947 50 H 0.101 0.899 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -19.721 17.433 17.724 31.732 hybrid contribution -0.560 0.324 -0.322 0.723 sum -20.281 17.757 17.402 32.085 Atomic orbital electron populations 1.21711 0.93004 1.01528 1.02676 1.19961 0.96753 0.96097 0.92838 1.21713 1.00376 0.94210 1.02683 1.22538 0.94352 0.93518 0.93727 1.77097 1.21300 1.15647 1.00275 1.48732 1.36632 1.19722 1.08510 1.22409 1.06159 1.05905 0.70803 1.23663 0.94981 0.94831 0.89701 1.20283 1.15469 1.04542 0.93385 1.17504 0.77019 0.79635 0.87587 1.90683 1.60823 1.68003 1.26687 1.45837 1.51587 1.28347 1.10129 1.21428 0.94649 0.90805 0.88375 0.90329 1.22488 0.94419 0.97815 1.01526 1.22253 0.97044 0.93765 1.01359 1.22161 0.95359 0.94218 0.99453 0.91638 1.20740 0.87619 0.94454 0.93139 1.42615 1.31941 1.40732 1.24951 1.20415 1.08525 1.11188 1.06341 0.91426 1.27266 1.00699 1.06394 0.95616 1.70993 1.41598 1.25544 1.24354 0.82616 0.74243 0.72737 0.75047 1.22064 1.20215 1.20311 1.22507 0.96585 0.93819 1.01418 0.92359 0.90628 0.93635 0.88601 0.93794 0.90619 0.92341 0.88777 0.85863 0.88811 0.75680 0.75141 0.92126 0.91252 0.91634 0.93669 0.96348 0.95747 0.80851 0.94652 0.89886 0.88817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.42 9.17 71.98 0.66 -1.76 16 2 C -0.04 -0.79 3.26 -11.54 -0.04 -0.83 16 3 C -0.13 -2.49 9.18 71.98 0.66 -1.82 16 4 C 0.13 2.86 5.77 43.52 0.25 3.11 16 5 N -0.32 -6.68 12.50 -46.68 -0.58 -7.26 16 6 N -0.36 -4.80 3.98 -367.79 -1.46 -6.27 16 7 C 0.09 0.31 11.44 127.77 1.46 1.77 16 8 C 0.12 1.48 10.99 84.28 0.93 2.41 16 9 C -0.32 -6.62 6.13 -20.15 -0.12 -6.74 16 10 C 0.59 14.25 7.81 86.66 0.68 14.93 16 11 O -0.58 -18.41 14.22 -4.04 -0.06 -18.46 16 12 N -0.71 -13.16 4.97 -442.35 -2.20 -15.36 16 13 C 0.15 3.44 3.24 45.72 0.15 3.59 16 14 H 0.08 2.05 7.56 -2.39 -0.02 2.03 16 15 C -0.12 -3.15 6.59 31.32 0.21 -2.94 16 16 C -0.11 -3.16 6.20 31.67 0.20 -2.96 16 17 C -0.09 -2.81 2.91 -9.50 -0.03 -2.84 16 18 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 19 C 0.17 6.44 5.70 86.38 0.49 6.94 16 20 N -0.76 -38.55 5.52 -343.47 -1.90 -40.45 16 21 C -0.33 -18.90 9.99 84.03 0.84 -18.06 16 22 H 0.07 3.70 7.83 -2.91 -0.02 3.68 16 23 C -0.11 -6.39 5.50 84.86 0.47 -5.92 16 24 N -0.98 -62.01 13.70 21.65 0.30 -61.71 16 25 Si 1.13 51.99 29.92 68.60 2.05 54.04 16 26 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 27 H -0.28 -11.71 7.11 99.48 0.71 -11.01 16 28 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 29 C -0.10 -2.27 5.97 31.67 0.19 -2.08 16 30 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 31 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.04 0.90 8.14 -2.38 -0.02 0.88 16 33 H 0.10 2.54 5.60 -2.39 -0.01 2.53 16 34 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.09 0.12 8.14 -2.39 -0.02 0.10 16 38 H 0.12 -0.30 8.14 -2.39 -0.02 -0.32 16 39 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 40 H 0.23 0.47 7.46 -2.91 -0.02 0.44 16 41 H 0.41 4.74 7.28 -92.70 -0.68 4.07 16 42 H 0.06 1.64 8.14 -2.39 -0.02 1.63 16 43 H 0.07 1.71 7.92 -2.39 -0.02 1.69 16 44 H 0.06 1.95 7.93 -2.39 -0.02 1.93 16 45 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 46 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 47 H 0.02 0.93 7.99 -2.39 -0.02 0.91 16 48 H 0.36 19.13 6.50 -92.71 -0.60 18.52 16 49 H 0.24 15.42 6.77 -92.71 -0.63 14.79 16 50 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 51 H 0.09 1.65 7.64 -2.39 -0.02 1.63 16 Total: -1.00 -80.85 410.47 2.93 -77.92 By element: Atomic # 1 Polarization: 30.98 SS G_CDS: -0.21 Total: 30.77 kcal Atomic # 6 Polarization: -20.21 SS G_CDS: 6.99 Total: -13.22 kcal Atomic # 7 Polarization: -125.20 SS G_CDS: -5.85 Total: -131.05 kcal Atomic # 8 Polarization: -18.41 SS G_CDS: -0.06 Total: -18.46 kcal Atomic # 14 Polarization: 51.99 SS G_CDS: 2.05 Total: 54.04 kcal Total: -80.85 2.93 -77.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676970412.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.514 kcal (2) G-P(sol) polarization free energy of solvation -80.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds