Wall clock time and date at job start Tue Mar 31 2020 20:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53001 * 109.47136 * 2 1 4 4 C 1.50701 * 109.47100 * 119.99611 * 2 1 3 5 5 N 1.30505 * 125.65161 * 299.95937 * 4 2 1 6 6 C 1.34122 * 109.25832 * 180.02562 * 5 4 2 7 7 C 1.34674 * 108.01872 * 359.73612 * 6 5 4 8 8 N 1.35039 * 125.65262 * 119.99696 * 4 2 1 9 9 C 1.46507 * 126.39772 * 359.97255 * 8 4 2 10 10 C 1.50697 * 109.47005 * 84.99188 * 9 8 4 11 11 O 1.21283 * 120.00521 * 359.73077 * 10 9 8 12 12 N 1.34784 * 119.99774 * 180.02562 * 10 9 8 13 13 C 1.46931 * 120.62757 * 359.72633 * 12 10 9 14 14 C 1.53186 * 108.77547 * 233.58511 * 13 12 10 15 15 C 1.53042 * 109.31424 * 305.36982 * 14 13 12 16 16 C 1.53042 * 109.54144 * 61.36113 * 15 14 13 17 17 H 1.09001 * 109.49569 * 58.58712 * 16 15 14 18 18 C 1.52992 * 109.49997 * 178.65119 * 16 15 14 19 19 N 1.46498 * 109.47175 * 185.00280 * 18 16 15 20 20 C 1.36945 * 120.00071 * 180.02562 * 19 18 16 21 21 H 1.08002 * 119.99681 * 0.02562 * 20 19 18 22 22 C 1.38805 * 119.99944 * 179.97438 * 20 19 18 23 23 N 1.31622 * 119.99938 * 180.02562 * 22 20 19 24 24 Si 1.86807 * 120.00048 * 359.97438 * 22 20 19 25 25 H 1.48498 * 109.46767 * 89.99908 * 24 22 20 26 26 H 1.48502 * 109.47077 * 209.99758 * 24 22 20 27 27 H 1.48492 * 109.47176 * 329.99723 * 24 22 20 28 28 C 1.46918 * 120.63039 * 179.44612 * 12 10 9 29 29 H 1.09006 * 109.47383 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47637 * 300.00140 * 1 2 3 31 31 H 1.09005 * 109.47006 * 60.00295 * 1 2 3 32 32 H 1.08996 * 109.47556 * 239.99821 * 2 1 3 33 33 H 1.09001 * 109.47428 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.46889 * 299.99581 * 3 2 1 35 35 H 1.08998 * 109.47515 * 59.99740 * 3 2 1 36 36 H 1.07998 * 125.98939 * 180.02562 * 6 5 4 37 37 H 1.08002 * 126.58676 * 180.27939 * 7 6 5 38 38 H 1.09001 * 109.46566 * 324.99984 * 9 8 4 39 39 H 1.08993 * 109.47390 * 204.99774 * 9 8 4 40 40 H 1.08994 * 109.58636 * 353.37407 * 13 12 10 41 41 H 1.09001 * 109.57902 * 113.79870 * 13 12 10 42 42 H 1.08998 * 109.50144 * 65.31586 * 14 13 12 43 43 H 1.08996 * 109.49951 * 185.41700 * 14 13 12 44 44 H 1.08993 * 109.46497 * 181.38716 * 15 14 13 45 45 H 1.09005 * 109.45704 * 301.36063 * 15 14 13 46 46 H 1.08994 * 109.47514 * 305.00511 * 18 16 15 47 47 H 1.09006 * 109.47039 * 65.00667 * 18 16 15 48 48 H 0.96995 * 119.99931 * 359.97438 * 19 18 16 49 49 H 0.97001 * 119.99723 * 180.02562 * 23 22 20 50 50 H 1.08995 * 109.59003 * 246.20126 * 28 12 10 51 51 H 1.08997 * 109.58851 * 6.63324 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0322 -0.7103 1.2305 5 7 1.7865 -0.3614 2.4638 6 6 2.3941 -1.2201 3.2959 7 6 3.0361 -2.1394 2.5499 8 7 2.8118 -1.8129 1.2397 9 6 3.3178 -2.5297 0.0664 10 6 4.5896 -1.8773 -0.4109 11 8 5.0275 -0.9059 0.1686 12 7 5.2374 -2.3696 -1.4854 13 6 4.7191 -3.5453 -2.1981 14 6 5.8308 -4.5951 -2.2913 15 6 7.0688 -3.9656 -2.9342 16 6 7.5670 -2.8105 -2.0624 17 1 7.8006 -3.1822 -1.0647 18 6 8.8241 -2.2035 -2.6885 19 7 9.3684 -1.1783 -1.7948 20 6 10.5004 -0.4931 -2.1478 21 1 10.9915 -0.7083 -3.0853 22 6 11.0158 0.4787 -1.3013 23 7 12.1034 1.1376 -1.6408 24 14 10.1650 0.8524 0.3193 25 1 10.7243 -0.0185 1.3842 26 1 10.3861 2.2765 0.6775 27 1 8.7086 0.5962 0.1844 28 6 6.4718 -1.7371 -1.9700 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 1.8933 -0.5138 -0.8899 33 1 3.1299 1.4426 0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9564 0.8899 36 1 2.3687 -1.1837 4.3750 37 1 3.6182 -2.9725 2.9154 38 1 2.5725 -2.4974 -0.7283 39 1 3.5196 -3.5670 0.3334 40 1 3.8709 -3.9588 -1.6525 41 1 4.4051 -3.2555 -3.2009 42 1 6.0809 -4.9500 -1.2915 43 1 5.4905 -5.4323 -2.9006 44 1 7.8532 -4.7170 -3.0242 45 1 6.8119 -3.5884 -3.9241 46 1 9.5682 -2.9853 -2.8404 47 1 8.5705 -1.7519 -3.6476 48 1 8.9267 -0.9843 -0.9533 49 1 12.4638 1.8164 -1.0491 50 1 6.2978 -1.3030 -2.9545 51 1 6.7804 -0.9573 -1.2738 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690425336.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:31 Heat of formation + Delta-G solvation = 33.650158 kcal Electronic energy + Delta-G solvation = -29980.377802 eV Core-core repulsion = 26108.935005 eV Total energy + Delta-G solvation = -3871.442797 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.35360 -40.32871 -37.88683 -35.53183 -35.24643 -34.20833 -33.06903 -31.88987 -30.39832 -29.05773 -28.30914 -27.30793 -25.86826 -25.25167 -23.06330 -22.99985 -21.63703 -21.33700 -20.64104 -19.69650 -18.92400 -17.92644 -17.54831 -17.23985 -16.07240 -15.78544 -15.24618 -15.03341 -14.77009 -14.71104 -14.44897 -14.16859 -14.06146 -13.80632 -13.58822 -13.48902 -13.28601 -13.16973 -13.02531 -12.75657 -12.54973 -12.49553 -12.29774 -11.77014 -11.68620 -11.50131 -11.36053 -11.33576 -11.15688 -11.00244 -10.77578 -10.59289 -10.46236 -10.32317 -10.08625 -10.03840 -9.57982 -9.53215 -8.92288 -8.80161 -8.43307 -7.23802 -5.76427 -3.12487 1.80594 2.27344 2.39275 2.86101 3.10023 3.42320 3.49324 3.51902 4.01859 4.16069 4.22720 4.39807 4.42136 4.54468 4.61975 4.63385 4.70783 4.84479 4.93399 4.94933 5.05256 5.06356 5.13986 5.34780 5.38041 5.46914 5.50570 5.51330 5.54511 5.60296 5.65557 5.69238 5.71377 5.77849 5.79128 5.88087 5.92118 6.00832 6.15826 6.17115 6.21186 6.23388 6.31715 6.58792 6.66662 6.67796 6.96772 7.14212 7.87836 7.98506 8.02669 8.42471 9.21092 9.93981 10.12572 11.41705 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.010912 B = 0.003529 C = 0.002999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2565.445885 B = 7932.400018 C = 9333.741226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.007 4.007 3 C -0.141 4.141 4 C 0.228 3.772 5 N -0.486 5.486 6 C -0.026 4.026 7 C -0.053 4.053 8 N -0.443 5.443 9 C 0.086 3.914 10 C 0.492 3.508 11 O -0.511 6.511 12 N -0.608 5.608 13 C 0.104 3.896 14 C -0.134 4.134 15 C -0.112 4.112 16 C -0.111 4.111 17 H 0.073 0.927 18 C 0.165 3.835 19 N -0.757 5.757 20 C -0.247 4.247 21 H 0.090 0.910 22 C 0.008 3.992 23 N -0.933 5.933 24 Si 0.879 3.121 25 H -0.285 1.285 26 H -0.290 1.290 27 H -0.274 1.274 28 C 0.119 3.881 29 H 0.052 0.948 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.169 0.831 37 H 0.172 0.828 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.078 0.922 41 H 0.075 0.925 42 H 0.067 0.933 43 H 0.077 0.923 44 H 0.070 0.930 45 H 0.067 0.933 46 H 0.031 0.969 47 H 0.028 0.972 48 H 0.361 0.639 49 H 0.260 0.740 50 H 0.073 0.927 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.546 -13.788 -0.257 29.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.027 4.027 3 C -0.199 4.199 4 C -0.034 4.034 5 N -0.204 5.204 6 C -0.173 4.173 7 C -0.185 4.185 8 N -0.125 5.125 9 C -0.041 4.041 10 C 0.277 3.723 11 O -0.385 6.385 12 N -0.342 5.342 13 C -0.019 4.019 14 C -0.172 4.172 15 C -0.151 4.151 16 C -0.131 4.131 17 H 0.092 0.908 18 C 0.037 3.963 19 N -0.403 5.403 20 C -0.376 4.376 21 H 0.108 0.892 22 C -0.188 4.188 23 N -0.581 5.581 24 Si 0.709 3.291 25 H -0.211 1.211 26 H -0.216 1.216 27 H -0.200 1.200 28 C -0.003 4.003 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.186 0.814 37 H 0.189 0.811 38 H 0.136 0.864 39 H 0.139 0.861 40 H 0.096 0.904 41 H 0.093 0.907 42 H 0.085 0.915 43 H 0.095 0.905 44 H 0.089 0.911 45 H 0.086 0.914 46 H 0.049 0.951 47 H 0.046 0.954 48 H 0.195 0.805 49 H 0.070 0.930 50 H 0.091 0.909 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -25.523 -12.577 0.085 28.454 hybrid contribution 0.307 -0.604 0.992 1.201 sum -25.217 -13.181 1.077 28.474 Atomic orbital electron populations 1.21789 0.93077 1.01924 1.02861 1.19524 0.96360 0.96241 0.90578 1.21771 1.01948 0.93700 1.02446 1.23163 0.96366 0.88210 0.95704 1.70170 1.24616 1.26694 0.98910 1.22221 1.01433 0.94145 0.99520 1.22621 1.08162 1.05132 0.82536 1.44864 1.38559 1.23299 1.05825 1.21715 0.95975 0.97435 0.88975 1.20660 0.85833 0.85034 0.80801 1.90844 1.66595 1.25876 1.55157 1.48192 1.26449 1.30487 1.29112 1.21827 0.96607 0.85880 0.97630 1.21918 0.95812 0.97514 1.01982 1.21515 0.96978 0.97626 0.98934 1.21828 0.95584 0.95254 1.00388 0.90846 1.20611 0.91199 0.91249 0.93231 1.42772 1.31593 1.44294 1.21642 1.19029 1.00340 1.13635 1.04631 0.89185 1.24647 0.97332 0.98558 0.98290 1.69701 1.22874 1.27665 1.37875 0.86628 0.79674 0.77685 0.85087 1.21118 1.21592 1.19965 1.21880 0.81810 0.95953 1.00635 0.92922 0.91236 0.91822 0.90790 0.92032 0.91966 0.91404 0.81368 0.81109 0.86357 0.86111 0.90381 0.90651 0.91473 0.90483 0.91125 0.91415 0.95090 0.95373 0.80546 0.93027 0.90905 0.88405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 9.17 37.15 0.34 -0.82 16 2 C -0.01 -0.07 3.25 -91.78 -0.30 -0.37 16 3 C -0.14 -1.62 9.18 37.16 0.34 -1.28 16 4 C 0.23 2.96 6.40 -155.41 -0.99 1.97 16 5 N -0.49 -7.09 11.25 -10.82 -0.12 -7.21 16 6 C -0.03 -0.33 11.87 -17.81 -0.21 -0.54 16 7 C -0.05 -0.61 11.58 -16.56 -0.19 -0.80 16 8 N -0.44 -5.18 2.24 -115.18 -0.26 -5.44 16 9 C 0.09 0.73 4.52 -5.19 -0.02 0.71 16 10 C 0.49 6.29 7.77 -10.98 -0.09 6.20 16 11 O -0.51 -9.42 15.83 5.56 0.09 -9.34 16 12 N -0.61 -6.80 2.97 -172.51 -0.51 -7.31 16 13 C 0.10 0.69 6.34 -3.71 -0.02 0.66 16 14 C -0.13 -0.94 6.08 -26.61 -0.16 -1.11 16 15 C -0.11 -1.11 5.16 -26.69 -0.14 -1.25 16 16 C -0.11 -1.57 2.38 -90.28 -0.22 -1.78 16 17 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 18 C 0.16 3.04 5.65 -4.05 -0.02 3.02 16 19 N -0.76 -18.19 5.18 -59.91 -0.31 -18.50 16 20 C -0.25 -7.09 10.47 -15.06 -0.16 -7.25 16 21 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 22 C 0.01 0.23 5.50 -17.43 -0.10 0.14 16 23 N -0.93 -29.91 13.97 55.49 0.78 -29.14 16 24 Si 0.88 23.37 27.74 -169.99 -4.71 18.66 16 25 H -0.28 -7.50 7.11 56.52 0.40 -7.10 16 26 H -0.29 -7.78 7.11 56.52 0.40 -7.38 16 27 H -0.27 -7.13 6.52 56.52 0.37 -6.76 16 28 C 0.12 1.73 5.55 -3.49 -0.02 1.71 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.68 6.85 -51.93 -0.36 0.32 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.17 1.72 8.06 -52.49 -0.42 1.30 16 37 H 0.17 1.48 8.06 -52.49 -0.42 1.06 16 38 H 0.12 0.66 7.10 -51.93 -0.37 0.29 16 39 H 0.12 0.67 7.67 -51.93 -0.40 0.27 16 40 H 0.08 0.30 5.94 -51.93 -0.31 -0.01 16 41 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 46 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.36 8.77 4.78 -40.82 -0.20 8.57 16 49 H 0.26 7.94 8.31 -40.82 -0.34 7.60 16 50 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 51 H 0.10 1.85 6.23 -51.93 -0.32 1.53 16 LS Contribution 403.96 15.07 6.09 6.09 Total: -1.00 -38.00 403.96 -9.65 -47.65 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -8.73 Total: 5.32 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: -1.96 Total: -0.79 kcal Atomic # 7 Polarization: -67.17 SS G_CDS: -0.43 Total: -67.60 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: 0.09 Total: -9.34 kcal Atomic # 14 Polarization: 23.37 SS G_CDS: -4.71 Total: 18.66 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -38.00 -9.65 -47.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690425336.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.303 kcal (2) G-P(sol) polarization free energy of solvation -38.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds