Wall clock time and date at job start Tue Mar 31 2020 20:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53001 * 109.47136 * 2 1 4 4 C 1.50701 * 109.47100 * 119.99611 * 2 1 3 5 5 N 1.30505 * 125.65161 * 299.95937 * 4 2 1 6 6 C 1.34122 * 109.25832 * 180.02562 * 5 4 2 7 7 C 1.34674 * 108.01872 * 359.73612 * 6 5 4 8 8 N 1.35039 * 125.65262 * 119.99696 * 4 2 1 9 9 C 1.46507 * 126.39772 * 359.97255 * 8 4 2 10 10 C 1.50697 * 109.47005 * 84.99188 * 9 8 4 11 11 O 1.21283 * 120.00521 * 359.73077 * 10 9 8 12 12 N 1.34784 * 119.99774 * 180.02562 * 10 9 8 13 13 C 1.46931 * 120.62757 * 359.72633 * 12 10 9 14 14 C 1.53186 * 108.77547 * 233.58511 * 13 12 10 15 15 C 1.53042 * 109.31424 * 305.36982 * 14 13 12 16 16 C 1.53042 * 109.54144 * 61.36113 * 15 14 13 17 17 H 1.09001 * 109.49569 * 58.58712 * 16 15 14 18 18 C 1.52992 * 109.49997 * 178.65119 * 16 15 14 19 19 N 1.46498 * 109.47175 * 185.00280 * 18 16 15 20 20 C 1.36945 * 120.00071 * 180.02562 * 19 18 16 21 21 H 1.08002 * 119.99681 * 0.02562 * 20 19 18 22 22 C 1.38805 * 119.99944 * 179.97438 * 20 19 18 23 23 N 1.31622 * 119.99938 * 180.02562 * 22 20 19 24 24 Si 1.86807 * 120.00048 * 359.97438 * 22 20 19 25 25 H 1.48498 * 109.46767 * 89.99908 * 24 22 20 26 26 H 1.48502 * 109.47077 * 209.99758 * 24 22 20 27 27 H 1.48492 * 109.47176 * 329.99723 * 24 22 20 28 28 C 1.46918 * 120.63039 * 179.44612 * 12 10 9 29 29 H 1.09006 * 109.47383 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47637 * 300.00140 * 1 2 3 31 31 H 1.09005 * 109.47006 * 60.00295 * 1 2 3 32 32 H 1.08996 * 109.47556 * 239.99821 * 2 1 3 33 33 H 1.09001 * 109.47428 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.46889 * 299.99581 * 3 2 1 35 35 H 1.08998 * 109.47515 * 59.99740 * 3 2 1 36 36 H 1.07998 * 125.98939 * 180.02562 * 6 5 4 37 37 H 1.08002 * 126.58676 * 180.27939 * 7 6 5 38 38 H 1.09001 * 109.46566 * 324.99984 * 9 8 4 39 39 H 1.08993 * 109.47390 * 204.99774 * 9 8 4 40 40 H 1.08994 * 109.58636 * 353.37407 * 13 12 10 41 41 H 1.09001 * 109.57902 * 113.79870 * 13 12 10 42 42 H 1.08998 * 109.50144 * 65.31586 * 14 13 12 43 43 H 1.08996 * 109.49951 * 185.41700 * 14 13 12 44 44 H 1.08993 * 109.46497 * 181.38716 * 15 14 13 45 45 H 1.09005 * 109.45704 * 301.36063 * 15 14 13 46 46 H 1.08994 * 109.47514 * 305.00511 * 18 16 15 47 47 H 1.09006 * 109.47039 * 65.00667 * 18 16 15 48 48 H 0.96995 * 119.99931 * 359.97438 * 19 18 16 49 49 H 0.97001 * 119.99723 * 180.02562 * 23 22 20 50 50 H 1.08995 * 109.59003 * 246.20126 * 28 12 10 51 51 H 1.08997 * 109.58851 * 6.63324 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0322 -0.7103 1.2305 5 7 1.7865 -0.3614 2.4638 6 6 2.3941 -1.2201 3.2959 7 6 3.0361 -2.1394 2.5499 8 7 2.8118 -1.8129 1.2397 9 6 3.3178 -2.5297 0.0664 10 6 4.5896 -1.8773 -0.4109 11 8 5.0275 -0.9059 0.1686 12 7 5.2374 -2.3696 -1.4854 13 6 4.7191 -3.5453 -2.1981 14 6 5.8308 -4.5951 -2.2913 15 6 7.0688 -3.9656 -2.9342 16 6 7.5670 -2.8105 -2.0624 17 1 7.8006 -3.1822 -1.0647 18 6 8.8241 -2.2035 -2.6885 19 7 9.3684 -1.1783 -1.7948 20 6 10.5004 -0.4931 -2.1478 21 1 10.9915 -0.7083 -3.0853 22 6 11.0158 0.4787 -1.3013 23 7 12.1034 1.1376 -1.6408 24 14 10.1650 0.8524 0.3193 25 1 10.7243 -0.0185 1.3842 26 1 10.3861 2.2765 0.6775 27 1 8.7086 0.5962 0.1844 28 6 6.4718 -1.7371 -1.9700 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 1.8933 -0.5138 -0.8899 33 1 3.1299 1.4426 0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9564 0.8899 36 1 2.3687 -1.1837 4.3750 37 1 3.6182 -2.9725 2.9154 38 1 2.5725 -2.4974 -0.7283 39 1 3.5196 -3.5670 0.3334 40 1 3.8709 -3.9588 -1.6525 41 1 4.4051 -3.2555 -3.2009 42 1 6.0809 -4.9500 -1.2915 43 1 5.4905 -5.4323 -2.9006 44 1 7.8532 -4.7170 -3.0242 45 1 6.8119 -3.5884 -3.9241 46 1 9.5682 -2.9853 -2.8404 47 1 8.5705 -1.7519 -3.6476 48 1 8.9267 -0.9843 -0.9533 49 1 12.4638 1.8164 -1.0491 50 1 6.2978 -1.3030 -2.9545 51 1 6.7804 -0.9573 -1.2738 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690425336.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:30 Heat of formation + Delta-G solvation = 8.165445 kcal Electronic energy + Delta-G solvation = -29981.482902 eV Core-core repulsion = 26108.935005 eV Total energy + Delta-G solvation = -3872.547897 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -43.20690 -41.26485 -38.95754 -36.81491 -36.32120 -35.15321 -34.44879 -33.30088 -31.91192 -29.94133 -29.23153 -28.08810 -27.28789 -26.16217 -24.58398 -23.85035 -22.68901 -22.45132 -21.75636 -20.61425 -19.77593 -19.69339 -18.61336 -18.16923 -16.97495 -16.74680 -16.69825 -16.20444 -15.88727 -15.82781 -15.54198 -15.28234 -15.14282 -14.87154 -14.65713 -14.43673 -14.30790 -14.21558 -14.15151 -13.89779 -13.82279 -13.43400 -13.32072 -13.05998 -13.05012 -12.75016 -12.44752 -12.31738 -12.17290 -12.06733 -11.95589 -11.94537 -11.86571 -11.63658 -11.42248 -11.33753 -11.07971 -10.95856 -10.46538 -9.74497 -9.36139 -9.30994 -8.11686 -5.43005 0.92960 1.26404 1.31093 1.36025 1.37905 1.63211 2.02603 2.17978 2.37122 3.20649 3.27965 3.37335 3.50880 3.64846 3.70655 3.81378 3.83910 3.96621 4.00249 4.07858 4.10239 4.15548 4.27311 4.30369 4.39241 4.55162 4.59429 4.68876 4.71944 4.74468 4.77239 4.84281 4.84996 4.88969 4.92638 4.99696 5.01648 5.10376 5.20409 5.22673 5.28475 5.30922 5.38936 5.43090 5.48978 5.69084 5.82255 6.12330 6.13991 6.31654 6.98479 6.99878 7.13754 7.77729 7.93296 9.10022 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.010912 B = 0.003529 C = 0.002999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2565.445885 B = 7932.400018 C = 9333.741226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.008 4.008 3 C -0.136 4.136 4 C 0.213 3.787 5 N -0.524 5.524 6 C -0.056 4.056 7 C -0.051 4.051 8 N -0.447 5.447 9 C 0.089 3.911 10 C 0.486 3.514 11 O -0.581 6.581 12 N -0.601 5.601 13 C 0.095 3.905 14 C -0.128 4.128 15 C -0.109 4.109 16 C -0.097 4.097 17 H 0.058 0.942 18 C 0.158 3.842 19 N -0.763 5.763 20 C -0.229 4.229 21 H 0.066 0.934 22 C -0.054 4.054 23 N -0.978 5.978 24 Si 0.942 3.058 25 H -0.277 1.277 26 H -0.293 1.293 27 H -0.272 1.272 28 C 0.123 3.877 29 H 0.064 0.936 30 H 0.051 0.949 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.025 0.975 34 H 0.085 0.915 35 H 0.053 0.947 36 H 0.181 0.819 37 H 0.200 0.800 38 H 0.158 0.842 39 H 0.162 0.838 40 H 0.120 0.880 41 H 0.095 0.905 42 H 0.063 0.937 43 H 0.112 0.888 44 H 0.073 0.927 45 H 0.078 0.922 46 H 0.033 0.967 47 H 0.031 0.969 48 H 0.360 0.640 49 H 0.259 0.741 50 H 0.077 0.923 51 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.680 -17.241 -1.324 33.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.028 4.028 3 C -0.194 4.194 4 C -0.050 4.050 5 N -0.243 5.243 6 C -0.203 4.203 7 C -0.183 4.183 8 N -0.129 5.129 9 C -0.036 4.036 10 C 0.273 3.727 11 O -0.460 6.460 12 N -0.333 5.333 13 C -0.026 4.026 14 C -0.166 4.166 15 C -0.147 4.147 16 C -0.117 4.117 17 H 0.077 0.923 18 C 0.032 3.968 19 N -0.408 5.408 20 C -0.361 4.361 21 H 0.084 0.916 22 C -0.246 4.246 23 N -0.629 5.629 24 Si 0.771 3.229 25 H -0.204 1.204 26 H -0.220 1.220 27 H -0.198 1.198 28 C 0.000 4.000 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.103 0.897 32 H 0.110 0.890 33 H 0.044 0.956 34 H 0.104 0.896 35 H 0.072 0.928 36 H 0.198 0.802 37 H 0.217 0.783 38 H 0.175 0.825 39 H 0.180 0.820 40 H 0.138 0.862 41 H 0.113 0.887 42 H 0.082 0.918 43 H 0.131 0.869 44 H 0.092 0.908 45 H 0.097 0.903 46 H 0.051 0.949 47 H 0.049 0.951 48 H 0.193 0.807 49 H 0.068 0.932 50 H 0.095 0.905 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -28.704 -16.120 -1.024 32.936 hybrid contribution 1.330 0.421 1.207 1.845 sum -27.373 -15.699 0.183 31.556 Atomic orbital electron populations 1.21725 0.91300 1.02746 1.03004 1.19659 0.97741 0.95001 0.90383 1.21715 0.99484 0.95288 1.02910 1.23595 0.96625 0.88807 0.95927 1.70110 1.26089 1.27890 1.00165 1.22631 1.02410 0.94779 1.00464 1.23104 1.07302 1.05311 0.82615 1.45061 1.37981 1.23144 1.06690 1.22070 0.94298 0.98231 0.89010 1.21475 0.86765 0.84189 0.80221 1.90829 1.68643 1.29102 1.57403 1.48252 1.24884 1.31329 1.28870 1.22291 0.97575 0.83848 0.98848 1.21920 0.94206 0.98293 1.02152 1.21525 0.98687 0.95806 0.98652 1.21683 0.93375 0.96428 1.00218 0.92304 1.20876 0.93241 0.89946 0.92742 1.42887 1.30395 1.45057 1.22486 1.19091 1.00896 1.12886 1.03177 0.91582 1.25300 0.98343 0.99286 1.01652 1.69837 1.24772 1.28968 1.39333 0.85616 0.78613 0.77154 0.81521 1.20352 1.21953 1.19785 1.21537 0.83859 0.95206 0.99422 0.91731 0.93012 0.89715 0.88951 0.95620 0.89605 0.92819 0.80194 0.78333 0.82497 0.82015 0.86238 0.88713 0.91833 0.86930 0.90784 0.90338 0.94891 0.95054 0.80698 0.93232 0.90513 0.93479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.90 9.17 71.98 0.66 -1.24 16 2 C -0.01 -0.15 3.25 -11.54 -0.04 -0.19 16 3 C -0.14 -3.17 9.18 71.98 0.66 -2.51 16 4 C 0.21 5.35 6.40 138.13 0.88 6.23 16 5 N -0.52 -15.44 11.25 -188.13 -2.12 -17.55 16 6 C -0.06 -1.44 11.87 83.53 0.99 -0.45 16 7 C -0.05 -1.10 11.58 83.09 0.96 -0.14 16 8 N -0.45 -9.46 2.24 -518.33 -1.16 -10.63 16 9 C 0.09 1.14 4.52 85.63 0.39 1.53 16 10 C 0.49 11.41 7.77 87.65 0.68 12.09 16 11 O -0.58 -21.76 15.83 -3.04 -0.05 -21.81 16 12 N -0.60 -11.75 2.97 -818.08 -2.43 -14.17 16 13 C 0.09 0.73 6.34 86.36 0.55 1.27 16 14 C -0.13 -1.11 6.08 30.67 0.19 -0.92 16 15 C -0.11 -1.76 5.16 30.62 0.16 -1.60 16 16 C -0.10 -2.62 2.38 -10.57 -0.03 -2.65 16 17 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 18 C 0.16 5.80 5.65 86.38 0.49 6.29 16 19 N -0.76 -37.22 5.18 -343.47 -1.78 -39.00 16 20 C -0.23 -13.52 10.47 84.03 0.88 -12.64 16 21 H 0.07 4.15 8.06 -2.91 -0.02 4.13 16 22 C -0.05 -3.32 5.50 84.86 0.47 -2.85 16 23 N -0.98 -64.54 13.97 21.65 0.30 -64.24 16 24 Si 0.94 50.00 27.74 68.60 1.90 51.90 16 25 H -0.28 -14.27 7.11 99.48 0.71 -13.57 16 26 H -0.29 -15.60 7.11 99.48 0.71 -14.90 16 27 H -0.27 -14.21 6.52 99.48 0.65 -13.57 16 28 C 0.12 3.50 5.55 86.51 0.48 3.98 16 29 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 30 H 0.05 0.94 8.14 -2.38 -0.02 0.93 16 31 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 32 H 0.09 1.42 6.85 -2.39 -0.02 1.40 16 33 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.18 3.75 8.06 -2.91 -0.02 3.73 16 37 H 0.20 2.89 8.06 -2.91 -0.02 2.87 16 38 H 0.16 0.81 7.10 -2.39 -0.02 0.79 16 39 H 0.16 0.77 7.67 -2.39 -0.02 0.75 16 40 H 0.12 0.00 5.94 -2.39 -0.01 -0.02 16 41 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 42 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 43 H 0.11 0.33 8.14 -2.39 -0.02 0.31 16 44 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.08 1.13 8.14 -2.38 -0.02 1.12 16 46 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 47 H 0.03 1.14 8.14 -2.38 -0.02 1.13 16 48 H 0.36 17.79 4.78 -92.71 -0.44 17.35 16 49 H 0.26 16.30 8.31 -92.71 -0.77 15.53 16 50 H 0.08 2.07 8.14 -2.39 -0.02 2.06 16 51 H 0.05 1.84 6.23 -2.39 -0.01 1.83 16 Total: -1.00 -90.48 403.96 3.45 -87.03 By element: Atomic # 1 Polarization: 21.85 SS G_CDS: 0.41 Total: 22.26 kcal Atomic # 6 Polarization: -2.16 SS G_CDS: 8.37 Total: 6.21 kcal Atomic # 7 Polarization: -138.41 SS G_CDS: -7.18 Total: -145.59 kcal Atomic # 8 Polarization: -21.76 SS G_CDS: -0.05 Total: -21.81 kcal Atomic # 14 Polarization: 50.00 SS G_CDS: 1.90 Total: 51.90 kcal Total: -90.48 3.45 -87.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690425336.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.197 kcal (2) G-P(sol) polarization free energy of solvation -90.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds