Wall clock time and date at job start Tue Mar 31 2020 19:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47152 * 2 1 4 4 C 1.50702 * 109.47091 * 119.99352 * 2 1 3 5 5 C 1.35371 * 126.38401 * 324.69561 * 4 2 1 6 6 C 1.41503 * 105.49870 * 179.86007 * 5 4 2 7 7 C 1.47715 * 126.51802 * 180.12394 * 6 5 4 8 8 O 1.21573 * 119.99828 * 353.67978 * 7 6 5 9 9 N 1.34768 * 120.00407 * 173.67728 * 7 6 5 10 10 C 1.46924 * 120.62869 * 3.75154 * 9 7 6 11 11 C 1.52765 * 109.00973 * 233.58584 * 10 9 7 12 12 C 1.53040 * 109.38045 * 305.58537 * 11 10 9 13 13 C 1.53043 * 109.53790 * 61.24067 * 12 11 10 14 14 C 1.46922 * 120.63454 * 184.03289 * 9 7 6 15 15 H 1.09001 * 109.58798 * 246.15684 * 14 9 7 16 16 C 1.52998 * 109.58724 * 6.57971 * 14 9 7 17 17 N 1.46504 * 109.47414 * 287.63953 * 16 14 9 18 18 C 1.36934 * 120.00309 * 175.41199 * 17 16 14 19 19 H 1.07996 * 119.99756 * 359.97438 * 18 17 16 20 20 C 1.38813 * 119.99837 * 180.02562 * 18 17 16 21 21 N 1.31618 * 120.00186 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99931 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46952 * 359.97438 * 22 20 18 24 24 H 1.48493 * 109.47220 * 119.99530 * 22 20 18 25 25 H 1.48499 * 109.46634 * 239.99805 * 22 20 18 26 26 N 1.31808 * 106.96637 * 0.40253 * 6 5 4 27 27 N 1.28465 * 110.07262 * 359.74312 * 26 6 5 28 28 C 1.46499 * 124.88473 * 180.02562 * 27 26 6 29 29 H 1.08996 * 109.47718 * 300.00324 * 1 2 3 30 30 H 1.09000 * 109.46850 * 60.00637 * 1 2 3 31 31 H 1.09007 * 109.47146 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47285 * 239.99546 * 2 1 3 33 33 H 1.08996 * 109.47074 * 59.99281 * 3 2 1 34 34 H 1.08995 * 109.47286 * 180.02562 * 3 2 1 35 35 H 1.08999 * 109.46744 * 299.99998 * 3 2 1 36 36 H 1.07997 * 127.25259 * 359.95787 * 5 4 2 37 37 H 1.09002 * 109.59096 * 353.42023 * 10 9 7 38 38 H 1.08998 * 109.58683 * 113.84237 * 10 9 7 39 39 H 1.08997 * 109.56324 * 185.55394 * 11 10 9 40 40 H 1.08993 * 109.36025 * 65.49856 * 11 10 9 41 41 H 1.08996 * 109.46298 * 301.21927 * 12 11 10 42 42 H 1.09001 * 109.44633 * 181.25174 * 12 11 10 43 43 H 1.08997 * 109.49789 * 178.67964 * 13 12 11 44 44 H 1.09004 * 109.52371 * 58.59860 * 13 12 11 45 45 H 1.09007 * 109.46990 * 47.63529 * 16 14 9 46 46 H 1.08993 * 109.47505 * 167.63613 * 16 14 9 47 47 H 0.97004 * 119.99067 * 355.40613 * 17 16 14 48 48 H 0.97003 * 120.00153 * 180.02562 * 21 20 18 49 49 H 1.08995 * 109.47259 * 269.95885 * 28 27 26 50 50 H 1.08998 * 109.46915 * 29.96429 * 28 27 26 51 51 H 1.09007 * 109.47032 * 149.96073 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2306 5 6 1.4615 -0.6915 2.4579 6 6 2.2885 -1.5011 3.2720 7 6 2.0889 -1.8007 4.7046 8 8 1.2043 -1.2430 5.3247 9 7 2.8873 -2.6921 5.3243 10 6 4.0116 -3.3129 4.6107 11 6 3.8978 -4.8318 4.7281 12 6 3.7986 -5.2209 6.2049 13 6 2.5446 -4.5921 6.8167 14 6 2.6464 -3.0663 6.7245 15 1 3.4730 -2.7172 7.3435 16 6 1.3388 -2.4350 7.2065 17 7 1.5284 -0.9930 7.3825 18 6 0.4651 -0.1986 7.7195 19 1 -0.5133 -0.6351 7.8551 20 6 0.6448 1.1677 7.8858 21 7 1.8372 1.6997 7.7200 22 14 -0.8058 2.2515 8.3448 23 1 -2.0272 1.4164 8.4708 24 1 -0.5305 2.9250 9.6392 25 1 -1.0129 3.2746 7.2886 26 7 3.2741 -1.9323 2.5105 27 7 3.1389 -1.4795 1.3159 28 6 4.0534 -1.7579 0.2058 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.6766 1.9563 0.8899 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9563 -0.8900 36 1 0.5631 -0.1698 2.7531 37 1 3.9806 -3.0258 3.5596 38 1 4.9518 -2.9843 5.0536 39 1 4.7784 -5.2989 4.2872 40 1 3.0047 -5.1689 4.2022 41 1 4.6806 -4.8618 6.7352 42 1 3.7397 -6.3059 6.2911 43 1 2.4620 -4.8887 7.8623 44 1 1.6638 -4.9314 6.2716 45 1 0.5565 -2.6110 6.4680 46 1 1.0482 -2.8819 8.1571 47 1 2.4073 -0.6010 7.2604 48 1 1.9629 2.6545 7.8366 49 1 4.8358 -0.9995 0.1806 50 1 4.5042 -2.7406 0.3442 51 1 3.5004 -1.7409 -0.7335 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690468626.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:12 Heat of formation + Delta-G solvation = 75.532259 kcal Electronic energy + Delta-G solvation = -30895.208692 eV Core-core repulsion = 27025.582039 eV Total energy + Delta-G solvation = -3869.626653 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -43.70956 -41.18323 -38.11155 -36.80033 -36.31362 -34.52548 -33.60645 -33.49428 -31.53739 -30.58118 -28.47037 -28.05776 -27.50538 -25.87421 -24.47383 -24.32063 -23.34380 -22.46104 -21.47754 -20.85773 -19.81835 -18.85045 -18.02443 -17.42199 -17.22951 -16.77138 -16.65288 -15.84526 -15.62593 -15.41043 -15.27446 -15.12470 -14.91480 -14.77248 -14.70254 -14.43326 -14.04603 -13.97199 -13.67854 -13.55645 -13.41219 -13.33349 -13.15596 -13.03252 -12.81859 -12.76703 -12.57331 -12.22302 -12.10928 -12.09859 -11.92992 -11.79855 -11.78005 -11.70366 -11.36732 -10.85875 -10.74814 -10.14876 -9.92598 -9.88576 -9.37409 -8.59339 -7.80663 -4.99358 0.67107 1.18302 1.42275 1.45806 1.54981 1.59036 2.21759 2.61558 2.64549 3.33965 3.52264 3.54373 3.74054 3.85658 3.90945 4.04524 4.13587 4.17465 4.19132 4.33456 4.35923 4.41302 4.45069 4.49959 4.54312 4.62973 4.67390 4.70527 4.73179 4.78951 4.88149 4.93282 4.95915 4.99620 5.02321 5.09304 5.11460 5.12688 5.15021 5.23556 5.28651 5.34423 5.41539 5.48834 5.50972 5.54936 5.86514 6.07650 6.39728 6.64277 7.00023 7.45081 7.57815 8.23810 8.48007 9.45119 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.008097 B = 0.005230 C = 0.003423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3457.274125 B = 5352.263910 C = 8178.154644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.016 4.016 3 C -0.143 4.143 4 C 0.036 3.964 5 C -0.210 4.210 6 C -0.025 4.025 7 C 0.548 3.452 8 O -0.493 6.493 9 N -0.600 5.600 10 C 0.071 3.929 11 C -0.121 4.121 12 C -0.113 4.113 13 C -0.118 4.118 14 C 0.145 3.855 15 H 0.058 0.942 16 C 0.164 3.836 17 N -0.702 5.702 18 C -0.194 4.194 19 H 0.061 0.939 20 C -0.090 4.090 21 N -0.979 5.979 22 Si 0.966 3.034 23 H -0.271 1.271 24 H -0.292 1.292 25 H -0.300 1.300 26 N -0.268 5.268 27 N -0.280 5.280 28 C 0.071 3.929 29 H 0.040 0.960 30 H 0.088 0.912 31 H 0.056 0.944 32 H 0.117 0.883 33 H 0.035 0.965 34 H 0.058 0.942 35 H 0.089 0.911 36 H 0.133 0.867 37 H 0.137 0.863 38 H 0.054 0.946 39 H 0.097 0.903 40 H 0.055 0.945 41 H 0.066 0.934 42 H 0.087 0.913 43 H 0.086 0.914 44 H 0.060 0.940 45 H 0.021 0.979 46 H 0.017 0.983 47 H 0.364 0.636 48 H 0.243 0.757 49 H 0.098 0.902 50 H 0.109 0.891 51 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.431 -13.647 -22.312 27.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.036 4.036 3 C -0.201 4.201 4 C -0.090 4.090 5 C -0.238 4.238 6 C -0.183 4.183 7 C 0.333 3.667 8 O -0.363 6.363 9 N -0.336 5.336 10 C -0.051 4.051 11 C -0.159 4.159 12 C -0.150 4.150 13 C -0.156 4.156 14 C 0.042 3.958 15 H 0.076 0.924 16 C 0.038 3.962 17 N -0.341 5.341 18 C -0.327 4.327 19 H 0.079 0.921 20 C -0.280 4.280 21 N -0.633 5.633 22 Si 0.797 3.203 23 H -0.195 1.195 24 H -0.219 1.219 25 H -0.228 1.228 26 N -0.104 5.104 27 N -0.067 5.067 28 C -0.068 4.068 29 H 0.059 0.941 30 H 0.107 0.893 31 H 0.075 0.925 32 H 0.135 0.865 33 H 0.054 0.946 34 H 0.077 0.923 35 H 0.108 0.892 36 H 0.151 0.849 37 H 0.154 0.846 38 H 0.073 0.927 39 H 0.116 0.884 40 H 0.073 0.927 41 H 0.085 0.915 42 H 0.106 0.894 43 H 0.104 0.896 44 H 0.079 0.921 45 H 0.039 0.961 46 H 0.035 0.965 47 H 0.195 0.805 48 H 0.051 0.949 49 H 0.116 0.884 50 H 0.128 0.872 51 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 7.787 -14.020 -22.003 27.227 hybrid contribution -1.191 1.757 0.810 2.272 sum 6.596 -12.263 -21.193 25.358 Atomic orbital electron populations 1.21838 0.93241 1.02363 1.02741 1.19838 0.96627 0.95402 0.91755 1.21851 1.01266 0.94370 1.02617 1.21671 0.90243 0.99161 0.97890 1.21443 1.03704 1.05658 0.93000 1.22100 0.96701 1.04452 0.95040 1.17737 0.84115 0.80274 0.84614 1.91287 1.33216 1.49172 1.62604 1.47800 1.30825 1.42977 1.12001 1.22698 0.87219 0.93896 1.01327 1.21763 1.02829 0.94261 0.97081 1.21517 0.96835 1.01186 0.95495 1.21859 0.99650 0.91699 1.02438 1.21415 0.96949 0.95996 0.81486 0.92356 1.20896 0.95309 0.84283 0.95727 1.42290 1.07867 1.02553 1.81430 1.19452 0.90025 0.89884 1.33357 0.92148 1.25357 0.99032 0.97863 1.05706 1.69847 1.22606 1.10372 1.60473 0.85125 0.79533 0.78888 0.76731 1.19524 1.21900 1.22767 1.72970 1.22798 1.22202 0.92448 1.45980 1.19241 1.33361 1.08070 1.22651 0.93080 1.05364 0.85656 0.94080 0.89287 0.92509 0.86499 0.94616 0.92286 0.89170 0.84895 0.84641 0.92722 0.88418 0.92661 0.91486 0.89433 0.89565 0.92128 0.96109 0.96531 0.80482 0.94866 0.88375 0.87220 0.85706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 8.79 71.98 0.63 -1.86 16 2 C -0.02 -0.27 3.10 -11.54 -0.04 -0.31 16 3 C -0.14 -2.36 9.18 71.98 0.66 -1.70 16 4 C 0.04 0.93 5.84 41.40 0.24 1.17 16 5 C -0.21 -7.69 9.97 22.41 0.22 -7.47 16 6 C -0.02 -0.98 6.90 42.46 0.29 -0.69 16 7 C 0.55 25.17 7.43 86.75 0.64 25.81 16 8 O -0.49 -27.62 10.30 -3.95 -0.04 -27.66 16 9 N -0.60 -23.02 2.98 -799.39 -2.38 -25.40 16 10 C 0.07 2.07 6.28 86.22 0.54 2.61 16 11 C -0.12 -2.62 6.07 30.53 0.19 -2.44 16 12 C -0.11 -2.38 5.89 30.62 0.18 -2.20 16 13 C -0.12 -3.27 5.34 30.67 0.16 -3.10 16 14 C 0.14 5.53 2.91 44.97 0.13 5.66 16 15 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 16 C 0.16 7.91 4.89 86.38 0.42 8.33 16 17 N -0.70 -41.48 3.26 -343.45 -1.12 -42.60 16 18 C -0.19 -12.45 9.17 84.03 0.77 -11.68 16 19 H 0.06 3.82 7.83 -2.91 -0.02 3.79 16 20 C -0.09 -5.81 5.50 84.86 0.47 -5.35 16 21 N -0.98 -67.15 13.06 21.65 0.28 -66.87 16 22 Si 0.97 52.15 29.55 68.60 2.03 54.18 16 23 H -0.27 -13.83 7.11 99.48 0.71 -13.12 16 24 H -0.29 -15.35 7.11 99.48 0.71 -14.64 16 25 H -0.30 -16.20 7.11 99.48 0.71 -15.49 16 26 N -0.27 -8.24 8.31 -48.17 -0.40 -8.64 16 27 N -0.28 -6.47 3.70 -355.92 -1.32 -7.79 16 28 C 0.07 0.69 11.11 127.77 1.42 2.11 16 29 H 0.04 0.92 7.36 -2.39 -0.02 0.90 16 30 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 32 H 0.12 1.04 6.86 -2.39 -0.02 1.02 16 33 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.13 5.40 7.48 -2.91 -0.02 5.37 16 37 H 0.14 3.95 3.72 -85.71 -0.32 3.63 16 38 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 44 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 45 H 0.02 1.10 6.39 -2.38 -0.02 1.09 16 46 H 0.02 0.79 8.10 -2.39 -0.02 0.77 16 47 H 0.36 23.22 7.60 -92.71 -0.70 22.52 16 48 H 0.24 16.08 8.31 -92.71 -0.77 15.31 16 49 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 50 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 51 H 0.12 0.42 6.88 -2.38 -0.02 0.40 16 Total: -1.00 -88.77 393.48 3.90 -84.87 By element: Atomic # 1 Polarization: 31.10 SS G_CDS: -0.09 Total: 31.01 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: 6.94 Total: 8.90 kcal Atomic # 7 Polarization: -146.37 SS G_CDS: -4.93 Total: -151.30 kcal Atomic # 8 Polarization: -27.62 SS G_CDS: -0.04 Total: -27.66 kcal Atomic # 14 Polarization: 52.15 SS G_CDS: 2.03 Total: 54.18 kcal Total: -88.77 3.90 -84.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690468626.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.398 kcal (2) G-P(sol) polarization free energy of solvation -88.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds