Wall clock time and date at job start Tue Mar 31 2020 20:24:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.46658 * 2 1 4 4 C 1.52999 * 109.47201 * 239.99745 * 2 1 3 5 5 C 1.50704 * 109.46809 * 119.99743 * 2 1 3 6 6 N 1.30448 * 125.98882 * 248.18384 * 5 2 1 7 7 N 1.39937 * 108.89869 * 180.23111 * 6 5 2 8 8 H 0.96990 * 125.75396 * 179.77408 * 7 6 5 9 9 C 1.34262 * 108.48799 * 359.75459 * 7 6 5 10 10 C 1.38050 * 107.41816 * 359.97438 * 9 7 6 11 11 C 1.47428 * 126.41006 * 179.97438 * 10 9 7 12 12 O 1.21609 * 119.99466 * 126.86188 * 11 10 9 13 13 N 1.34775 * 120.00330 * 307.13690 * 11 10 9 14 14 C 1.46925 * 120.62947 * 4.23794 * 13 11 10 15 15 C 1.52755 * 109.00985 * 233.58574 * 14 13 11 16 16 C 1.53043 * 109.38150 * 305.58904 * 15 14 13 17 17 C 1.53044 * 109.53841 * 61.24352 * 16 15 14 18 18 C 1.46926 * 120.62666 * 184.52107 * 13 11 10 19 19 H 1.08994 * 109.58464 * 246.15116 * 18 13 11 20 20 C 1.52995 * 109.58992 * 6.58490 * 18 13 11 21 21 N 1.46501 * 109.46799 * 287.64125 * 20 18 13 22 22 C 1.36941 * 119.99590 * 185.90025 * 21 20 18 23 23 H 1.07991 * 120.00417 * 4.83305 * 22 21 20 24 24 C 1.38814 * 119.99381 * 184.84091 * 22 21 20 25 25 N 1.31622 * 119.99604 * 184.42840 * 24 22 21 26 26 Si 1.86796 * 120.00478 * 4.42345 * 24 22 21 27 27 H 1.48501 * 109.46927 * 93.66565 * 26 24 22 28 28 H 1.48502 * 109.47523 * 213.66906 * 26 24 22 29 29 H 1.48504 * 109.47092 * 333.67356 * 26 24 22 30 30 H 1.08999 * 109.47292 * 293.04335 * 1 2 3 31 31 H 1.08998 * 109.47063 * 53.04709 * 1 2 3 32 32 H 1.09004 * 109.46748 * 173.04258 * 1 2 3 33 33 H 1.09007 * 109.46950 * 179.97438 * 3 2 1 34 34 H 1.08991 * 109.47514 * 299.99883 * 3 2 1 35 35 H 1.09004 * 109.47557 * 60.00159 * 3 2 1 36 36 H 1.08997 * 109.47205 * 305.80208 * 4 2 1 37 37 H 1.09007 * 109.46874 * 65.80331 * 4 2 1 38 38 H 1.09000 * 109.47024 * 185.79606 * 4 2 1 39 39 H 1.08001 * 126.28957 * 180.02562 * 9 7 6 40 40 H 1.08998 * 109.58631 * 353.42455 * 14 13 11 41 41 H 1.09004 * 109.58156 * 113.84791 * 14 13 11 42 42 H 1.09004 * 109.56326 * 185.55997 * 15 14 13 43 43 H 1.08999 * 109.36018 * 65.50005 * 15 14 13 44 44 H 1.08994 * 109.46563 * 301.21615 * 16 15 14 45 45 H 1.09006 * 109.44492 * 181.25241 * 16 15 14 46 46 H 1.08998 * 109.49698 * 178.67719 * 17 16 15 47 47 H 1.09005 * 109.52540 * 58.59965 * 17 16 15 48 48 H 1.08999 * 109.47370 * 47.63919 * 20 18 13 49 49 H 1.09007 * 109.47135 * 167.64303 * 20 18 13 50 50 H 0.96994 * 120.00384 * 5.89222 * 21 20 18 51 51 H 0.97004 * 119.99852 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2306 6 7 2.6576 -0.1577 2.2332 7 7 2.9640 -1.1452 3.1761 8 1 3.4306 -1.0030 4.0145 9 6 2.5027 -2.3226 2.7249 10 6 1.9049 -2.0910 1.5023 11 6 1.2604 -3.0972 0.6388 12 8 0.1225 -2.9226 0.2466 13 7 1.9301 -4.2131 0.2885 14 6 3.2672 -4.4856 0.8331 15 6 4.2328 -4.7404 -0.3227 16 6 3.6771 -5.8546 -1.2126 17 6 2.3292 -5.4213 -1.7937 18 6 1.3395 -5.1769 -0.6501 19 1 1.1401 -6.1153 -0.1328 20 6 0.0345 -4.6109 -1.2133 21 7 -0.9981 -4.6381 -0.1745 22 6 -2.2870 -4.2919 -0.4812 23 1 -2.5591 -4.0744 -1.5034 24 6 -3.2438 -4.2203 0.5221 25 7 -4.5000 -3.9732 0.2169 26 14 -2.7484 -4.4747 2.3051 27 1 -2.4639 -3.1591 2.9323 28 1 -3.8553 -5.1426 3.0360 29 1 -1.5321 -5.3247 2.3645 30 1 -0.3634 0.4022 0.9456 31 1 -0.3633 0.6178 -0.8212 32 1 -0.3633 -1.0202 -0.1245 33 1 3.1300 1.4426 0.0005 34 1 1.6766 1.9563 -0.8899 35 1 1.6766 1.9564 0.8900 36 1 1.5944 -1.7146 -1.3026 37 1 1.7640 -0.1510 -2.1362 38 1 3.1251 -0.8120 -1.1988 39 1 2.5838 -3.2756 3.2266 40 1 3.6088 -3.6264 1.4102 41 1 3.2280 -5.3666 1.4739 42 1 5.2036 -5.0402 0.0720 43 1 4.3438 -3.8280 -0.9087 44 1 3.5431 -6.7597 -0.6204 45 1 4.3761 -6.0526 -2.0253 46 1 1.9451 -6.2056 -2.4459 47 1 2.4577 -4.5026 -2.3661 48 1 0.1950 -3.5832 -1.5392 49 1 -0.2874 -5.2150 -2.0616 50 1 -0.7689 -4.9015 0.7304 51 1 -5.1687 -3.9236 0.9179 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690484345.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:02 Heat of formation + Delta-G solvation = 85.033443 kcal Electronic energy + Delta-G solvation = -32230.800863 eV Core-core repulsion = 28361.586212 eV Total energy + Delta-G solvation = -3869.214651 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.54729 -39.79230 -37.11054 -36.37782 -34.59406 -32.70092 -31.99754 -30.89942 -30.21018 -29.93537 -27.05947 -26.82177 -26.36084 -24.48536 -22.96629 -22.65744 -22.28876 -21.07675 -20.35548 -19.37041 -18.10193 -17.73475 -17.19371 -16.11756 -15.65556 -15.28207 -14.84565 -14.65770 -14.34405 -14.31813 -14.10957 -13.91810 -13.59728 -13.51021 -13.41549 -13.03652 -12.65136 -12.55354 -12.42666 -12.23789 -12.03852 -11.85210 -11.81178 -11.29462 -11.21251 -11.12818 -10.99832 -10.95111 -10.83838 -10.75552 -10.67573 -10.61445 -10.23347 -10.19617 -9.88920 -9.42508 -9.34059 -8.74102 -8.62365 -8.31656 -8.11113 -6.71047 -5.49952 -2.74954 1.69870 2.46324 2.71467 3.31339 3.49329 3.53407 3.61735 3.64039 4.45611 4.69035 4.74105 4.82165 4.84764 4.87728 5.01210 5.07691 5.18827 5.21130 5.34855 5.41172 5.48639 5.53707 5.61237 5.63545 5.72658 5.78341 5.80525 5.83818 5.88546 5.93870 5.97644 5.98436 6.04567 6.09389 6.15716 6.20584 6.26183 6.27919 6.33548 6.39492 6.54603 6.57542 6.65304 6.87530 7.08881 7.13360 7.23471 7.61982 7.90866 8.27121 8.68911 8.92258 9.52125 10.25616 10.47228 11.70124 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.009071 B = 0.006354 C = 0.004901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3086.046861 B = 4405.675682 C = 5712.291688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.014 3.986 3 C -0.134 4.134 4 C -0.137 4.137 5 C 0.139 3.861 6 N -0.297 5.297 7 N -0.470 5.470 8 H 0.439 0.561 9 C 0.079 3.921 10 C -0.258 4.258 11 C 0.549 3.451 12 O -0.435 6.435 13 N -0.611 5.611 14 C 0.106 3.894 15 C -0.133 4.133 16 C -0.117 4.117 17 C -0.127 4.127 18 C 0.139 3.861 19 H 0.068 0.932 20 C 0.167 3.833 21 N -0.721 5.721 22 C -0.205 4.205 23 H 0.085 0.915 24 C -0.004 4.004 25 N -0.945 5.945 26 Si 0.890 3.110 27 H -0.290 1.290 28 H -0.300 1.300 29 H -0.286 1.286 30 H 0.047 0.953 31 H 0.056 0.944 32 H 0.105 0.895 33 H 0.052 0.948 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.069 0.931 37 H 0.062 0.938 38 H 0.048 0.952 39 H 0.180 0.820 40 H 0.082 0.918 41 H 0.060 0.940 42 H 0.067 0.933 43 H 0.065 0.935 44 H 0.061 0.939 45 H 0.061 0.939 46 H 0.074 0.926 47 H 0.067 0.933 48 H 0.043 0.957 49 H 0.024 0.976 50 H 0.358 0.642 51 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.449 1.977 1.572 23.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.012 3.988 3 C -0.191 4.191 4 C -0.195 4.195 5 C -0.029 4.029 6 N -0.119 5.119 7 N -0.175 5.175 8 H 0.283 0.717 9 C -0.071 4.071 10 C -0.273 4.273 11 C 0.333 3.667 12 O -0.304 6.304 13 N -0.349 5.349 14 C -0.017 4.017 15 C -0.171 4.171 16 C -0.155 4.155 17 C -0.166 4.166 18 C 0.036 3.964 19 H 0.086 0.914 20 C 0.040 3.960 21 N -0.366 5.366 22 C -0.335 4.335 23 H 0.103 0.897 24 C -0.197 4.197 25 N -0.596 5.596 26 Si 0.723 3.277 27 H -0.217 1.217 28 H -0.227 1.227 29 H -0.213 1.213 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.123 0.877 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.067 0.933 39 H 0.197 0.803 40 H 0.101 0.899 41 H 0.078 0.922 42 H 0.086 0.914 43 H 0.084 0.916 44 H 0.080 0.920 45 H 0.080 0.920 46 H 0.092 0.908 47 H 0.086 0.914 48 H 0.060 0.940 49 H 0.042 0.958 50 H 0.192 0.808 51 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 23.041 3.255 1.711 23.333 hybrid contribution 0.429 -0.933 1.914 2.172 sum 23.470 2.322 3.625 23.862 Atomic orbital electron populations 1.22164 0.91589 1.06367 1.01082 1.19056 0.96852 0.93970 0.88935 1.21800 1.00699 0.94789 1.01861 1.21886 1.00146 1.01550 0.95948 1.22304 0.94630 0.91016 0.94924 1.77070 1.22221 1.12323 1.00258 1.46018 1.46751 1.05257 1.19514 0.71723 1.23030 0.96783 0.91589 0.95733 1.20495 1.12858 0.95199 0.98731 1.17474 0.85770 0.81321 0.82088 1.91260 1.14161 1.73671 1.51306 1.47871 1.17479 1.22360 1.47174 1.21631 0.83018 1.01226 0.95856 1.21822 0.98126 0.99567 0.97621 1.21496 0.96863 0.98059 0.99060 1.21904 0.94847 1.02058 0.97754 1.21529 0.93875 0.91755 0.89207 0.91450 1.20800 0.85431 0.98130 0.91643 1.42638 1.05639 1.80863 1.07450 1.18985 0.83395 1.36113 0.95036 0.89724 1.24548 0.95419 1.03044 0.96712 1.69709 1.00387 1.58164 1.31322 0.86438 0.76161 0.77283 0.87844 1.21707 1.22749 1.21342 0.93378 0.92517 0.87685 0.92865 0.92344 0.92352 0.91198 0.91911 0.93314 0.80347 0.89943 0.92210 0.91447 0.91600 0.91977 0.92033 0.90761 0.91396 0.93954 0.95802 0.80835 0.93674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 8.40 37.16 0.31 -2.36 16 2 C 0.01 0.21 0.84 -155.66 -0.13 0.08 16 3 C -0.13 -1.70 7.98 37.16 0.30 -1.40 16 4 C -0.14 -1.89 8.13 37.16 0.30 -1.59 16 5 C 0.14 2.14 5.64 -82.02 -0.46 1.68 16 6 N -0.30 -4.24 11.94 33.90 0.40 -3.84 16 7 N -0.47 -5.13 7.29 30.85 0.22 -4.90 16 8 H 0.44 3.06 8.96 -182.73 -1.64 1.42 16 9 C 0.08 0.93 9.72 -16.56 -0.16 0.77 16 10 C -0.26 -3.95 4.92 -105.07 -0.52 -4.46 16 11 C 0.55 9.49 5.14 -12.52 -0.06 9.43 16 12 O -0.44 -9.46 7.36 5.27 0.04 -9.42 16 13 N -0.61 -8.82 2.98 -166.74 -0.50 -9.31 16 14 C 0.11 1.11 5.95 -3.94 -0.02 1.09 16 15 C -0.13 -1.19 6.06 -26.83 -0.16 -1.35 16 16 C -0.12 -1.09 5.89 -26.69 -0.16 -1.24 16 17 C -0.13 -1.48 5.34 -26.61 -0.14 -1.62 16 18 C 0.14 2.12 2.91 -67.60 -0.20 1.93 16 19 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 20 C 0.17 3.34 4.89 -4.04 -0.02 3.32 16 21 N -0.72 -17.84 2.95 -59.91 -0.18 -18.01 16 22 C -0.20 -6.05 10.21 -15.06 -0.15 -6.20 16 23 H 0.08 2.68 8.06 -52.49 -0.42 2.26 16 24 C 0.00 -0.11 5.50 -17.43 -0.10 -0.21 16 25 N -0.95 -31.25 13.97 55.49 0.78 -30.48 16 26 Si 0.89 24.26 27.98 -169.99 -4.76 19.51 16 27 H -0.29 -8.10 7.11 56.52 0.40 -7.70 16 28 H -0.30 -8.23 7.11 56.52 0.40 -7.83 16 29 H -0.29 -7.33 6.19 56.52 0.35 -6.98 16 30 H 0.05 0.86 8.13 -51.93 -0.42 0.44 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.10 2.21 5.01 -51.93 -0.26 1.95 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.77 8.13 -51.93 -0.42 0.35 16 36 H 0.07 1.11 5.63 -51.93 -0.29 0.81 16 37 H 0.06 0.78 8.14 -51.92 -0.42 0.36 16 38 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.18 1.53 7.82 -52.49 -0.41 1.12 16 40 H 0.08 0.80 4.75 -51.93 -0.25 0.56 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 44 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 48 H 0.04 0.91 6.21 -51.93 -0.32 0.59 16 49 H 0.02 0.49 8.10 -51.93 -0.42 0.06 16 50 H 0.36 8.99 4.88 -40.82 -0.20 8.79 16 51 H 0.25 8.05 8.31 -40.82 -0.34 7.71 16 LS Contribution 382.23 15.07 5.76 5.76 Total: -1.00 -36.45 382.23 -9.34 -45.80 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: -9.74 Total: 7.06 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: -1.38 Total: -2.17 kcal Atomic # 7 Polarization: -67.27 SS G_CDS: 0.73 Total: -66.54 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: 0.04 Total: -9.42 kcal Atomic # 14 Polarization: 24.26 SS G_CDS: -4.76 Total: 19.51 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -36.45 -9.34 -45.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690484345.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.830 kcal (2) G-P(sol) polarization free energy of solvation -36.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds