Wall clock time and date at job start Tue Mar 31 2020 18:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50700 * 109.47167 * 2 1 4 4 C 1.34671 * 126.58873 * 85.02387 * 3 2 1 5 5 N 1.34127 * 108.01598 * 179.97438 * 4 3 2 6 6 C 1.30496 * 109.25743 * 359.97438 * 5 4 3 7 7 C 1.50703 * 125.64884 * 179.97438 * 6 5 4 8 8 C 1.50702 * 109.47055 * 305.02967 * 7 6 5 9 9 O 1.21279 * 120.00473 * 0.02562 * 8 7 6 10 10 N 1.34779 * 119.99935 * 179.97438 * 8 7 6 11 11 C 1.46934 * 120.62929 * 354.17051 * 10 8 7 12 12 C 1.53622 * 108.53939 * 126.36491 * 11 10 8 13 13 C 1.53042 * 109.24484 * 54.85904 * 12 11 10 14 14 H 1.09001 * 109.44742 * 58.52062 * 13 12 11 15 15 C 1.53002 * 109.46194 * 178.48614 * 13 12 11 16 16 C 1.53035 * 109.53511 * 298.50991 * 13 12 11 17 17 C 1.46922 * 120.63188 * 174.44908 * 10 8 7 18 18 H 1.09002 * 109.58741 * 113.80269 * 17 10 8 19 19 C 1.52998 * 109.58704 * 353.51808 * 17 10 8 20 20 N 1.46500 * 109.47102 * 181.59012 * 19 17 10 21 21 C 1.36935 * 120.00077 * 184.94660 * 20 19 17 22 22 H 1.08008 * 119.99920 * 0.02562 * 21 20 19 23 23 C 1.38807 * 120.00550 * 179.97438 * 21 20 19 24 24 N 1.31610 * 120.00519 * 180.02562 * 23 21 20 25 25 Si 1.86802 * 119.99572 * 0.02562 * 23 21 20 26 26 H 1.48508 * 109.46959 * 89.99994 * 25 23 21 27 27 H 1.48501 * 109.47384 * 209.99553 * 25 23 21 28 28 H 1.48500 * 109.47300 * 330.00067 * 25 23 21 29 29 N 1.35037 * 108.70325 * 359.77187 * 6 5 4 30 30 H 0.96997 * 126.40612 * 180.26936 * 29 6 5 31 31 H 1.08995 * 109.46941 * 60.00051 * 1 2 3 32 32 H 1.09004 * 109.46891 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46807 * 299.99906 * 1 2 3 34 34 H 1.09002 * 109.46807 * 240.00094 * 2 1 3 35 35 H 1.09004 * 109.47121 * 120.00525 * 2 1 3 36 36 H 1.08000 * 125.99292 * 359.97135 * 4 3 2 37 37 H 1.09006 * 109.46713 * 65.02934 * 7 6 5 38 38 H 1.08998 * 109.47365 * 185.02725 * 7 6 5 39 39 H 1.08998 * 109.58716 * 246.19982 * 11 10 8 40 40 H 1.09002 * 109.58588 * 6.62296 * 11 10 8 41 41 H 1.08999 * 109.63824 * 294.86102 * 12 11 10 42 42 H 1.09006 * 109.43149 * 174.72479 * 12 11 10 43 43 H 1.08997 * 109.47089 * 180.02562 * 15 13 12 44 44 H 1.09001 * 109.47075 * 300.06957 * 15 13 12 45 45 H 1.09004 * 109.46651 * 60.06436 * 15 13 12 46 46 H 1.09005 * 109.49861 * 301.41417 * 16 13 12 47 47 H 1.08999 * 109.52268 * 181.33202 * 16 13 12 48 48 H 1.09005 * 109.47137 * 301.58782 * 19 17 10 49 49 H 1.08997 * 109.46993 * 61.58430 * 19 17 10 50 50 H 0.96998 * 120.00259 * 4.94947 * 20 19 17 51 51 H 0.97006 * 120.00348 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2115 2.2089 1.0772 5 7 2.6708 3.3950 0.6517 6 6 2.7836 3.3717 -0.6482 7 6 3.2662 4.5110 -1.5085 8 6 2.4348 5.7370 -1.2312 9 8 1.5390 5.6905 -0.4150 10 7 2.6875 6.8856 -1.8896 11 6 3.8474 6.9958 -2.7848 12 6 3.3597 7.4795 -4.1589 13 6 2.5741 8.7814 -3.9857 14 1 3.2117 9.5302 -3.5156 15 6 2.1180 9.2878 -5.3556 16 6 1.3503 8.5270 -3.1027 17 6 1.8119 8.0533 -1.7210 18 1 2.3614 8.8536 -1.2251 19 6 0.5968 7.6655 -0.8760 20 7 -0.2932 8.8213 -0.7412 21 6 -1.4009 8.7428 0.0600 22 1 -1.6181 7.8289 0.5931 23 6 -2.2440 9.8380 0.1882 24 7 -3.3083 9.7627 0.9587 25 14 -1.8679 11.4189 -0.7331 26 1 -2.5237 11.3835 -2.0651 27 1 -2.3819 12.5773 0.0409 28 1 -0.3993 11.5527 -0.9079 29 7 2.4004 2.1561 -1.0943 30 1 2.3868 1.8599 -2.0178 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8900 36 1 2.0191 1.9340 2.1038 37 1 4.3111 4.7213 -1.2803 38 1 3.1717 4.2381 -2.5595 39 1 4.5595 7.7114 -2.3740 40 1 4.3239 6.0208 -2.8871 41 1 2.7154 6.7226 -4.6062 42 1 4.2182 7.6562 -4.8069 43 1 1.5589 10.2152 -5.2324 44 1 2.9896 9.4690 -5.9845 45 1 1.4801 8.5392 -5.8256 46 1 0.7249 7.7602 -3.5599 47 1 0.7781 9.4489 -2.9989 48 1 0.0618 6.8496 -1.3619 49 1 0.9284 7.3451 0.1117 50 1 -0.0980 9.6422 -1.2197 51 1 -3.8977 10.5280 1.0479 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691358735.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:21 Heat of formation + Delta-G solvation = 41.172604 kcal Electronic energy + Delta-G solvation = -29820.624905 eV Core-core repulsion = 25949.508305 eV Total energy + Delta-G solvation = -3871.116599 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.17051 -40.35939 -37.61733 -35.01525 -34.30639 -33.92334 -32.55774 -32.16792 -31.06126 -30.09041 -28.37480 -26.99110 -25.72173 -23.62676 -23.51015 -22.79078 -21.36816 -20.93939 -20.63133 -20.22838 -18.86823 -17.58534 -17.40183 -16.72932 -15.90990 -15.56258 -15.09629 -14.78486 -14.58068 -14.36209 -14.24256 -14.13501 -13.84720 -13.65704 -13.57561 -13.43208 -13.34831 -12.80931 -12.67775 -12.58666 -12.40451 -12.11275 -11.96572 -11.89109 -11.78957 -11.53427 -11.41168 -11.22544 -11.01369 -10.86399 -10.72415 -10.49793 -10.23164 -10.10416 -9.96294 -9.81259 -9.42388 -8.88278 -8.70316 -8.36554 -8.22865 -7.00944 -5.60190 -2.93726 1.91890 2.78038 2.82754 3.10240 3.32004 3.45157 3.46522 3.52837 4.21561 4.51681 4.59556 4.61479 4.69857 4.71957 4.72404 4.78846 4.82880 5.06538 5.07125 5.13249 5.18187 5.28672 5.32513 5.39641 5.46897 5.50887 5.54539 5.61280 5.62718 5.63978 5.69404 5.73950 5.78438 5.80216 5.91000 5.96366 5.99564 6.10213 6.13942 6.19329 6.22189 6.45494 6.65186 6.76383 7.06462 7.27247 7.29631 7.57577 8.15582 8.19358 8.46124 8.60021 9.39514 10.11289 10.31736 11.59094 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.009366 B = 0.003662 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2988.937369 B = 7643.427174 C = 9953.170069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.044 4.044 3 C -0.026 4.026 4 C -0.018 4.018 5 N -0.454 5.454 6 C 0.218 3.782 7 C -0.053 4.053 8 C 0.510 3.490 9 O -0.483 6.483 10 N -0.611 5.611 11 C 0.108 3.892 12 C -0.128 4.128 13 C -0.095 4.095 14 H 0.071 0.929 15 C -0.146 4.146 16 C -0.123 4.123 17 C 0.139 3.861 18 H 0.070 0.930 19 C 0.165 3.835 20 N -0.761 5.761 21 C -0.228 4.228 22 H 0.090 0.910 23 C -0.001 4.001 24 N -0.939 5.939 25 Si 0.882 3.118 26 H -0.286 1.286 27 H -0.292 1.292 28 H -0.278 1.278 29 N -0.564 5.564 30 H 0.413 0.587 31 H 0.053 0.947 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.086 0.914 36 H 0.167 0.833 37 H 0.114 0.886 38 H 0.102 0.898 39 H 0.070 0.930 40 H 0.081 0.919 41 H 0.066 0.934 42 H 0.072 0.928 43 H 0.056 0.944 44 H 0.052 0.948 45 H 0.054 0.946 46 H 0.068 0.932 47 H 0.076 0.924 48 H 0.029 0.971 49 H 0.067 0.933 50 H 0.354 0.646 51 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.557 -16.270 -13.300 28.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.082 4.082 3 C -0.141 4.141 4 C -0.167 4.167 5 N -0.172 5.172 6 C -0.046 4.046 7 C -0.095 4.095 8 C 0.295 3.705 9 O -0.354 6.354 10 N -0.347 5.347 11 C -0.016 4.016 12 C -0.167 4.167 13 C -0.113 4.113 14 H 0.089 0.911 15 C -0.203 4.203 16 C -0.161 4.161 17 C 0.037 3.963 18 H 0.088 0.912 19 C 0.039 3.961 20 N -0.408 5.408 21 C -0.358 4.358 22 H 0.108 0.892 23 C -0.196 4.196 24 N -0.588 5.588 25 Si 0.713 3.287 26 H -0.213 1.213 27 H -0.218 1.218 28 H -0.205 1.205 29 N -0.168 5.168 30 H 0.251 0.749 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.104 0.896 36 H 0.185 0.815 37 H 0.132 0.868 38 H 0.120 0.880 39 H 0.088 0.912 40 H 0.100 0.900 41 H 0.085 0.915 42 H 0.090 0.910 43 H 0.075 0.925 44 H 0.071 0.929 45 H 0.073 0.927 46 H 0.087 0.913 47 H 0.095 0.905 48 H 0.047 0.953 49 H 0.085 0.915 50 H 0.187 0.813 51 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 19.089 -15.735 -12.106 27.542 hybrid contribution -0.040 0.499 -1.749 1.819 sum 19.049 -15.237 -13.855 28.053 Atomic orbital electron populations 1.21792 0.94297 1.01763 1.02898 1.19959 0.96174 0.89061 1.03048 1.21210 1.08920 0.96656 0.87356 1.22120 1.05832 0.90076 0.98675 1.70255 1.17241 1.21669 1.08031 1.22225 1.04727 0.86450 0.91177 1.19999 1.01233 0.89918 0.98323 1.20088 0.85124 0.83604 0.81647 1.90917 1.30313 1.82861 1.31355 1.48082 1.28184 1.12458 1.45963 1.21815 0.87912 1.01891 0.89939 1.22059 1.00227 0.97966 0.96410 1.21157 0.97130 0.96747 0.96280 0.91097 1.21815 1.00921 1.01311 0.96275 1.22031 0.96978 1.02402 0.94713 1.21571 0.92192 0.86590 0.95991 0.91179 1.21290 0.87452 0.88932 0.98441 1.42957 1.28859 1.11843 1.57184 1.19094 0.98063 0.99819 1.18801 0.89181 1.24648 0.97363 0.97539 1.00051 1.69704 1.15801 1.30580 1.42743 0.86575 0.77478 0.84954 0.79742 1.21289 1.21850 1.20466 1.43045 1.51713 1.12484 1.09523 0.74942 0.92802 0.92148 0.91767 0.91553 0.89562 0.81540 0.86762 0.88010 0.91193 0.90044 0.91477 0.90985 0.92477 0.92924 0.92733 0.91346 0.90502 0.95328 0.91549 0.81309 0.93302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.89 37.16 0.37 -0.84 16 2 C -0.04 -0.33 6.49 -27.88 -0.18 -0.51 16 3 C -0.03 -0.29 6.49 -81.60 -0.53 -0.82 16 4 C -0.02 -0.25 11.79 -17.81 -0.21 -0.46 16 5 N -0.45 -7.48 10.58 -10.82 -0.11 -7.60 16 6 C 0.22 2.86 6.96 -155.42 -1.08 1.78 16 7 C -0.05 -0.54 4.68 -29.03 -0.14 -0.68 16 8 C 0.51 7.69 7.52 -10.98 -0.08 7.61 16 9 O -0.48 -10.00 11.10 5.56 0.06 -9.94 16 10 N -0.61 -8.13 2.97 -164.95 -0.49 -8.61 16 11 C 0.11 0.91 6.38 -3.48 -0.02 0.89 16 12 C -0.13 -1.05 5.38 -26.39 -0.14 -1.19 16 13 C -0.09 -1.00 2.68 -90.58 -0.24 -1.24 16 14 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 15 C -0.15 -1.41 9.19 37.16 0.34 -1.06 16 16 C -0.12 -1.80 4.39 -26.61 -0.12 -1.92 16 17 C 0.14 2.32 3.09 -67.60 -0.21 2.11 16 18 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 19 C 0.16 3.71 4.14 -4.04 -0.02 3.69 16 20 N -0.76 -19.70 5.19 -59.91 -0.31 -20.02 16 21 C -0.23 -7.01 10.47 -15.06 -0.16 -7.17 16 22 H 0.09 3.04 8.06 -52.48 -0.42 2.62 16 23 C 0.00 -0.04 5.50 -17.44 -0.10 -0.14 16 24 N -0.94 -31.19 13.97 55.49 0.78 -30.42 16 25 Si 0.88 23.11 27.74 -169.99 -4.71 18.39 16 26 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 27 H -0.29 -7.72 7.11 56.52 0.40 -7.32 16 28 H -0.28 -6.81 6.52 56.52 0.37 -6.44 16 29 N -0.56 -5.77 6.15 -6.54 -0.04 -5.81 16 30 H 0.41 2.73 8.96 -40.82 -0.37 2.36 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.17 2.00 8.06 -52.49 -0.42 1.58 16 37 H 0.11 0.91 7.70 -51.93 -0.40 0.51 16 38 H 0.10 0.66 7.93 -51.93 -0.41 0.25 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.08 0.45 5.93 -51.93 -0.31 0.15 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 46 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 47 H 0.08 1.26 6.90 -51.93 -0.36 0.90 16 48 H 0.03 0.70 7.25 -51.93 -0.38 0.33 16 49 H 0.07 1.70 6.22 -51.93 -0.32 1.37 16 50 H 0.35 8.68 4.24 -40.82 -0.17 8.51 16 51 H 0.26 8.08 8.31 -40.82 -0.34 7.74 16 LS Contribution 397.03 15.07 5.98 5.98 Total: -1.00 -39.82 397.03 -10.01 -49.83 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: -8.65 Total: 8.13 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: -2.51 Total: 0.06 kcal Atomic # 7 Polarization: -72.28 SS G_CDS: -0.18 Total: -72.46 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: 0.06 Total: -9.94 kcal Atomic # 14 Polarization: 23.11 SS G_CDS: -4.71 Total: 18.39 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -39.82 -10.01 -49.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691358735.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.003 kcal (2) G-P(sol) polarization free energy of solvation -39.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds