Wall clock time and date at job start Tue Mar 31 2020 18:25:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50700 * 109.47167 * 2 1 4 4 C 1.34671 * 126.58873 * 85.02387 * 3 2 1 5 5 N 1.34127 * 108.01598 * 179.97438 * 4 3 2 6 6 C 1.30496 * 109.25743 * 359.97438 * 5 4 3 7 7 C 1.50703 * 125.64884 * 179.97438 * 6 5 4 8 8 C 1.50702 * 109.47055 * 305.02967 * 7 6 5 9 9 O 1.21279 * 120.00473 * 0.02562 * 8 7 6 10 10 N 1.34779 * 119.99935 * 179.97438 * 8 7 6 11 11 C 1.46934 * 120.62929 * 354.17051 * 10 8 7 12 12 C 1.53622 * 108.53939 * 126.36491 * 11 10 8 13 13 C 1.53042 * 109.24484 * 54.85904 * 12 11 10 14 14 H 1.09001 * 109.44742 * 58.52062 * 13 12 11 15 15 C 1.53002 * 109.46194 * 178.48614 * 13 12 11 16 16 C 1.53035 * 109.53511 * 298.50991 * 13 12 11 17 17 C 1.46922 * 120.63188 * 174.44908 * 10 8 7 18 18 H 1.09002 * 109.58741 * 113.80269 * 17 10 8 19 19 C 1.52998 * 109.58704 * 353.51808 * 17 10 8 20 20 N 1.46500 * 109.47102 * 181.59012 * 19 17 10 21 21 C 1.36935 * 120.00077 * 184.94660 * 20 19 17 22 22 H 1.08008 * 119.99920 * 0.02562 * 21 20 19 23 23 C 1.38807 * 120.00550 * 179.97438 * 21 20 19 24 24 N 1.31610 * 120.00519 * 180.02562 * 23 21 20 25 25 Si 1.86802 * 119.99572 * 0.02562 * 23 21 20 26 26 H 1.48508 * 109.46959 * 89.99994 * 25 23 21 27 27 H 1.48501 * 109.47384 * 209.99553 * 25 23 21 28 28 H 1.48500 * 109.47300 * 330.00067 * 25 23 21 29 29 N 1.35037 * 108.70325 * 359.77187 * 6 5 4 30 30 H 0.96997 * 126.40612 * 180.26936 * 29 6 5 31 31 H 1.08995 * 109.46941 * 60.00051 * 1 2 3 32 32 H 1.09004 * 109.46891 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46807 * 299.99906 * 1 2 3 34 34 H 1.09002 * 109.46807 * 240.00094 * 2 1 3 35 35 H 1.09004 * 109.47121 * 120.00525 * 2 1 3 36 36 H 1.08000 * 125.99292 * 359.97135 * 4 3 2 37 37 H 1.09006 * 109.46713 * 65.02934 * 7 6 5 38 38 H 1.08998 * 109.47365 * 185.02725 * 7 6 5 39 39 H 1.08998 * 109.58716 * 246.19982 * 11 10 8 40 40 H 1.09002 * 109.58588 * 6.62296 * 11 10 8 41 41 H 1.08999 * 109.63824 * 294.86102 * 12 11 10 42 42 H 1.09006 * 109.43149 * 174.72479 * 12 11 10 43 43 H 1.08997 * 109.47089 * 180.02562 * 15 13 12 44 44 H 1.09001 * 109.47075 * 300.06957 * 15 13 12 45 45 H 1.09004 * 109.46651 * 60.06436 * 15 13 12 46 46 H 1.09005 * 109.49861 * 301.41417 * 16 13 12 47 47 H 1.08999 * 109.52268 * 181.33202 * 16 13 12 48 48 H 1.09005 * 109.47137 * 301.58782 * 19 17 10 49 49 H 1.08997 * 109.46993 * 61.58430 * 19 17 10 50 50 H 0.96998 * 120.00259 * 4.94947 * 20 19 17 51 51 H 0.97006 * 120.00348 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2115 2.2089 1.0772 5 7 2.6708 3.3950 0.6517 6 6 2.7836 3.3717 -0.6482 7 6 3.2662 4.5110 -1.5085 8 6 2.4348 5.7370 -1.2312 9 8 1.5390 5.6905 -0.4150 10 7 2.6875 6.8856 -1.8896 11 6 3.8474 6.9958 -2.7848 12 6 3.3597 7.4795 -4.1589 13 6 2.5741 8.7814 -3.9857 14 1 3.2117 9.5302 -3.5156 15 6 2.1180 9.2878 -5.3556 16 6 1.3503 8.5270 -3.1027 17 6 1.8119 8.0533 -1.7210 18 1 2.3614 8.8536 -1.2251 19 6 0.5968 7.6655 -0.8760 20 7 -0.2932 8.8213 -0.7412 21 6 -1.4009 8.7428 0.0600 22 1 -1.6181 7.8289 0.5931 23 6 -2.2440 9.8380 0.1882 24 7 -3.3083 9.7627 0.9587 25 14 -1.8679 11.4189 -0.7331 26 1 -2.5237 11.3835 -2.0651 27 1 -2.3819 12.5773 0.0409 28 1 -0.3993 11.5527 -0.9079 29 7 2.4004 2.1561 -1.0943 30 1 2.3868 1.8599 -2.0178 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8900 36 1 2.0191 1.9340 2.1038 37 1 4.3111 4.7213 -1.2803 38 1 3.1717 4.2381 -2.5595 39 1 4.5595 7.7114 -2.3740 40 1 4.3239 6.0208 -2.8871 41 1 2.7154 6.7226 -4.6062 42 1 4.2182 7.6562 -4.8069 43 1 1.5589 10.2152 -5.2324 44 1 2.9896 9.4690 -5.9845 45 1 1.4801 8.5392 -5.8256 46 1 0.7249 7.7602 -3.5599 47 1 0.7781 9.4489 -2.9989 48 1 0.0618 6.8496 -1.3619 49 1 0.9284 7.3451 0.1117 50 1 -0.0980 9.6422 -1.2197 51 1 -3.8977 10.5280 1.0479 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691358735.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:14 Heat of formation + Delta-G solvation = 11.918911 kcal Electronic energy + Delta-G solvation = -29821.893440 eV Core-core repulsion = 25949.508305 eV Total energy + Delta-G solvation = -3872.385135 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 5.23 seconds Orbital eigenvalues (eV) -43.09445 -41.50494 -38.71324 -36.87591 -35.12552 -34.93112 -34.12509 -33.41272 -32.40053 -31.46153 -29.32017 -27.88302 -27.42882 -24.79288 -24.38520 -24.12759 -22.84049 -21.97464 -21.74587 -21.14042 -20.09815 -19.49404 -18.38569 -17.91082 -17.17635 -16.60301 -16.44442 -16.04028 -15.68582 -15.56889 -15.37896 -15.13947 -14.92296 -14.84853 -14.67040 -14.46563 -14.45931 -14.34776 -13.89685 -13.79627 -13.58399 -13.39296 -12.98730 -12.87320 -12.86219 -12.70235 -12.50806 -12.48045 -12.21027 -12.06336 -12.04995 -11.92346 -11.81200 -11.37421 -11.22871 -11.04747 -10.94030 -10.79195 -10.17256 -9.59011 -9.25602 -9.16371 -8.05997 -5.40523 1.01278 1.30849 1.38057 1.45507 1.72608 1.81959 2.20220 2.33364 2.44928 3.23698 3.33663 3.53282 3.73697 3.83412 3.86401 3.91560 3.98440 4.05714 4.12201 4.14724 4.25466 4.32277 4.37740 4.42305 4.51772 4.59252 4.68499 4.69777 4.71447 4.75013 4.80844 4.91960 4.93521 4.95783 5.01942 5.08694 5.14149 5.18727 5.26415 5.29401 5.32612 5.40205 5.41616 5.56662 5.68410 5.71665 5.81634 6.17245 6.46830 6.59093 7.02856 7.21890 7.33965 7.78147 8.02743 9.16812 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.009366 B = 0.003662 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2988.937369 B = 7643.427174 C = 9953.170069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.039 4.039 3 C -0.008 4.008 4 C -0.065 4.065 5 N -0.513 5.513 6 C 0.205 3.795 7 C -0.041 4.041 8 C 0.500 3.500 9 O -0.556 6.556 10 N -0.605 5.605 11 C 0.099 3.901 12 C -0.122 4.122 13 C -0.090 4.090 14 H 0.078 0.922 15 C -0.144 4.144 16 C -0.117 4.117 17 C 0.149 3.851 18 H 0.071 0.929 19 C 0.178 3.822 20 N -0.757 5.757 21 C -0.237 4.237 22 H 0.036 0.964 23 C -0.066 4.066 24 N -0.987 5.987 25 Si 0.964 3.036 26 H -0.271 1.271 27 H -0.289 1.289 28 H -0.249 1.249 29 N -0.550 5.550 30 H 0.433 0.567 31 H 0.042 0.958 32 H 0.083 0.917 33 H 0.042 0.958 34 H 0.095 0.905 35 H 0.101 0.899 36 H 0.166 0.834 37 H 0.147 0.853 38 H 0.151 0.849 39 H 0.084 0.916 40 H 0.122 0.878 41 H 0.067 0.933 42 H 0.109 0.891 43 H 0.044 0.956 44 H 0.077 0.923 45 H 0.050 0.950 46 H 0.053 0.947 47 H 0.056 0.944 48 H 0.001 0.999 49 H 0.029 0.971 50 H 0.365 0.635 51 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.164 -16.262 -17.578 33.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.077 4.077 3 C -0.125 4.125 4 C -0.212 4.212 5 N -0.232 5.232 6 C -0.060 4.060 7 C -0.082 4.082 8 C 0.287 3.713 9 O -0.432 6.432 10 N -0.340 5.340 11 C -0.022 4.022 12 C -0.160 4.160 13 C -0.109 4.109 14 H 0.097 0.903 15 C -0.201 4.201 16 C -0.156 4.156 17 C 0.044 3.956 18 H 0.089 0.911 19 C 0.053 3.947 20 N -0.405 5.405 21 C -0.368 4.368 22 H 0.054 0.946 23 C -0.257 4.257 24 N -0.638 5.638 25 Si 0.790 3.210 26 H -0.197 1.197 27 H -0.215 1.215 28 H -0.173 1.173 29 N -0.156 5.156 30 H 0.274 0.726 31 H 0.061 0.939 32 H 0.102 0.898 33 H 0.061 0.939 34 H 0.113 0.887 35 H 0.119 0.881 36 H 0.184 0.816 37 H 0.164 0.836 38 H 0.168 0.832 39 H 0.102 0.898 40 H 0.140 0.860 41 H 0.085 0.915 42 H 0.127 0.873 43 H 0.063 0.937 44 H 0.096 0.904 45 H 0.070 0.930 46 H 0.072 0.928 47 H 0.075 0.925 48 H 0.019 0.981 49 H 0.047 0.953 50 H 0.199 0.801 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 22.775 -15.753 -16.459 32.214 hybrid contribution -1.235 0.384 -0.328 1.335 sum 21.539 -15.368 -16.787 31.336 Atomic orbital electron populations 1.21780 0.94825 1.02774 1.01288 1.20093 0.95462 0.86994 1.05175 1.21662 1.06509 0.97678 0.86651 1.22374 1.08244 0.90637 0.99962 1.70151 1.19235 1.23280 1.10520 1.22670 1.04635 0.87899 0.90757 1.20131 1.01348 0.86289 1.00418 1.21034 0.84617 0.85168 0.80444 1.90911 1.33681 1.84086 1.34565 1.48189 1.28811 1.10755 1.46259 1.22294 0.86045 1.04833 0.88981 1.22063 1.01122 0.96236 0.96592 1.21159 0.95274 0.98694 0.95765 0.90342 1.21796 1.01811 1.00571 0.95918 1.21962 0.98845 1.00703 0.94053 1.21209 0.90181 0.88006 0.96158 0.91101 1.21065 0.89103 0.86921 0.97647 1.42858 1.28037 1.13310 1.56329 1.18930 1.00204 0.98300 1.19388 0.94579 1.25632 0.96818 1.02038 1.01228 1.69921 1.17156 1.32144 1.44563 0.85284 0.79078 0.78440 0.78238 1.19657 1.21541 1.17332 1.42980 1.50601 1.11584 1.10398 0.72601 0.93910 0.89803 0.93912 0.88698 0.88108 0.81634 0.83566 0.83178 0.89786 0.85995 0.91474 0.87308 0.93674 0.90382 0.93042 0.92786 0.92523 0.98100 0.95319 0.80086 0.93138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 9.89 71.98 0.71 -1.60 16 2 C -0.04 -0.52 6.49 29.85 0.19 -0.32 16 3 C -0.01 -0.18 6.49 40.95 0.27 0.09 16 4 C -0.06 -1.92 11.79 83.52 0.98 -0.93 16 5 N -0.51 -17.85 10.58 -188.13 -1.99 -19.84 16 6 C 0.21 5.29 6.96 138.13 0.96 6.25 16 7 C -0.04 -0.73 4.68 29.10 0.14 -0.60 16 8 C 0.50 15.04 7.52 87.66 0.66 15.70 16 9 O -0.56 -24.84 11.10 -3.03 -0.03 -24.87 16 10 N -0.61 -15.24 2.97 -794.17 -2.36 -17.59 16 11 C 0.10 1.21 6.38 86.51 0.55 1.76 16 12 C -0.12 -1.36 5.38 30.82 0.17 -1.20 16 13 C -0.09 -1.60 2.68 -10.77 -0.03 -1.62 16 14 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 15 C -0.14 -2.26 9.19 71.98 0.66 -1.60 16 16 C -0.12 -3.32 4.39 30.67 0.13 -3.19 16 17 C 0.15 4.97 3.09 44.98 0.14 5.11 16 18 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 19 C 0.18 8.60 4.14 86.38 0.36 8.96 16 20 N -0.76 -41.03 5.19 -343.45 -1.78 -42.81 16 21 C -0.24 -15.56 10.47 84.03 0.88 -14.68 16 22 H 0.04 2.69 8.06 -2.91 -0.02 2.67 16 23 C -0.07 -4.28 5.50 84.86 0.47 -3.81 16 24 N -0.99 -68.37 13.97 21.65 0.30 -68.06 16 25 Si 0.96 48.33 27.74 68.60 1.90 50.23 16 26 H -0.27 -12.94 7.11 99.48 0.71 -12.23 16 27 H -0.29 -14.37 7.11 99.48 0.71 -13.66 16 28 H -0.25 -11.18 6.52 99.48 0.65 -10.53 16 29 N -0.55 -10.51 6.15 -174.60 -1.07 -11.59 16 30 H 0.43 4.48 8.96 -92.71 -0.83 3.65 16 31 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 33 H 0.04 0.83 8.14 -2.39 -0.02 0.82 16 34 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.10 1.09 8.14 -2.38 -0.02 1.07 16 36 H 0.17 4.50 8.06 -2.91 -0.02 4.48 16 37 H 0.15 1.71 7.70 -2.38 -0.02 1.69 16 38 H 0.15 1.19 7.93 -2.39 -0.02 1.17 16 39 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.12 0.56 5.93 -2.39 -0.01 0.55 16 41 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.11 0.56 8.14 -2.38 -0.02 0.54 16 43 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 45 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 46 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 47 H 0.06 1.81 6.90 -2.39 -0.02 1.79 16 48 H 0.00 0.05 7.25 -2.38 -0.02 0.04 16 49 H 0.03 1.62 6.22 -2.39 -0.01 1.61 16 50 H 0.36 18.01 4.24 -92.71 -0.39 17.61 16 51 H 0.26 16.86 8.31 -92.70 -0.77 16.09 16 Total: -1.00 -98.96 397.03 1.86 -97.10 By element: Atomic # 1 Polarization: 29.45 SS G_CDS: -0.35 Total: 29.10 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: 7.24 Total: 8.33 kcal Atomic # 7 Polarization: -152.99 SS G_CDS: -6.90 Total: -159.89 kcal Atomic # 8 Polarization: -24.84 SS G_CDS: -0.03 Total: -24.87 kcal Atomic # 14 Polarization: 48.33 SS G_CDS: 1.90 Total: 50.23 kcal Total: -98.96 1.86 -97.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691358735.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.015 kcal (2) G-P(sol) polarization free energy of solvation -98.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.23 seconds